NO04G04460, NO04G04460 (gene) Nannochloropsis oceanica

Overview
NameNO04G04460
Unique NameNO04G04460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2007
Alignment locationchr4:1211946..1213952 -

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Properties
Property NameValue
DescriptionPeroxiredoxin 5, atypical 2-Cys peroxiredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1211946..1213952 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR037944PRX5-like
IPR013740Redoxin
Homology
BLAST of NO04G04460 vs. NCBI_GenBank
Match: XP_005855233.1 (peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526] >EKU21135.1 peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 255.4 bits (651), Expect = 1.500e-64
Identity = 125/179 (69.83%), Postives = 155/179 (86.59%), Query Frame = 0
Query:   16 RGARPASLFARPVLSLSRRNVSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            R  RP++L     L+L+ R ++ G++VP + LKEV GD V+DV S +FF+G KVVLIGLPAAFSPTCSEKHVPGYLAH  +FK+KG+DK+AVLAVNDFFTMKAWAK QG+G +++F+ADGNGE+T ALG+ELDL+KA+LG RCKRFSMV+EDG+VK+ +IEPDGTGYTVSSAE+TLKQV
Sbjct:    7 RVRRPSNL--PSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRG-KVVLIGLPAAFSPTCSEKHVPGYLAHARDFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: EWM28833.1 (redoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 254.2 bits (648), Expect = 3.200e-64
Identity = 125/179 (69.83%), Postives = 153/179 (85.47%), Query Frame = 0
Query:   16 RGARPASLFARPVLSLSRRNVSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            R  RP +L     L+L+ R ++ G++VP + LKEV GD V+DV S +FF+G KVVLIGLPAAFSPTCSEKHVPGYLAH   FK+KG+DK+AVLAVNDFFTMKAWAK QG+G +++F+ADGNGE+T ALG+ELDL+KA+LG RCKRFSMV+EDG+VK+ +IEPDGTGYTVSSAE+TLKQV
Sbjct:    7 RVRRPTNL--PSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRG-KVVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: WP_009451348.1 (peroxiredoxin [Nitratireductor indicus] >EKF41333.1 redoxin [Nitratireductor indicus C115] >SFQ72750.1 Peroxiredoxin [Nitratireductor indicus])

HSP 1 Score: 163.3 bits (412), Expect = 7.500e-37
Identity = 78/159 (49.06%), Postives = 110/159 (69.18%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            +SVG ++P   LK+V  D   DV + +FF G+KVVL G+P AF+PTCS  H+PG++ + +    KGID VAV++VND F MKAWA   G   K+TFL+DGNG++T+ALG+++DLSK  LG R KR+SM+V++GVV A  +E +      S A   L+Q+
Sbjct:    3 ISVGDRIPEASLKQVDTDGAKDVSTNDFFAGRKVVLFGVPGAFTPTCSNNHLPGFVENRDAIGAKGIDDVAVISVNDHFVMKAWAGFTGAEDKITFLSDGNGDVTRALGLDIDLSKGGLGARSKRYSMIVDNGVVTAVNVEENPGEAVTSGAARILEQL 161          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: OJY06430.1 (peroxiredoxin [Rhizobiales bacterium 63-22])

HSP 1 Score: 162.5 bits (410), Expect = 1.300e-36
Identity = 83/159 (52.20%), Postives = 106/159 (66.67%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            + VG ++PA   K    D VND+ +   FKGKKVVL  +P AF+PTC+  H+PGYL H +E   KG+D++AV+AVND F M AWA++ G   K+ FLADG+   TKA G++LDLS   LGVR KR+S +VEDGVVKA  IE        SSAE  LKQ+
Sbjct:    3 IKVGDRLPAATFKVKTADGVNDMTTDEIFKGKKVVLFAVPGAFTPTCTVNHLPGYLEHHDEILAKGVDRIAVVAVNDPFVMGAWAQSTGGEGKILFLADGSAGFTKAAGLDLDLSGGGLGVRSKRYSAIVEDGVVKALNIEEQPGKAETSSAEALLKQL 161          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: WP_083591138.1 (peroxiredoxin [Aurantimonas sp. 22II-16-19i] >ORE97432.1 peroxiredoxin-like protein [Aurantimonas sp. 22II-16-19i])

