NO04G04340, NO04G04340 (gene) Nannochloropsis oceanica

Overview
NameNO04G04340
Unique NameNO04G04340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5096
Alignment locationchr4:1172520..1177615 -

Link to JBrowse

Properties
Property NameValue
DescriptionPsbB mRNA maturation factor
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1172520..1177615 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR003107HAT
IPR019734TPR_repeat
Homology
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: PNT16522.1 (hypothetical protein POPTR_010G145000v3 [Populus trichocarpa])

HSP 1 Score: 85.5 bits (210), Expect = 9.700e-13
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 0 
Query:  358 RAPYREPKR---------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRH 476
            + P  EP+R          KPL   LDL  Y AK   ++    EA  I ++C+     DG+ Y+ L RI G++  T AARA+YE+G +   GEN +V Q + V E K G++R+A ELFDAA     RH
Sbjct:  133 KMPIFEPERVGSSGSGPQEKPLVVNLDLALYKAKVLARRFKYKEAEEILQKCISYWPEDGKPYVALGRILGKQSKTEAARAVYEKGCQATQGENPYVWQCWAVLENKMGNIRRARELFDAATVADKRH 260
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_021668709.1 (protein high chlorophyll fluorescent 107 [Hevea brasiliensis])

HSP 1 Score: 84.0 bits (206), Expect = 2.800e-12
Identity = 55/147 (37.41%), Postives = 77/147 (52.38%), Query Frame = 0 
Query:  342 SKALSERMLEEKFDNVRAPYREPKR--------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLK-WCGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASW 480
            S A+ +  LEE     + P  EP+R         KPL   LDL  Y AK   +    PEA  I ++C+     DGR Y+ L +I  ++     ARA+YE+G +   GE   V+Q + V E K G++R+A ELFDAA     RH+A+W
Sbjct:  125 SSAIIDAGLEEFAK--KMPIFEPERVEVVGSSQDKPLTVNLDLALYKAKVLARNYRYPEAQEILEKCISYWPEDGRPYVALGKILNKQSKIADARAVYEKGCQATLGELVCVVQCWAVLENKMGNIRRARELFDAATVADKRHTAAW 269
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_023735118.1 (protein high chlorophyll fluorescent 107 [Lactuca sativa] >PLY72794.1 hypothetical protein LSAT_6X18120 [Lactuca sativa])

HSP 1 Score: 84.0 bits (206), Expect = 2.800e-12
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 0 
Query:  357 VRAPYREPKR-------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAA 469
            ++ P  EPKR        KPL   LDL  Y AK   +     EA  + ++C+ +   DGR+Y+ L +I G++  +T AR +YE+G +   GEN+++ Q + V E K G++RKA +LFDAA
Sbjct:  138 MKMPIFEPKRVGSSSSGDKPLGVNLDLALYRAKVLARNFRYKEAEEVLQKCISIWPEDGRSYVALGKILGKQSKSTEARTVYEKGCQATQGENAYIWQCWAVLENKMGNIRKARQLFDAA 257
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_011010405.1 (PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic [Populus euphratica])

HSP 1 Score: 83.6 bits (205), Expect = 3.700e-12
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 0 
Query:  358 RAPYREPKR---------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRH 476
            + P  EP+R          KPL   LDL  Y AK   ++    EA  I ++C+     DG+ Y+ L +I G++  T AARA+Y++G +   GEN ++ Q + V E K G++R+A ELFDAA     RH
Sbjct:  133 KMPIFEPERVGSSGSGPQEKPLDVNLDLALYKAKVLARRFKYKEAEEILRKCISYWPEDGKPYVALGKILGKQSKTEAARAVYDKGCQATQGENPYIWQCWAVLENKMGNIRRARELFDAATVADKRH 260
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_002519222.1 (PREDICTED: protein high chlorophyll fluorescent 107 isoform X1 [Ricinus communis] >EEF43086.1 pre-mRNA splicing factor, putative [Ricinus communis])

HSP 1 Score: 82.8 bits (203), Expect = 6.300e-12
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 0 
Query:  352 EKFDNVRAPYREPKR---------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRH 476
            EKF   + P  EP+R          KPL   LDL  Y AK   +     EA  I ++C+     DGRAY+ L +I  ++  T  ARA+YE+G +   GEN+++ Q + V E K G++R+A ELFDAA     RH
Sbjct:  126 EKFAK-KMPIFEPERMELGSSSSQEKPLAVNLDLALYKAKVLARGYRFAEAEVILQKCINYWSEDGRAYVALGKILTKQSKTAEARAVYEKGCQATQGENAYIWQCWAVLENKMGNIRRARELFDAATVADKRH 258
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_015574668.1 (PREDICTED: protein high chlorophyll fluorescent 107 isoform X2 [Ricinus communis])

HSP 1 Score: 82.8 bits (203), Expect = 6.300e-12
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 0 
Query:  352 EKFDNVRAPYREPKR---------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRH 476
            EKF   + P  EP+R          KPL   LDL  Y AK   +     EA  I ++C+     DGRAY+ L +I  ++  T  ARA+YE+G +   GEN+++ Q + V E K G++R+A ELFDAA     RH
Sbjct:  126 EKFAK-KMPIFEPERMELGSSSSQEKPLAVNLDLALYKAKVLARGYRFAEAEVILQKCINYWSEDGRAYVALGKILTKQSKTAEARAVYEKGCQATQGENAYIWQCWAVLENKMGNIRRARELFDAATVADKRH 258
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_017646690.1 (PREDICTED: protein high chlorophyll fluorescent 107 [Gossypium arboreum])

