NO04G04460.1, NO04G04460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04460.1
Unique NameNO04G04460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1406
Alignment locationchr4:1211946..1213952 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1211946..1213952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04460.1 vs.
Match: XP_005855233.1 (peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526]; EKU21135.1 peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 255.0 bits (650), Expect = 1.900e-64
Identity = 125/179 (69.83%), Postives = 156/179 (87.15%), Query Frame = 0 
Query:   16 RGARPASLFARPVLSLSRRNVSVGAQVPAVQLKEVVGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKKGIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLSKALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV 195
            R  RP++L +   L+L+ R ++ G++VP + LKEV GD V+DV S +FF+G KVVLIGLPAAFSPTCSEKHVPGYLAH  +FK+KG+DK+AVLAVNDFFTMKAWAK QG+G +++F+ADGNGE+T ALG+ELDL+KA+LG RCKRFSMV+EDG+VK+ +IEPDGTGYTVSSAE+TLKQV
Sbjct:    7 RVRRPSNLPS--FLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRG-KVVLIGLPAAFSPTCSEKHVPGYLAHARDFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
The following BLAST results are available for this feature:
BLAST of NO04G04460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855233.11.900e-6469.83peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04460NO04G04460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04460.1NO04G04460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04460.1.cds1NO04G04460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04460.1.cds2NO04G04460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04460.1 ID=NO04G04460.1|Name=NO04G04460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
TGTCTGCTTGATATGTGCCTGTCTAAGCGAGTTGCATGCATGAAAGAATG
AGTGAGCTTAGGAAAGGGGAAGGCGGGAGGAAGGGAGCAAGGGTGGGGAG
GTCGCCTTGTAGAGAGGGCAAGTCTAGACTAGACGGCATGTCTTACAAAT
GTACCGGCCTCCACAAAGACCATGCGACGACAAAGCTTGGCTTCTTTAAT
CGGCCTTCCTGTGAGGCCTCATCTGACCTTGCCCTGTCACGCCCATACAT
GCACCTCCTGCACGCATGCTTTGAGTTTGCTTTGATCCTTGCCCTTTGGC
TTGCATGCACAAGCGATCGCAGCGCTCGGCGTTTCCCGTGTTGCTTGAGA
AAGAAGACACGTCTCCTCCCGCTCCTGCCGCTATAAAGGGATAAATAGGC
TAGGCAAGGGTTATGTGAGGGCTCAGCCTCTCGCCAAAACTCGTCCGATG
CGCCTCACGACCTCCCAGGAGTCCTCCTTCGACCCGTCATAAAGCAAGCA