HSP 1 Score: 161.4 bits (407), Expect = 2.900e-36
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            ++VG ++P   +K    D   D+ + + F GK VVL G+P AF+PTCS  H+PG+L H +EF++KG+D +AV+AVND F M AW K+     K+ FL+DGNGE TKALG+++DLS A LG R KR+SM+VEDGVVK   IE        SSAE  L+Q+
Sbjct:    3 IAVGDKIPNATVKTRTEDGPADLSTESIFSGKTVVLFGVPGAFTPTCSMNHLPGFLTHNDEFRQKGVDTIAVVAVNDIFVMGAWEKSTEASGKILFLSDGNGEFTKALGLDIDLSVAGLGTRSKRYSMLVEDGVVKQLNIEESPGQADKSSAEALLEQM 161          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: PPR31245.1 (putative peroxiredoxin [Alphaproteobacteria bacterium MarineAlpha9_Bin6] >PPR32575.1 putative peroxiredoxin [Alphaproteobacteria bacterium MarineAlpha9_Bin5])

HSP 1 Score: 161.0 bits (406), Expect = 3.700e-36
Identity = 76/159 (47.80%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            + VG +VP++  K +  D + D+ + + F+GKKVVL  +P AF+PTCS KHVPG+L H  E K KG+DK+  L+VND F M AW K +G G  +  LADGNG+ T+A+ + LD S   LG R +R++M+VE+G V A  +E DG G +VSSAEN + ++
Sbjct:    3 IKVGDKVPSITFKHLGSDGMEDISTKDLFEGKKVVLFAVPGAFTPTCSAKHVPGFLEHAAEIKSKGVDKIVCLSVNDAFVMDAWGKDRGTGNNILMLADGNGDFTRAIDLGLDGSGFGLGARSQRYAMIVENGTVTALEVE-DGPGLSVSSAENIVSKL 160          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: WP_025029501.1 (peroxiredoxin [Nitratireductor aquibiodomus])

HSP 1 Score: 159.5 bits (402), Expect = 1.100e-35
Identity = 77/159 (48.43%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            VSVG ++P    K+V  +  NDV + +FF G+KVVL G+P AF+PTCS  H+PG++ + +  + +G D +AV++VND F MKAWA   G   K+TF+ADGNG+ T+ALG+++DLS A LG R KR+SM+V+DGVV A  IE +      S A   L Q+
Sbjct:    3 VSVGDRIPDTNFKKVSAEGANDVAAPDFFAGRKVVLFGVPGAFTPTCSNSHLPGFVENGDAIRARGADDIAVISVNDAFVMKAWAGFTGAEDKITFIADGNGDFTRALGLDIDLSVAGLGNRSKRYSMIVDDGVVSAINIEENPGQAETSGAARILDQL 161          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: WP_007009816.1 (peroxiredoxin [Nitratireductor aquibiodomus] >EIM72874.1 redoxin [Nitratireductor aquibiodomus RA22])

HSP 1 Score: 159.5 bits (402), Expect = 1.100e-35
Identity = 77/159 (48.43%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            VSVG ++P    K+V  +  NDV + +FF G+KVVL G+P AF+PTCS  H+PG++ + +  + +G D +AV++VND F MKAWA   G   K+TF+ADGNG+ T+ALG+++DLS A LG R KR+SM+V+DGVV A  IE +      S A   L Q+
Sbjct:    3 VSVGDRIPDTNFKKVSAEGANDVAAPDFFAGRKVVLFGVPGAFTPTCSNSHLPGFVENGDAIRARGADDIAVISVNDAFVMKAWAGFTGAEDKITFIADGNGDFTRALGLDIDLSVAGLGNRSKRYSMIVDDGVVSAINIEENPGQAETSGAARILDQL 161          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: WP_024349997.1 (peroxiredoxin [Aurantimonas coralicida])

