NO04G04490, NO04G04490 (gene) Nannochloropsis oceanica

Overview
NameNO04G04490
Unique NameNO04G04490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr4:1217450..1218268 +

Link to JBrowse

Properties
Property NameValue
DescriptionIron-sulfur protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1217450..1218268 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035903HesB-like_dom_sf
IPR000361FeS_biogenesis
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005198structural molecule activity
Homology
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_005855229.1 (iron-sulfur protein [Nannochloropsis gaditana CCMP526] >EKU21131.1 iron-sulfur protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.1 bits (531), Expect = 1.700e-50
Identity = 100/110 (90.91%), Postives = 106/110 (96.36%), Query Frame = 0 
Query:  163 RAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            RAAPLQLT+RAV+RIKELLASKGPSV+GVRLGTK+RGCNGLSYTMNY ETRPKFDEEV VGGVTVFVEPSALMHVVGT MD+EETELSREFTF+NPNAKG CGCGESFNV
Sbjct:   77 RAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 186
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: EWM28839.1 (iron-sulfur protein [Nannochloropsis gaditana])

HSP 1 Score: 209.1 bits (531), Expect = 1.700e-50
Identity = 100/110 (90.91%), Postives = 106/110 (96.36%), Query Frame = 0 
Query:  163 RAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            RAAPLQLT+RAV+RIKELLASKGPSV+GVRLGTK+RGCNGLSYTMNY ETRPKFDEEV VGGVTVFVEPSALMHVVGT MD+EETELSREFTF+NPNAKG CGCGESFNV
Sbjct:  156 RAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_008911150.1 (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETI38064.1 hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETK78282.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL31712.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL84940.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETM38109.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETN03377.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETO66833.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP07949.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >ETP35992.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 157.9 bits (398), Expect = 4.400e-35
Identity = 80/119 (67.23%), Postives = 88/119 (73.95%), Query Frame = 0 
Query:  157 PPTR---RTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            PPTR   R    PL LTD A  RIKELLA+K P  +G+RLG K RGCNGLSYTMNY + + K +EEVT  GV VFVEP AL HVVGT MDF+ T +S EF F NPNAKGSCGCGESFNV
Sbjct:   29 PPTRRRLRELPPPLNLTDAAAERIKELLANK-PDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVTKNGVRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_002997584.1 (iron-sulfur cluster assembly protein, putative [Phytophthora infestans T30-4] >EEY68599.1 iron-sulfur cluster assembly protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 155.2 bits (391), Expect = 2.900e-34
Identity = 78/119 (65.55%), Postives = 87/119 (73.11%), Query Frame = 0 
Query:  157 PPTR---RTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            PPTR   R    PL LTD A  RIKELLA+K P  +G+RLG K RGCNGLSYTMNY + + K +EEV+  G  VFVEP AL HVVGT MDF+ T +S EF F NPNAKGSCGCGESFNV
Sbjct:   29 PPTRRRLRELPPPLNLTDAAAERIKELLANK-PDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVSKNGARVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 146
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_024585263.1 (iron-sulfur protein [Plasmopara halstedii] >CEG48894.1 iron-sulfur protein [Plasmopara halstedii])

HSP 1 Score: 152.1 bits (383), Expect = 2.400e-33
Identity = 76/120 (63.33%), Postives = 85/120 (70.83%), Query Frame = 0 
Query:  153 SPSYPPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            +PS     R    PL+LTD A  RIKELL +K P  +G+RLG K RGCNGLSYTMNY E +   +EEV   GV VFVEP AL HVVGT MDF+ T +S EF F NPNAKGSCGCGESFNV
Sbjct:   29 TPSTRRRLRELPPPLKLTDAAATRIKELLVNK-PDAIGIRLGVKTRGCNGLSYTMNYAEKKENLEEEVNKNGVRVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 147
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_008911148.1 (hypothetical protein PPTG_15635 [Phytophthora parasitica INRA-310] >ETI38062.1 hypothetical protein F443_16080 [Phytophthora parasitica P1569] >ETK78280.1 hypothetical protein L915_15624 [Phytophthora parasitica] >ETL31710.1 hypothetical protein L916_15520 [Phytophthora parasitica] >ETL84938.1 hypothetical protein L917_15342 [Phytophthora parasitica] >ETM38107.1 hypothetical protein L914_15475 [Phytophthora parasitica] >ETN03375.1 hypothetical protein PPTG_15635 [Phytophthora parasitica INRA-310] >ETO66831.1 hypothetical protein F444_16064 [Phytophthora parasitica P1976] >ETP07947.1 hypothetical protein F441_15909 [Phytophthora parasitica CJ01A1] >ETP35990.1 hypothetical protein F442_15930 [Phytophthora parasitica P10297])