ATGCAATAGAGCTGACCAAGTCCACGCAATCTCAAACCCTTCACACAGGC
ACCAGTGAGAGCTTGTACCATCTATCATGATTTCCTCGTTCTCGTCAGTC
ACGGCGGCTGCCTTTATCCGTCGCGGTGCTCGTCCAGCTAGCCTCTTTGC
TCGCCCCGTCCTTTCCCTCTCTCGACGCAACGTAAGCGTGGGTGCCCAGG
TCCCGGCCGTCCAGCTCAAGGAGGTCGTTGGCGACGATGTCAATGACGTT
TTATCCACCAACTTTTTCAAAGGCAAGAAGGTGGTCTTGATTGGACTCCC
TGCTGCCTTCTCCCCCACTTGCAGCGAGAAGCATGTCCCGGGGTATCTTG
CTCACATCGAGGAGTTTAAGAAGAAGGGAATCGATAAGGTTGCTGTGCTT
GCAGTGAACGACTTCTTTACCATGAAGGCCTGGGCCAAGACCCAGGGGGT
AGGGACAAAGTTGACTTTTTTGGCGGATGGGAACGGCGAAATGACTAAAG
CACTGGGCGTTGAGCTGGACTTGAGCAAGGCATTATTGGGAGTAAGATGC
AAGAGGTTCTCGATGGTTGTGGAGGATGGGGTGGTTAAGGCCGCGGCGAT
CGAGCCCGATGGCACCGGATATACGGTAAGCTCGGCGGAGAACACGTTAA
AGCAGGTGTAGGTGTGCCGTGCAAAAATAGCCATGGCCTTTTCTACAGGG
GGATACAGATGAAATTCCGGGGGAATCATGCAATTATAGGCTGTCAAAGC
GCAATATTGGGACCCTCGAATGGCCCTCGAGTGGTGCGGAACGGACCATC
GATACGAGAGATGAGAGATCTCTTGATCTCAAGTATATCAACGTCTTGGT
TATAGAAATAAGGCTAAGGCTTCGTTTGCCTCGAAATGAAAGCCACAGTG
TCCAGA
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protein sequence of NO04G04460.1

>NO04G04460.1-protein ID=NO04G04460.1-protein|Name=NO04G04460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MISSFSSVTAAAFIRRGARPASLFARPVLSLSRRNVSVGAQVPAVQLKEV
VGDDVNDVLSTNFFKGKKVVLIGLPAAFSPTCSEKHVPGYLAHIEEFKKK
GIDKVAVLAVNDFFTMKAWAKTQGVGTKLTFLADGNGEMTKALGVELDLS
KALLGVRCKRFSMVVEDGVVKAAAIEPDGTGYTVSSAENTLKQV*
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mRNA from alignment at chr4:1211946..1213952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04460.1 ID=NO04G04460.1|Name=NO04G04460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at chr4:1211946..1213952- (Nannochloropsis oceanica)
TGTCTGCTTGATATGTGCCTGTCTAAGCGAGTTGCATGCATGAAAGAATG
AGTGAGCTTAGGAAAGGGGAAGGCGGGAGGAAGGGAGCAAGGGTGGGGAG
GTCGCCTTGTAGAGAGGGCAAGTCTAGACTAGACGGCATGTCTTACAAAT
GTACCGGCCTCCACAAAGACCATGCGACGACAAAGCTTGGCTTCTTTAAT
CGGCCTTCCTGTGAGGCCTCATCTGACCTTGCCCTGTCACGCCCATACAT
GCACCTCCTGCACGCATGCTTTGAGTTTGCTTTGATCCTTGCCCTTTGGC
TTGCATGCACAAGCGATCGCAGCGCTCGGCGTTTCCCGTGTTGCTTGAGA
AAGAAGACACGTCTCCTCCCGCTCCTGCCGCTATAAAGGGATAAATAGGC
TAGGCAAGGGTTATGTGAGGGCTCAGCCTCTCGCCAAAACTCGTCCGATG
CGCCTCACGACCTCCCAGGAGTCCTCCTTCGACCCGTCATAAAGCAAGCA
ATGCAATAGAGCTGACCAAGTCCACGCAATCTCAAACCCTTCACACAGGC
ACCAGTGAGAGCTTGTACCATCTATCATGATTTCCTCGTTCTCGTCAGTC
ACGGCGGCTGCCTTTATCCGTCGCGGTGCTCGTCCAGCTAGCCTCTTTGC
TCGCCCCGTCCTTTCCCTCTCTCGACGCAACGTAAGCGTGGGTGCCCAGG