HSP 1 Score: 159.1 bits (401), Expect = 1.400e-35
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            + +G ++P   LK    D   D+ +   F GKKVVL  +P AF+PTCS  H+PG+L H +E + KG+D +AV+AVND F M AW K      K+ FL+DGNGE TKALG+++DLS A LG+R KR+SM+VEDGVVK+  +E        S+AE  L+Q+
Sbjct:    3 IGIGDKLPNATLKTKTSDGPADLSTDEIFAGKKVVLFAVPGAFTPTCSMNHLPGFLTHNDEIRAKGVDTIAVVAVNDIFVMGAWEKANDAAGKILFLSDGNGEFTKALGLDIDLSVAGLGLRSKRYSMIVEDGVVKSLNVEESPGQAERSTAEAVLEQL 161          
BLAST of NO04G04460 vs. NCBI_GenBank
Match: WP_084411657.1 (peroxiredoxin [Fulvimarina manganoxydans] >SMD00589.1 Peroxiredoxin [Fulvimarina manganoxydans])

HSP 1 Score: 158.7 bits (400), Expect = 1.900e-35
Identity = 75/159 (47.17%), Postives = 109/159 (68.55%), Query Frame = 0
Query:   36 VSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            + VG  +P    +   GD + D+ + + FKGK VVL G+P AF+PTCS  H+PG+LA+ +E + KG+D++AV++VND F M+AW + +    K+ FL+DGNGE  KA G+++DLS  +LG+R KRFSM+V+DGVV + AIE        SSAE  L+Q+
Sbjct:    3 IGVGDTLPNATFRTKTGDGMADLSTDDVFKGKTVVLFGVPGAFTPTCSMNHLPGFLAYNDEIRAKGVDEIAVVSVNDPFVMQAWEEAKEASGKILFLSDGNGEFVKAAGLDIDLSAGMLGIRSKRFSMIVKDGVVASLAIEDSPGQAEKSSAEEILQQL 161          
The following BLAST results are available for this feature:
BLAST of NO04G04460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855233.11.500e-6469.83peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nan... [more]
EWM28833.13.200e-6469.83redoxin domain protein [Nannochloropsis gaditana][more]
WP_009451348.17.500e-3749.06peroxiredoxin [Nitratireductor indicus] >EKF41333.... [more]
OJY06430.11.300e-3652.20peroxiredoxin [Rhizobiales bacterium 63-22][more]
WP_083591138.12.900e-3650.31peroxiredoxin [Aurantimonas sp. 22II-16-19i] >ORE9... [more]
PPR31245.13.700e-3647.80putative peroxiredoxin [Alphaproteobacteria bacter... [more]
WP_025029501.11.100e-3548.43peroxiredoxin [Nitratireductor aquibiodomus][more]
WP_007009816.11.100e-3548.43peroxiredoxin [Nitratireductor aquibiodomus] >EIM7... [more]
WP_024349997.11.400e-3548.43peroxiredoxin [Aurantimonas coralicida][more]
WP_084411657.11.900e-3547.17peroxiredoxin [Fulvimarina manganoxydans] >SMD0058... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009346NSK009346Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04460.1NO04G04460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100199g1gene1771Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04460.1NO04G04460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04460 ID=NO04G04460|Name=NO04G04460|organism=Nannochloropsis oceanica|type=gene|length=2007bp