HSP 1 Score: 149.4 bits (376), Expect = 1.600e-32
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 0 
Query:  170 TDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            TD A  RIKELLA+K P  +G+RLG K RGCNGLSYTMNY + + K +EEVT  GV VFVEP AL HVVGT MDF+ T +S EF F NPNAKGSCGCGESFNV
Sbjct:   71 TDAAAERIKELLANK-PDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVTKNGVRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 172
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_009832302.1 (hypothetical protein H257_08194 [Aphanomyces astaci] >ETV77965.1 hypothetical protein H257_08194 [Aphanomyces astaci])

HSP 1 Score: 146.7 bits (369), Expect = 1.000e-31
Identity = 71/113 (62.83%), Postives = 85/113 (75.22%), Query Frame = 0 
Query:  160 RRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            RR   A ++LTD A ARIKEL+AS+ P  +G+RLG + RGC+GLSYTMNY   + K DEEV   GV VF+E  AL HVVGT MD++ T +S EFTF NPNAKG+CGCGESFNV
Sbjct:   24 RREVPAAIKLTDEAAARIKELMASR-PDAIGIRLGVRTRGCSGLSYTMNYATEKQKLDEEVAEKGVKVFIESKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 135
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_008872886.1 (hypothetical protein, variant [Aphanomyces invadans] >ETV98689.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 145.2 bits (365), Expect = 3.000e-31
Identity = 70/113 (61.95%), Postives = 86/113 (76.11%), Query Frame = 0 
Query:  160 RRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            RR   A ++LTD A ARIKEL+A++ P  +G+RLG + RGC+GLSYTMNY   + K DEEV+  GV VF+E  AL HVVGT MD++ T +S EFTF NPNAKG+CGCGESFNV
Sbjct:   22 RREIPAAIKLTDEAAARIKELMANQ-PDAIGIRLGVRTRGCSGLSYTMNYATEKQKLDEEVSDKGVKVFIESKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 133
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: GAX94727.1 (Hypothetical protein PINS_002635 [Pythium insidiosum])

