NO04G04640, NO04G04640 (gene) Nannochloropsis oceanica

Overview
NameNO04G04640
Unique NameNO04G04640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1101
Alignment locationchr4:1264296..1265396 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1264296..1265396 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009724DUF1301_TMEM70
Homology
BLAST of NO04G04640 vs. NCBI_GenBank
Match: EWM28852.1 (hypothetical protein Naga_100133g16 [Nannochloropsis gaditana])

HSP 1 Score: 247.7 bits (631), Expect = 4.500e-62
Identity = 158/293 (53.92%), Postives = 183/293 (62.46%), Query Frame = 0
Query:    1 MLAAASPLLLLQRRTIVLTFRANGSGYKITSTRVLCPIKSTRAYSASRSGPTRYSTSCCGSSSPLSASFP-SCAPRLPLYPLTTTEGRRSLSTAPSSTNPIKGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDR--TPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKLLGRPLKKSEMENGGEMN 291
            ML+ A   LL QRRT  +    N     I S R+   +++      S+    + S +   S     AS P S A RL   P    +  R+ S+            D   VLIY G H  VIRTLKRVSLTTCIIGLFSTPFFLTLGSE+VP+AAN++LT IVLLATCGPTILLHAFTKPYIFALR+                        R  TPD++FSADTI++LSRR+TT+F LSDVKPLP STRPFVSFSARDRLYFVHGETFPDK LL  LLGRPLKKSE+E   + N
Sbjct:   14 MLSTAKFSLLPQRRTSSIVLDLN-----IRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAG---------DGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN 292          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: XP_005854143.1 (hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526] >EKU22220.1 hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 123.6 bits (309), Expect = 9.900e-25
Identity = 68/99 (68.69%), Postives = 73/99 (73.74%), Query Frame = 0
Query:  105 DDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPL------------------AANISLTSIVLLATCGPTILLHAFTKPYIFALRL 186
            D   VLIY G H  VIRTLKRVSLTTCIIGLFSTPFFLTLGSE+VP+                  AAN++LT IVLLATCGPTILLHAFTKPYIFALR+
Sbjct:   30 DGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMKKGMHECKVCMGWISPHTAANVALTGIVLLATCGPTILLHAFTKPYIFALRV 128          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: XP_015631602.1 (PREDICTED: transmembrane protein 70, mitochondrial [Oryza sativa Japonica Group] >AAO66526.1 expressed protein [Oryza sativa Japonica Group] >ABF99955.1 expressed protein [Oryza sativa Japonica Group] >EAY92632.1 hypothetical protein OsI_14376 [Oryza sativa Indica Group] >BAG95759.1 unnamed protein product [Oryza sativa Japonica Group] >BAG87167.1 unnamed protein product [Oryza sativa Japonica Group] >EEE60324.1 hypothetical protein OsJ_13412 [Oryza sativa Japonica Group] >BAS87417.1 Os03g0853800 [Oryza sativa Japonica Group])

HSP 1 Score: 81.3 bits (199), Expect = 5.600e-12
Identity = 59/203 (29.06%), Postives = 90/203 (44.33%), Query Frame = 0
Query:   83 TTEGRRSLSTAPSSTNPIKGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKLLGRPLKKSEMEN 286
            T      +S  P S    +  +DD   L+Y+G     IR +K +SL+TC + +   P    + S  + +    ++ S V+  +   T  LH F  PYI  LR                         R     F A+ ++WL+  +T T K +DV+P P + RPFV+F A    YFV  E FP+K LL +L  +   +S  +N
Sbjct:   84 TENSGSKISIGPKSKQIKEDDKDDR--LVYQGPISSTIRKVKLLSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSATTTAALHWFVSPYIHKLRW------------------------RPGSDSFEAEIMSWLATPLTRTIKFADVRP-PETNRPFVTFRAEGNFYFVDAEHFPNKALLARLTPKHPNESAFKN 259          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: XP_006650918.1 (PREDICTED: uncharacterized protein LOC102719753 [Oryza brachyantha])

HSP 1 Score: 80.5 bits (197), Expect = 9.600e-12
Identity = 58/192 (30.21%), Postives = 89/192 (46.35%), Query Frame = 0
Query:   82 TTTEGRRSLSTAPSSTNPIKGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKL 274
            T T G + +S  P +   I+  +D+G  L+Y+G     I+ +K +SL+TC + +   P    + S  + +    ++ S V+  +   T  LH F  PYI  LR                         R     F A+T+ WL+  +T T K +DV+P P + RPFV+F A    YFV  E F +K LL +L
Sbjct:   84 TETSGSK-ISIGPKAKKNIEDDKDEG--LVYQGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSATTTAALHWFVSPYIHKLRW------------------------RPGSDSFEAETMTWLATPLTRTVKFADVRP-PETNRPFVTFKADGNFYFVDAEHFSNKALLARL 247          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: XP_009836773.1 (hypothetical protein H257_11506 [Aphanomyces astaci] >ETV73837.1 hypothetical protein H257_11506 [Aphanomyces astaci])