TGTCTGCTTGATATGTGCCTGTCTAAGCGAGTTGCATGCATGAAAGAATG
AGTGAGCTTAGGAAAGGGGAAGGCGGGAGGAAGGGAGCAAGGGTGGGGAG
GTCGCCTTGTAGAGAGGGCAAGTCTAGACTAGACGGCATGTCTTACAAAT
GTACCGGCCTCCACAAAGACCATGCGACGACAAAGCTTGGCTTCTTTAAT
CGGCCTTCCTGTGAGGCCTCATCTGACCTTGCCCTGTCACGCCCATACAT
GCACCTCCTGCACGCATGCTTTGAGTTTGCTTTGATCCTTGCCCTTTGGC
TTGCATGCACAAGCGATCGCAGCGCTCGGCGTTTCCCGTGTTGCTTGAGA
AAGAAGACACGTCTCCTCCCGCTCCTGCCGCTATAAAGGGATAAATAGGC
TAGGCAAGGGTTATGTGAGGGCTCAGCCTCTCGCCAAAACTCGTCCGATG
CGCCTCACGACCTCCCAGGAGTCCTCCTTCGACCCGTCATAAAGCAAGCA
ATGCAATAGAGCTGACCAAGTCCACGCAATCTCAAACCCTTCACACAGGC
ACCAGTGAGAGCTTGTACCATCTATCATGATTTCCTCGTTCTCGTCAGTC
ACGGCGGCTGCCTTTATCCGTCGCGGTGCTCGTCCAGCTAGCCTCTTTGC
TCGCCCCGTCCTTTCCCTCTCTCGACGCAACGTAAGCGTGGGTGCCCAGG
TCCCGGCCGTCCAGCTCAAGGAGgtacgcccattcacgagccatatagat
gcggttattttgccctcgctcccgagtggttgcgtgtgtgtctagctaga
aaacacagggtttgtgcatagaagaggaatgtatcgtaaaaacttgctta
ggtagaggaatgagaggcagaagaggagagatgaaggaatgtaggggtag
cggggattttaaattcgttagagtctgcgatggatgttttcccgcatcgt
atgattcttcctccccactcaaatactgcctgacccccgtcctcttttcg
atctcattcttccccccaacctttacccgaaatcgggcgagtataaaggg
ttgaatagaacgggtgcagcaagtagaaaagatacggaagattacaaaaa
ttggtcacaggatatcgacagtctttccgaatcccttccactcttcagaa
taatctcatccttcctgaacgtaaaatcctgctatccctctcctcatccc
tcccactcttacatcgcccctcgcttgccttagtactctttgttcactcc
ctctttcctgtctttaaccatgtccatgcgtactcccacataccatccgc
tcctccccctctccatccaaacagGTCGTTGGCGACGATGTCAATGACGT
TTTATCCACCAACTTTTTCAAAGGCAAGAAGGTGGTCTTGATTGGACTCC
CTGCTGCCTTCTCCCCCACTTGCAGCGAGAAGCATGTCCCGGGGTATCTT
GCTCACATCGAGGAGTTTAAGAAGAAGGGAATCGATAAGGTTGCTGTGCT
TGCAGTGAACGACTTCTTTACCATGAAGGCCTGGGCCAAGACCCAGGGGG
TAGGGACAAAGTTGACTTTTTTGGCGGATGGGAACGGCGAAATGACTAAA
GCACTGGGCGTTGAGCTGGACTTGAGCAAGGCATTATTGGGAGTAAGATG
CAAGAGGTTCTCGATGGTTGTGGAGGATGGGGTGGTTAAGGCCGCGGCGA
TCGAGCCCGATGGCACCGGATATACGGTAAGCTCGGCGGAGAACACGTTA
AAGCAGGTGTAGGTGTGCCGTGCAAAAATAGCCATGGCCTTTTCTACAGG
GGGATACAGATGAAATTCCGGGGGAATCATGCAATTATAGGCTGTCAAAG
CGCAATATTGGGACCCTCGAATGGCCCTCGAGTGGTGCGGAACGGACCAT
CGATACGAGAGATGAGAGATCTCTTGATCTCAAGTATATCAACGTCTTGG
TTATAGAAATAAGGCTAAGGCTTCGTTTGCCTCGAAATGAAAGCCACAGT
GTCCAGA
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protein sequence of NO04G04460.1

>NO04G04460.1-protein ID=NO04G04460.1-protein|Name=NO04G04460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MISSFSSVTAAAFIRRGARPASLFARPVLSLSRRNVSVGAQVPAVQLKEV
VGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKK
GIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLS
KALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV*
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Synonyms
Publications