HSP 1 Score: 142.5 bits (358), Expect = 1.900e-30
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 0 
Query:  170 TDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            TD A  RI+ELL +K P  +G+RLG + RGCNGLSYTMNY E +   +EEV+  GV VFVEP AL HVVGT MDF+ T +S EF F NPNAKGSCGCGESFNV
Sbjct:  823 TDAAADRIRELLENK-PDAIGIRLGVRTRGCNGLSYTMNYAEKKEMMEEEVSHNGVRVFVEPKALFHVVGTTMDFQTTPVSSEFVFENPNAKGSCGCGESFNV 924
[Close]
BLAST of NO04G04490 vs. NCBI_GenBank
Match: XP_012203209.1 (hypothetical protein SPRG_08579 [Saprolegnia parasitica CBS 223.65] >KDO26217.1 hypothetical protein SPRG_08579 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 142.1 bits (357), Expect = 2.500e-30
Identity = 70/115 (60.87%), Postives = 84/115 (73.04%), Query Frame = 0 
Query:  157 PPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFN 272
            P  RR   AP+ LT  A  RIKELL +K P  +G+R+G + RGC+GLSYTMNY   + KF+EEV   GV VFVEP AL H+VGT MD++ T +S EFTF NPNAKG+CGCGESFN
Sbjct:   17 PRVRREVPAPIILTQGAADRIKELLENK-PDAIGLRIGVRTRGCSGLSYTMNYATEKIKFEEEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFN 130
The following BLAST results are available for this feature:
BLAST of NO04G04490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855229.11.700e-5090.91iron-sulfur protein [Nannochloropsis gaditana CCMP... [more]
EWM28839.11.700e-5090.91iron-sulfur protein [Nannochloropsis gaditana][more]
XP_008911150.14.400e-3567.23hypothetical protein, variant 2 [Phytophthora para... [more]
XP_002997584.12.900e-3465.55iron-sulfur cluster assembly protein, putative [Ph... [more]
XP_024585263.12.400e-3363.33iron-sulfur protein [Plasmopara halstedii] >CEG488... [more]
XP_008911148.11.600e-3269.90hypothetical protein PPTG_15635 [Phytophthora para... [more]
XP_009832302.11.000e-3162.83hypothetical protein H257_08194 [Aphanomyces astac... [more]
XP_008872886.13.000e-3161.95hypothetical protein, variant [Aphanomyces invadan... [more]
GAX94727.11.900e-3066.02Hypothetical protein PINS_002635 [Pythium insidios... [more]
XP_012203209.12.500e-3060.87hypothetical protein SPRG_08579 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009342NSK009342Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04490.1NO04G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100199g3gene1769Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04490.1NO04G04490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04490 ID=NO04G04490|Name=NO04G04490|organism=Nannochloropsis oceanica|type=gene|length=819bp
ATGGCTAAGTCCACGTCCCGCACCGCCGCGGCGCTGATCCAGAGGGTGAT
AACGCAGGGCATGAGAGGAGGACGGGGAGTTTCGTCCATCTCTTCGTCTC
TTGCGTGCGCGAGCGCTGTAGGAATGGCCTCTCTAGCAGCAACGTCCGCT
GCCGCCTCCTCCTTGGCAATGGCCCGAGCACCCACGACAACACCAGCGGT
GACAATAGTAGGGCAGCAGCAAAGAGCTTGGGCGTCCACCGTGGCCGCCG
TCATCAGCCACGACAACATGTCTGGGGCGAGCCAGCAGCACCAGCAACAT
GAGCACCAAGCACCTTCATCATTCCCATCTTCCACCGGCCCGCAACCCAG
AACAAACACCGCCACTGCCACCGCGACCGCTTCTTCATCCTCTCAATCCC
TTCGTTATGACGACAATAGCAACAGCAGCACGACCGGCCCTACTCCCCCC
AACTCCTCCCCCTCGTACCCTCCTACCCGTCGCACCCGCGCAGCCCCCCT
CCAGCTCACGGATCGGGCCGTCGCTCGTATCAAAGAGCTCCTCGCCTCTA
AAGGCCCCAGCGTGGTGGGGGTGCGTCTGGGCACGAAAAAGAGGGGTTGC
AATGGGTTGTCTTACACGATGAACTACACCGAGACCCGGCCGAAATTTGA
CGAGGAGGTGACTGTGGGAGGGGTGACTGTGTTCGTGGAGCCCTCTGCAT
TAATGCACGTGGTCGGCACGAGAATGGACTTTGAAGAGACGGAGCTGTCG
AGAGAGTTTACATTTCACAATCCAAACGCGAAGGGCTCGTGTGGGTGTGG
GGAGAGCTTTAATGTTTAA
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protein sequence of NO04G04490.1

>NO04G04490.1-protein ID=NO04G04490.1-protein|Name=NO04G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MAKSTSRTAAALIQRVITQGMRGGRGVSSISSSLACASAVGMASLAATSA
AASSLAMARAPTTTPAVTIVGQQQRAWASTVAAVISHDNMSGASQQHQQH
EHQAPSSFPSSTGPQPRTNTATATATASSSSQSLRYDDNSNSSTTGPTPP
NSSPSYPPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGC
NGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELS
REFTFHNPNAKGSCGCGESFNV*
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Synonyms
Publications