NO04G04440, NO04G04440 (gene) Nannochloropsis oceanica

Overview
NameNO04G04440
Unique NameNO04G04440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1562
Alignment locationchr4:1206049..1207610 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1206049..1207610 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G04440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04440.1NO04G04440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579558gene_2231Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04440.1NO04G04440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04440 ID=NO04G04440|Name=NO04G04440|organism=Nannochloropsis oceanica|type=gene|length=1562bp
CTTCGGAGGATCTATCGCTGCATGGGCCACCTCCTTTTTCTTCCGGAAAT
GGTGTCCACACCATTGTTGCTTGTATTTTGGGTAGACAGGCATGGAATGT
TGCCCTATTTGGCTTCTTATTTGTCCTTGTCTCTTCCGTCAAAGTGTCCT
AGTCCCTACAGTGGTAAAATGTTTGCTTGCCATTGCCAAGCTCAACGGAC
GCTCGGACATGGACTCTCTAAAATATTGACGCCCCAAAGTAAACAAAGCG
TATGTATATATGTATATATGTATATGTATACAATATTGTTCATTTTTGCT
GACCGCCTGAATTTAAACTCGCAATGCGATGCGTAGTTTGCTAATTGCTC
GATTTAATGCAGGTTTCAGACCTTCTGAGGGCGGCTTTCATAGAAAACGT
TGCGGGACATGCACCACCAGCGGGAGGGGAGGGGAGGACAAATGATCCAT
TGCATGCCTAACCTACCACCACACTGCCCCTCGGTCCACCTCCTCAAACA
GAATATGGCGATAGGACGGCCCTACGTTATGCTGGTGCTCGTCACCCTCT
TCCTCGCCACCTTGTCCACCGTGCGTGCCGACGCTTGTCCTACGCCCGAG
TACACCGTGAAGCCCTCTGGCCGAGGCAGGCGTGTGTGGGCAGATAAGGT
GACCAGGATTAGATTGACCATCAAGAATACTTCCCCATTTGCGCTTGACA
ATTACGTGATCCGAATGGGTGTACCTACGGACCACGTCACCTACCAATCA
TATAATGTATTGGGACACACGGCGAGGAGGAAGGCAATCACCAACTTTCT
CACGAAGCCTGATGGTAGCCTTGAGTGGACCCTCTTTGACATGCCTGCAG
GAAAGGACTTCAGATTCCTCATTTTTGTGAAAATTCGTGATTGCGCTTCT
CTTGGCGCCATCTCCTTTCCTATCTCCAGCTTTTATAATAGAGTAAATGA
TACTTGCCCCTTCGACGGACCTGCTGCCAAAATGCGCATCGTCATGCCCA
AAAAAACAAAGGGGAATAGGCGCCCTCCCATGCCCACAGGATGTCCTACC
CCGGCTCCCACCATTGCTCCCAGTGCCGCTCCCAGCCTTGCGCCCATCTA
ATCTGGTTGTGGACCCGAGGTGGTTTTTCTACTTGGTAATACGATGCTTT
GGCGAAGGGGGAGGCATGCGAGTTGCTGCGAAGTAAATGGTGGCCTTTGA
GAAGTGCCATTTGAGAAGTGCCATTTGAGAAGTGCATTCAAATGAAAGGA
AGAAAGAGGACACAGACGCCCTGGCACTCGGGACAGCGGCTGTACGGTGG
AGGAGGAGGCTGAGGACGAGGACGAGGACGGGGACGGGGACGAGGAAGAC
GAGGAAAATTGAATTGCATGTTAGGAGGATATGCGAAAGGAATTGACAAC
GATTAGACGAAGGATAACTACACCCGAAAAGAGGACACGGACGTCGTTGC
ACTCGGAGTAGCAGCCAGATGGCAGAGGACGCGGACGAAGAGGACGAGGA
CGAGAGTTGAATTGTATGAATTGCATCAAGAGAAAGATATGAAAAAGACA
CAGACTACGATG
back to top

protein sequence of NO04G04440.1

>NO04G04440.1-protein ID=NO04G04440.1-protein|Name=NO04G04440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MHHQREGRGGQMIHCMPNLPPHCPSVHLLKQNMAIGRPYVMLVLVTLFLA
TLSTVRADACPTPEYTVKPSGRGRRVWADKVTRIRLTIKNTSPFALDNYV
IRMGVPTDHVTYQSYNVLGHTARRKAITNFLTKPDGSLEWTLFDMPAGKD
FRFLIFVKIRDCASLGAISFPISSFYNRVNDTCPFDGPAAKMRIVMPKKT
KGNRRPPMPTGCPTPAPTIAPSAAPSLAPI*
back to top
Synonyms
Publications