HSP 1 Score: 80.5 bits (197), Expect = 9.600e-12
Identity = 52/173 (30.06%), Postives = 84/173 (48.55%), Query Frame = 0
Query:  110 LIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKD--LLEKLLGRPLKK 281
            LIYE      +R +K VS+T+C +     P     GS    + A  ++ S ++    G T L H   KPY+  L +                       DR  ++  + +T+N L+ + T+ F+L+D     +S  P ++F A+D+ YFVH E F + D  ++EKLLGRPL++
Sbjct:   47 LIYEAPLARPVRMMKAVSVTSCTLTSIGMPVTCIYGSVLSSVVAQWAMCSTIMFFGMGTTALFHVLFKPYVLRLWI-----------------------DRDSEL-VTVETLNLLAAKTTSAFQLTDATFPDKSMHPMINFKAKDKHYFVHPEAFDEADRAVVEKLLGRPLEE 195          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: OEL27532.1 (hypothetical protein BAE44_0011450 [Dichanthelium oligosanthes])

HSP 1 Score: 80.5 bits (197), Expect = 9.600e-12
Identity = 58/195 (29.74%), Postives = 86/195 (44.10%), Query Frame = 0
Query:   84 TEGRRSLSTAPSSTNPIKGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKLLGRPL 279
            TE   S  +       IK  +DDG  L+Y+G     I+ +K +SL+TC + +   P    + S  + +    ++ S V+  +   T  LH F  PYI  LR                         R     F A+ ++WL+  +  T K +DV+P P S RPFV+F A    YFV  E F +K LL +L  + L
Sbjct:   84 TEASGSKISIGPKPKQIKDDDDDGN-LVYQGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPGMNVILKGAVASTVIFLSATTTAALHWFVSPYIHKLRW------------------------RPGSDSFEAEVLSWLATPLKRTIKFADVRP-PESNRPFVTFKAEGNFYFVDAEHFSNKALLARLTPQKL 252          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: BAF13846.1 (Os03g0853800 [Oryza sativa Japonica Group] >BAS87416.1 Os03g0853800 [Oryza sativa Japonica Group])

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-11
Identity = 54/183 (29.51%), Postives = 84/183 (45.90%), Query Frame = 0
Query:  103 QEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKLLGRPLKKSEMEN 286
            ++D    L+Y+G     IR +K +SL+TC + +   P    + S  + +    ++ S V+  +   T  LH F  PYI  LR                         R     F A+ ++WL+  +T T K +DV+P P + RPFV+F A    YFV  E FP+K LL +L  +   +S  +N
Sbjct:   64 EDDKDDRLVYQGPISSTIRKVKLLSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSATTTAALHWFVSPYIHKLRW------------------------RPGSDSFEAEIMSWLATPLTRTIKFADVRP-PETNRPFVTFRAEGNFYFVDAEHFPNKALLARLTPKHPNESAFKN 221          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: XP_004981006.1 (uncharacterized protein LOC101770128 [Setaria italica])

HSP 1 Score: 78.6 bits (192), Expect = 3.600e-11
Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 0
Query:  103 QEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKLLGRPL 279
            ++DD   L+Y G    +I+ +K +SL+TC + +   P    + S  + +    ++ S V+  +   T  LH F  PYI  LR                         R     F A+ ++WL+  +  T K +D++P P + RPFV+F A    YFV GE F +K LL +L  + L
Sbjct:  103 EDDDDSNLVYHGPISSIIKKVKLLSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSATTTAALHWFVSPYIHKLRW------------------------RPGSDSFEAEVMSWLATPLKRTIKFADIRP-PETNRPFVTFKAEGNFYFVDGEHFSNKALLARLTPQKL 253          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: XP_008869821.1 (hypothetical protein H310_06499 [Aphanomyces invadans] >ETW01973.1 hypothetical protein H310_06499 [Aphanomyces invadans])

HSP 1 Score: 77.8 bits (190), Expect = 6.200e-11
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 0
Query:  110 LIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETF--PDKDLLEKLLGRP 278
            LIYE      +R +K VS+T+C +     P     GS    L A  ++   V++   G T L H   KPY+  L +                       +R  +   + +T+N L+ + TT F+L+D     +S  P ++F A+D+ YFVH E F   D+ ++E+LLGRP
Sbjct:   45 LIYEAPLARPVRMMKAVSITSCTLTSIGMPITCMYGSVTSSLVAQWAMCGTVMIFGMGTTALFHVLFKPYVLRLWI-----------------------NRNSET-VTVETLNLLAAKTTTDFQLADATFPDKSMHPMINFKAKDKHYFVHPEAFGEDDRSVVERLLGRP 190          
BLAST of NO04G04640 vs. NCBI_GenBank
Match: GAX99622.1 (Hypothetical protein PINS_007466 [Pythium insidiosum])