TCCCGGCCGTCCAGCTCAAGGAGGTACGCCCATTCACGAGCCATATAGAT
GCGGTTATTTTGCCCTCGCTCCCGAGTGGTTGCGTGTGTGTCTAGCTAGA
AAACACAGGGTTTGTGCATAGAAGAGGAATGTATCGTAAAAACTTGCTTA
GGTAGAGGAATGAGAGGCAGAAGAGGAGAGATGAAGGAATGTAGGGGTAG
CGGGGATTTTAAATTCGTTAGAGTCTGCGATGGATGTTTTCCCGCATCGT
ATGATTCTTCCTCCCCACTCAAATACTGCCTGACCCCCGTCCTCTTTTCG
ATCTCATTCTTCCCCCCAACCTTTACCCGAAATCGGGCGAGTATAAAGGG
TTGAATAGAACGGGTGCAGCAAGTAGAAAAGATACGGAAGATTACAAAAA
TTGGTCACAGGATATCGACAGTCTTTCCGAATCCCTTCCACTCTTCAGAA
TAATCTCATCCTTCCTGAACGTAAAATCCTGCTATCCCTCTCCTCATCCC
TCCCACTCTTACATCGCCCCTCGCTTGCCTTAGTACTCTTTGTTCACTCC
CTCTTTCCTGTCTTTAACCATGTCCATGCGTACTCCCACATACCATCCGC
TCCTCCCCCTCTCCATCCAAACAGGTCGTTGGCGACGATGTCAATGACGT
TTTATCCACCAACTTTTTCAAAGGCAAGAAGGTGGTCTTGATTGGACTCC
CTGCTGCCTTCTCCCCCACTTGCAGCGAGAAGCATGTCCCGGGGTATCTT
GCTCACATCGAGGAGTTTAAGAAGAAGGGAATCGATAAGGTTGCTGTGCT
TGCAGTGAACGACTTCTTTACCATGAAGGCCTGGGCCAAGACCCAGGGGG
TAGGGACAAAGTTGACTTTTTTGGCGGATGGGAACGGCGAAATGACTAAA
GCACTGGGCGTTGAGCTGGACTTGAGCAAGGCATTATTGGGAGTAAGATG
CAAGAGGTTCTCGATGGTTGTGGAGGATGGGGTGGTTAAGGCCGCGGCGA
TCGAGCCCGATGGCACCGGATATACGGTAAGCTCGGCGGAGAACACGTTA
AAGCAGGTGTAGGTGTGCCGTGCAAAAATAGCCATGGCCTTTTCTACAGG
GGGATACAGATGAAATTCCGGGGGAATCATGCAATTATAGGCTGTCAAAG
CGCAATATTGGGACCCTCGAATGGCCCTCGAGTGGTGCGGAACGGACCAT
CGATACGAGAGATGAGAGATCTCTTGATCTCAAGTATATCAACGTCTTGG
TTATAGAAATAAGGCTAAGGCTTCGTTTGCCTCGAAATGAAAGCCACAGT
GTCCAGA
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Coding sequence (CDS) from alignment at chr4:1211946..1213952-

>NO04G04460.1 ID=NO04G04460.1|Name=NO04G04460.1|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr4:1211946..1213952- (Nannochloropsis oceanica)
ATGATTTCCTCGTTCTCGTCAGTCACGGCGGCTGCCTTTATCCGTCGCGG
TGCTCGTCCAGCTAGCCTCTTTGCTCGCCCCGTCCTTTCCCTCTCTCGAC
GCAACGTAAGCGTGGGTGCCCAGGTCCCGGCCGTCCAGCTCAAGGAGGTC
GTTGGCGACGATGTCAATGACGTTTTATCCACCAACTTTTTCAAAGGCAA
GAAGGTGGTCTTGATTGGACTCCCTGCTGCCTTCTCCCCCACTTGCAGCG
AGAAGCATGTCCCGGGGTATCTTGCTCACATCGAGGAGTTTAAGAAGAAG
GGAATCGATAAGGTTGCTGTGCTTGCAGTGAACGACTTCTTTACCATGAA
GGCCTGGGCCAAGACCCAGGGGGTAGGGACAAAGTTGACTTTTTTGGCGG
ATGGGAACGGCGAAATGACTAAAGCACTGGGCGTTGAGCTGGACTTGAGC
AAGGCATTATTGGGAGTAAGATGCAAGAGGTTCTCGATGGTTGTGGAGGA
TGGGGTGGTTAAGGCCGCGGCGATCGAGCCCGATGGCACCGGATATACGG
TAAGCTCGGCGGAGAACACGTTAAAGCAGGTGTAG
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Synonyms
Publications