NO04G04640.1, NO04G04640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04640.1
Unique NameNO04G04640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr4:1264296..1265396 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1264296..1265396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04640.1 vs.
Match: EWM28852.1 (hypothetical protein Naga_100133g16 [Nannochloropsis gaditana])

HSP 1 Score: 250.4 bits (638), Expect = 7.000e-63
Identity = 162/295 (54.92%), Postives = 188/295 (63.73%), Query Frame = 0 
Query:    1 MLAAASPLLLLQRRTIVLTFRANGSGYKITSTRVLCPIKSTRAYSASRSGPTRYSTSCCGSSSPLSASFP-SCAPRLPLYPLTTTEGRRSLSTAPSSTNPIKGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVPLAANISLTSIVLLATCGPTILLHAFTKPYIFALRLLP----PPSLPPPQDDSIPPATTRRHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSFSARDRLYFVHGETFPDKDLLEKLLGRPLKKSEMENGGEMN 291
            ML+ A   LL QRRT  +    N     I S R+   +++      S+    + S +   S     AS P S A RL   P    +  R+ S+            D   VLIY G H  VIRTLKRVSLTTCIIGLFSTPFFLTLGSE+VP+AAN++LT IVLLATCGPTILLHAFTKPYIFALR+ P       L             RR+T  TPD++FSADTI++LSRR+TT+F LSDVKPLP STRPFVSFSARDRLYFVHGETFPDK LL  LLGRPLKKSE+E   + N
Sbjct:   14 MLSTAKFSLLPQRRTSSIVLDLN-----IRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAG---------DGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNT--TPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN 292
The following BLAST results are available for this feature:
BLAST of NO04G04640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28852.17.000e-6354.92hypothetical protein Naga_100133g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04640NO04G04640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04640.1NO04G04640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04640.1.cds1NO04G04640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04640.1.cds2NO04G04640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04640.1 ID=NO04G04640.1|Name=NO04G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ATGCTGGCCGCGGCCTCCCCTCTGCTGCTACTGCAGCGGCGGACGATTGT
GCTGACTTTTCGGGCCAATGGCAGCGGCTATAAAATCACAAGCACCCGCG
TCCTGTGTCCCATCAAAAGCACAAGAGCCTACAGCGCCTCGCGCTCGGGC
CCCACTCGCTACTCTACCTCCTGCTGCGGCTCCTCCTCCCCATTATCAGC
TTCCTTCCCGTCATGTGCCCCCCGCCTTCCACTCTATCCTCTAACTACCA
CCGAGGGGCGCCGCTCCCTCTCCACCGCGCCTTCCTCCACCAACCCCATC
AAAGGACAAGAAGATGATGGCGGCGTGCTGATATACGAGGGGGGGCATCG
TGACGTCATTCGAACCCTCAAACGCGTCTCCCTTACGACCTGCATCATCG
GTCTCTTTTCCACGCCCTTCTTCCTCACACTGGGTTCCGAGGCAGTTCCT
TTGGCTGCCAACATCTCTCTCACCAGCATCGTCCTCCTTGCCACTTGCGG
GCCCACAATCCTCCTACACGCCTTCACCAAGCCCTACATCTTCGCCCTGC
GCCTCCTCCCCCCTCCATCCCTCCCTCCTCCTCAAGACGACTCCATCCCT
CCTGCCACCACCAGGAGACATACAGACCGAACGCCCGACATCTATTTCTC
CGCTGACACGATTAATTGGCTCTCGCGTCGTGTCACCACAACTTTTAAAC
TCTCCGACGTCAAGCCCCTCCCTCGTTCAACTCGTCCTTTTGTGAGTTTC
AGTGCCAGGGATCGACTGTATTTCGTGCATGGTGAGACGTTTCCGGACAA
GGATTTATTGGAAAAATTGCTAGGACGACCATTGAAGAAGAGTGAAATGG
AGAATGGGGGAGAGATGAATAGGTAG
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protein sequence of NO04G04640.1