HSP 1 Score: 76.6 bits (187), Expect = 1.400e-10
Identity = 52/193 (26.94%), Postives = 85/193 (44.04%), Query Frame = 0
Query:   87 RRSLSTAPSSTNPIKGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLXXXXXXXXXXXXXXXXXXXXXHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKLLGRPLK 280
            RR LS++ +ST      E     L+Y+      +R +K VS+T+C + L   P    L  ++  +    ++   ++L   G T L H   KPY+  + +                       DR+ +   +A+T+   +R  TT F L DV   P+S  P +SF A +  YF+H E   D DL++  +G   K
Sbjct:   46 RRGLSSSSTSTXXATXPE-----LVYQAPMARAVRLMKGVSVTSCALTLVGMPALCVLSEQSASIIGKWAMCGTIMLFGLGTTSLYHVLFKPYVMRMWI-----------------------DRSEN-RVTAETVTLFARLTTTDFALGDVTRPPKSMHPMISFRAGEXDYFIHPECLQDDDLVKVFMGEDFK 209          
The following BLAST results are available for this feature:
BLAST of NO04G04640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28852.14.500e-6253.92hypothetical protein Naga_100133g16 [Nannochlorops... [more]
XP_005854143.19.900e-2568.69hypothetical protein NGA_0204200, partial [Nannoch... [more]
XP_015631602.15.600e-1229.06PREDICTED: transmembrane protein 70, mitochondrial... [more]
XP_006650918.19.600e-1230.21PREDICTED: uncharacterized protein LOC102719753 [O... [more]
XP_009836773.19.600e-1230.06hypothetical protein H257_11506 [Aphanomyces astac... [more]
OEL27532.19.600e-1229.74hypothetical protein BAE44_0011450 [Dichanthelium ... [more]
BAF13846.11.300e-1129.51Os03g0853800 [Oryza sativa Japonica Group] >BAS874... [more]
XP_004981006.13.600e-1128.98uncharacterized protein LOC101770128 [Setaria ital... [more]
XP_008869821.16.200e-1130.00hypothetical protein H310_06499 [Aphanomyces invad... [more]
GAX99622.11.400e-1026.94Hypothetical protein PINS_007466 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009322NSK009322Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04640.1NO04G04640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579625gene_2251Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100133g16gene1753Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04640.1NO04G04640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04640 ID=NO04G04640|Name=NO04G04640|organism=Nannochloropsis oceanica|type=gene|length=1101bp
ATGCTGGCCGCGGCCTCCCCTCTGCTGCTACTGCAGCGGCGGACGATTGT
GCTGACTTTTCGGGCCAATGGCAGCGGCTATAAAATCACAAGCACCCGCG
TCCTGTGTCCCATCAAAAGCACAAGAGCCTACAGCGCCTCGCGCTCGGGC
CCCACTCGCTACTCTACCTCCTGCTGCGGCTCCTCCTCCCCATTATCAGC
TTCCTTCCCGTCATGTGCCCCCCGCCTTCCACTCTATCCTCTAACTACCA
CCGAGGGGCGCCGCTCCCTCTCCACCGCGCCTTCCTCCACCAACCCCATC
AAAGGACAAGAAGATGATGGCGGCGTGCTGATATACGAGGGGGGGCATCG
TGACGTCATTCGAACCCTCAAACGCGTCTCCCTTACGACCTGCATCATCG
GTCTCTTTTCCACGCCCTTCTTCCTCACACTGGGTTCCGAGGCAGTTCCT
TTGgtaggtgccagtgctggctgtcggcggaagttgtagtgagacagctg
cgctccttctcaccattttttgtttgtctccttacgcgcacacacacata
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacacacacatacacacacacatacatgcacaca
aaatccttcccctggttcccttatgtagGCTGCCAACATCTCTCTCACCA
GCATCGTCCTCCTTGCCACTTGCGGGCCCACAATCCTCCTACACGCCTTC
ACCAAGCCCTACATCTTCGCCCTGCGCCTCCTCCCCCCTCCATCCCTCCC
TCCTCCTCAAGACGACTCCATCCCTCCTGCCACCACCAGGAGACATACAG
ACCGAACGCCCGACATCTATTTCTCCGCTGACACGATTAATTGGCTCTCG
CGTCGTGTCACCACAACTTTTAAACTCTCCGACGTCAAGCCCCTCCCTCG
TTCAACTCGTCCTTTTGTGAGTTTCAGTGCCAGGGATCGACTGTATTTCG
TGCATGGTGAGACGTTTCCGGACAAGGATTTATTGGAAAAATTGCTAGGA
CGACCATTGAAGAAGAGTGAAATGGAGAATGGGGGAGAGATGAATAGGTA
G
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protein sequence of NO04G04640.1

>NO04G04640.1-protein ID=NO04G04640.1-protein|Name=NO04G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MLAAASPLLLLQRRTIVLTFRANGSGYKITSTRVLCPIKSTRAYSASRSG
PTRYSTSCCGSSSPLSASFPSCAPRLPLYPLTTTEGRRSLSTAPSSTNPI
KGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVP
LAANISLTSIVLLATCGPTILLHAFTKPYIFALRLLPPPSLPPPQDDSIP
PATTRRHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSF
SARDRLYFVHGETFPDKDLLEKLLGRPLKKSEMENGGEMNR*
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Synonyms
Publications