NO04G04490.1, NO04G04490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04490.1
Unique NameNO04G04490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr4:1217450..1218268 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1217450..1218268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04490.1 vs.
Match: XP_005855229.1 (iron-sulfur protein [Nannochloropsis gaditana CCMP526]; EKU21131.1 iron-sulfur protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.8 bits (538), Expect = 2.600e-51
Identity = 126/197 (63.96%), Postives = 141/197 (71.57%), Query Frame = 0 
Query:   83 AVISHDNMSGASQQHQQ-HEHQAPSSFPSSTGPQPRTNTATATATASSSSQSLRYDDNSNSSTTGPTPPNSSP--SYP----PTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGCNGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELSREFTFHNPNAKGSCGCGESFNV 273
            A  +   +S    +H Q HEH  PS  P      P  + + A  +  SSS+     D S S      PP+  P  S+P    P RR RAAPLQLT+RAV+RIKELLASKGPSV+GVRLGTK+RGCNGLSYTMNY ETRPKFDEEV VGGVTVFVEPSALMHVVGT MD+EETELSREFTF+NPNAKG CGCGESFNV
Sbjct:    2 AAATTSKLSSMEVEHGQVHEH--PSQVPI-----PPASASNAPTSIDSSSR-----DKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 186
The following BLAST results are available for this feature:
BLAST of NO04G04490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855229.12.600e-5163.96iron-sulfur protein [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04490NO04G04490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04490.1NO04G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04490.1.cds1NO04G04490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04490.1 ID=NO04G04490.1|Name=NO04G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
ATGGCTAAGTCCACGTCCCGCACCGCCGCGGCGCTGATCCAGAGGGTGAT
AACGCAGGGCATGAGAGGAGGACGGGGAGTTTCGTCCATCTCTTCGTCTC
TTGCGTGCGCGAGCGCTGTAGGAATGGCCTCTCTAGCAGCAACGTCCGCT
GCCGCCTCCTCCTTGGCAATGGCCCGAGCACCCACGACAACACCAGCGGT
GACAATAGTAGGGCAGCAGCAAAGAGCTTGGGCGTCCACCGTGGCCGCCG
TCATCAGCCACGACAACATGTCTGGGGCGAGCCAGCAGCACCAGCAACAT
GAGCACCAAGCACCTTCATCATTCCCATCTTCCACCGGCCCGCAACCCAG
AACAAACACCGCCACTGCCACCGCGACCGCTTCTTCATCCTCTCAATCCC
TTCGTTATGACGACAATAGCAACAGCAGCACGACCGGCCCTACTCCCCCC
AACTCCTCCCCCTCGTACCCTCCTACCCGTCGCACCCGCGCAGCCCCCCT
CCAGCTCACGGATCGGGCCGTCGCTCGTATCAAAGAGCTCCTCGCCTCTA
AAGGCCCCAGCGTGGTGGGGGTGCGTCTGGGCACGAAAAAGAGGGGTTGC
AATGGGTTGTCTTACACGATGAACTACACCGAGACCCGGCCGAAATTTGA
CGAGGAGGTGACTGTGGGAGGGGTGACTGTGTTCGTGGAGCCCTCTGCAT
TAATGCACGTGGTCGGCACGAGAATGGACTTTGAAGAGACGGAGCTGTCG
AGAGAGTTTACATTTCACAATCCAAACGCGAAGGGCTCGTGTGGGTGTGG
GGAGAGCTTTAATGTTTAA
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protein sequence of NO04G04490.1