>NO04G04640.1-protein ID=NO04G04640.1-protein|Name=NO04G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MLAAASPLLLLQRRTIVLTFRANGSGYKITSTRVLCPIKSTRAYSASRSG
PTRYSTSCCGSSSPLSASFPSCAPRLPLYPLTTTEGRRSLSTAPSSTNPI
KGQEDDGGVLIYEGGHRDVIRTLKRVSLTTCIIGLFSTPFFLTLGSEAVP
LAANISLTSIVLLATCGPTILLHAFTKPYIFALRLLPPPSLPPPQDDSIP
PATTRRHTDRTPDIYFSADTINWLSRRVTTTFKLSDVKPLPRSTRPFVSF
SARDRLYFVHGETFPDKDLLEKLLGRPLKKSEMENGGEMNR*
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mRNA from alignment at chr4:1264296..1265396+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04640.1 ID=NO04G04640.1|Name=NO04G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp|location=Sequence derived from alignment at chr4:1264296..1265396+ (Nannochloropsis oceanica)
ATGCTGGCCGCGGCCTCCCCTCTGCTGCTACTGCAGCGGCGGACGATTGT
GCTGACTTTTCGGGCCAATGGCAGCGGCTATAAAATCACAAGCACCCGCG
TCCTGTGTCCCATCAAAAGCACAAGAGCCTACAGCGCCTCGCGCTCGGGC
CCCACTCGCTACTCTACCTCCTGCTGCGGCTCCTCCTCCCCATTATCAGC
TTCCTTCCCGTCATGTGCCCCCCGCCTTCCACTCTATCCTCTAACTACCA
CCGAGGGGCGCCGCTCCCTCTCCACCGCGCCTTCCTCCACCAACCCCATC
AAAGGACAAGAAGATGATGGCGGCGTGCTGATATACGAGGGGGGGCATCG
TGACGTCATTCGAACCCTCAAACGCGTCTCCCTTACGACCTGCATCATCG
GTCTCTTTTCCACGCCCTTCTTCCTCACACTGGGTTCCGAGGCAGTTCCT
TTGGTAGGTGCCAGTGCTGGCTGTCGGCGGAAGTTGTAGTGAGACAGCTG
CGCTCCTTCTCACCATTTTTTGTTTGTCTCCTTACGCGCACACACACATA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACATACACACACACATACATGCACACA
AAATCCTTCCCCTGGTTCCCTTATGTAGGCTGCCAACATCTCTCTCACCA
GCATCGTCCTCCTTGCCACTTGCGGGCCCACAATCCTCCTACACGCCTTC
ACCAAGCCCTACATCTTCGCCCTGCGCCTCCTCCCCCCTCCATCCCTCCC
TCCTCCTCAAGACGACTCCATCCCTCCTGCCACCACCAGGAGACATACAG
ACCGAACGCCCGACATCTATTTCTCCGCTGACACGATTAATTGGCTCTCG
CGTCGTGTCACCACAACTTTTAAACTCTCCGACGTCAAGCCCCTCCCTCG
TTCAACTCGTCCTTTTGTGAGTTTCAGTGCCAGGGATCGACTGTATTTCG
TGCATGGTGAGACGTTTCCGGACAAGGATTTATTGGAAAAATTGCTAGGA
CGACCATTGAAGAAGAGTGAAATGGAGAATGGGGGAGAGATGAATAGGTA
G
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Coding sequence (CDS) from alignment at chr4:1264296..1265396+

>NO04G04640.1 ID=NO04G04640.1|Name=NO04G04640.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr4:1264296..1265396+ (Nannochloropsis oceanica)
ATGCTGGCCGCGGCCTCCCCTCTGCTGCTACTGCAGCGGCGGACGATTGT
GCTGACTTTTCGGGCCAATGGCAGCGGCTATAAAATCACAAGCACCCGCG
TCCTGTGTCCCATCAAAAGCACAAGAGCCTACAGCGCCTCGCGCTCGGGC
CCCACTCGCTACTCTACCTCCTGCTGCGGCTCCTCCTCCCCATTATCAGC
TTCCTTCCCGTCATGTGCCCCCCGCCTTCCACTCTATCCTCTAACTACCA
CCGAGGGGCGCCGCTCCCTCTCCACCGCGCCTTCCTCCACCAACCCCATC
AAAGGACAAGAAGATGATGGCGGCGTGCTGATATACGAGGGGGGGCATCG
TGACGTCATTCGAACCCTCAAACGCGTCTCCCTTACGACCTGCATCATCG
GTCTCTTTTCCACGCCCTTCTTCCTCACACTGGGTTCCGAGGCAGTTCCT
TTGGCTGCCAACATCTCTCTCACCAGCATCGTCCTCCTTGCCACTTGCGG
GCCCACAATCCTCCTACACGCCTTCACCAAGCCCTACATCTTCGCCCTGC
GCCTCCTCCCCCCTCCATCCCTCCCTCCTCCTCAAGACGACTCCATCCCT
CCTGCCACCACCAGGAGACATACAGACCGAACGCCCGACATCTATTTCTC
CGCTGACACGATTAATTGGCTCTCGCGTCGTGTCACCACAACTTTTAAAC
TCTCCGACGTCAAGCCCCTCCCTCGTTCAACTCGTCCTTTTGTGAGTTTC
AGTGCCAGGGATCGACTGTATTTCGTGCATGGTGAGACGTTTCCGGACAA
GGATTTATTGGAAAAATTGCTAGGACGACCATTGAAGAAGAGTGAAATGG
AGAATGGGGGAGAGATGAATAGGTAG
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Synonyms
Publications