>NO04G04490.1-protein ID=NO04G04490.1-protein|Name=NO04G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MAKSTSRTAAALIQRVITQGMRGGRGVSSISSSLACASAVGMASLAATSA
AASSLAMARAPTTTPAVTIVGQQQRAWASTVAAVISHDNMSGASQQHQQH
EHQAPSSFPSSTGPQPRTNTATATATASSSSQSLRYDDNSNSSTTGPTPP
NSSPSYPPTRRTRAAPLQLTDRAVARIKELLASKGPSVVGVRLGTKKRGC
NGLSYTMNYTETRPKFDEEVTVGGVTVFVEPSALMHVVGTRMDFEETELS
REFTFHNPNAKGSCGCGESFNV*
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mRNA from alignment at chr4:1217450..1218268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04490.1 ID=NO04G04490.1|Name=NO04G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp|location=Sequence derived from alignment at chr4:1217450..1218268+ (Nannochloropsis oceanica)
ATGGCTAAGTCCACGTCCCGCACCGCCGCGGCGCTGATCCAGAGGGTGAT
AACGCAGGGCATGAGAGGAGGACGGGGAGTTTCGTCCATCTCTTCGTCTC
TTGCGTGCGCGAGCGCTGTAGGAATGGCCTCTCTAGCAGCAACGTCCGCT
GCCGCCTCCTCCTTGGCAATGGCCCGAGCACCCACGACAACACCAGCGGT
GACAATAGTAGGGCAGCAGCAAAGAGCTTGGGCGTCCACCGTGGCCGCCG
TCATCAGCCACGACAACATGTCTGGGGCGAGCCAGCAGCACCAGCAACAT
GAGCACCAAGCACCTTCATCATTCCCATCTTCCACCGGCCCGCAACCCAG
AACAAACACCGCCACTGCCACCGCGACCGCTTCTTCATCCTCTCAATCCC
TTCGTTATGACGACAATAGCAACAGCAGCACGACCGGCCCTACTCCCCCC
AACTCCTCCCCCTCGTACCCTCCTACCCGTCGCACCCGCGCAGCCCCCCT
CCAGCTCACGGATCGGGCCGTCGCTCGTATCAAAGAGCTCCTCGCCTCTA
AAGGCCCCAGCGTGGTGGGGGTGCGTCTGGGCACGAAAAAGAGGGGTTGC
AATGGGTTGTCTTACACGATGAACTACACCGAGACCCGGCCGAAATTTGA
CGAGGAGGTGACTGTGGGAGGGGTGACTGTGTTCGTGGAGCCCTCTGCAT
TAATGCACGTGGTCGGCACGAGAATGGACTTTGAAGAGACGGAGCTGTCG
AGAGAGTTTACATTTCACAATCCAAACGCGAAGGGCTCGTGTGGGTGTGG
GGAGAGCTTTAATGTTTAA
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Coding sequence (CDS) from alignment at chr4:1217450..1218268+

>NO04G04490.1 ID=NO04G04490.1|Name=NO04G04490.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr4:1217450..1218268+ (Nannochloropsis oceanica)
ATGGCTAAGTCCACGTCCCGCACCGCCGCGGCGCTGATCCAGAGGGTGAT
AACGCAGGGCATGAGAGGAGGACGGGGAGTTTCGTCCATCTCTTCGTCTC
TTGCGTGCGCGAGCGCTGTAGGAATGGCCTCTCTAGCAGCAACGTCCGCT
GCCGCCTCCTCCTTGGCAATGGCCCGAGCACCCACGACAACACCAGCGGT
GACAATAGTAGGGCAGCAGCAAAGAGCTTGGGCGTCCACCGTGGCCGCCG
TCATCAGCCACGACAACATGTCTGGGGCGAGCCAGCAGCACCAGCAACAT
GAGCACCAAGCACCTTCATCATTCCCATCTTCCACCGGCCCGCAACCCAG
AACAAACACCGCCACTGCCACCGCGACCGCTTCTTCATCCTCTCAATCCC
TTCGTTATGACGACAATAGCAACAGCAGCACGACCGGCCCTACTCCCCCC
AACTCCTCCCCCTCGTACCCTCCTACCCGTCGCACCCGCGCAGCCCCCCT
CCAGCTCACGGATCGGGCCGTCGCTCGTATCAAAGAGCTCCTCGCCTCTA
AAGGCCCCAGCGTGGTGGGGGTGCGTCTGGGCACGAAAAAGAGGGGTTGC
AATGGGTTGTCTTACACGATGAACTACACCGAGACCCGGCCGAAATTTGA
CGAGGAGGTGACTGTGGGAGGGGTGACTGTGTTCGTGGAGCCCTCTGCAT
TAATGCACGTGGTCGGCACGAGAATGGACTTTGAAGAGACGGAGCTGTCG
AGAGAGTTTACATTTCACAATCCAAACGCGAAGGGCTCGTGTGGGTGTGG
GGAGAGCTTTAATGTTTAA
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Synonyms
Publications