HSP 1 Score: 82.8 bits (203), Expect = 6.300e-12
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 0 
Query:  358 RAPYREPKR-------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSA 478
            + P  EP+R        KPL   LDL  Y A+   +K    EA +I ++C+     DGR+Y+ L +I  ++   T ARA+YE G +   GEN ++ Q + V E K G++R+A ELFDAA     RH A
Sbjct:  126 KMPLFEPERGESGGTLEKPLAVNLDLSLYKARVLARKYRYEEAEKILEKCIYYWPEDGRSYVTLGKILSKQAKRTEARAVYERGCQATQGENPYIWQCWAVLENKMGNIRRARELFDAATVADKRHIA 253
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_016572358.1 (PREDICTED: protein high chlorophyll fluorescent 107 [Capsicum annuum] >XP_016572359.1 PREDICTED: protein high chlorophyll fluorescent 107 [Capsicum annuum])

HSP 1 Score: 82.4 bits (202), Expect = 8.200e-12
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 0 
Query:  322 EDLEAKMTAAEASSSSLDFLSKALSERMLEEKFDNVRAPYREPKR------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRH 476
            ED + +    E   SSL F   A  ++  +      + P  EP+R       KPL   LDL  Y AK   +K    +A +I ++C+++   DGR+Y+ L +I  ++     ARA+YE+G +   GEN ++ Q + + E + G+LR+A ELFDAA     +H
Sbjct:  125 EDSQERNDLQEGQPSSLSFPLDAGLKKFAK------KVPIFEPRRLESGSAEKPLKVNLDLALYKAKILARKFQYADAEKILEQCIDVWPEDGRSYVALGKILSKQSKLNEARAVYEKGCQATQGENPYIWQCWAILENRMGNLRRARELFDAATVADKKH 279
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: POE81027.1 (protein high chlorophyll fluorescent 107 [Quercus suber])

HSP 1 Score: 82.4 bits (202), Expect = 8.200e-12
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 0 
Query:  368 KPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSA 478
            KPL   LDL  Y AK   +     EA  + ++C+     DGRAY+ L +I G++     ARA+YE+G +   GEN ++ Q + V E K G++R+A ELFDAA     RH A
Sbjct:   19 KPLTVNLDLALYRAKVLSRNFRYQEAEEMLQKCIYYWPEDGRAYVALGKILGKQLKAAEARAVYEKGCQATQGENPYIWQCWAVLENKMGNIRRARELFDAATVANKRHIA 129
[Close]
BLAST of NO04G04340 vs. NCBI_GenBank
Match: PPS00591.1 (hypothetical protein GOBAR_AA20073 [Gossypium barbadense])

HSP 1 Score: 82.4 bits (202), Expect = 8.200e-12
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 0 
Query:  358 RAPYREPKR-------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSA 478
            + P  EP+R        KPL   LDL  Y A+   +K    EA +I ++C+     DGR+Y+ L +I  ++   T ARA+YE G +   GEN ++ Q + V E K G++R+A ELFDAA     RH A
Sbjct:   39 KMPLFEPERGESGGTLEKPLAVNLDLSLYKARVLARKYRYEEAEKILEKCIYYWPEDGRSYVTLGKILSKQAKRTEARAVYETGCQATQGENPYIWQCWAVLENKMGNIRRARELFDAATVADKRHIA 166
The following BLAST results are available for this feature:
BLAST of NO04G04340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PNT16522.19.700e-1339.84hypothetical protein POPTR_010G145000v3 [Populus t... [more]
XP_021668709.12.800e-1237.41protein high chlorophyll fluorescent 107 [Hevea br... [more]
XP_023735118.12.800e-1238.33protein high chlorophyll fluorescent 107 [Lactuca ... [more]
XP_011010405.13.700e-1237.50PREDICTED: psbB mRNA maturation factor Mbb1, chlor... [more]
XP_002519222.16.300e-1238.81PREDICTED: protein high chlorophyll fluorescent 10... [more]
XP_015574668.16.300e-1238.81PREDICTED: protein high chlorophyll fluorescent 10... [more]
XP_017646690.16.300e-1238.28PREDICTED: protein high chlorophyll fluorescent 10... [more]
XP_016572358.18.200e-1232.92PREDICTED: protein high chlorophyll fluorescent 10... [more]
POE81027.18.200e-1240.54protein high chlorophyll fluorescent 107 [Quercus ... [more]
PPS00591.18.200e-1238.28hypothetical protein GOBAR_AA20073 [Gossypium barb... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009355NSK009355Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04340.1NO04G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668891gene_2221Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Mbb1gene1781Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04340.1NO04G04340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04340 ID=NO04G04340|Name=NO04G04340|organism=Nannochloropsis oceanica|type=gene|length=5096bp
GAACGGCTCGTGCCATGGCGCTGTGTATTGCATGTTTGGTGTAGGTTTGG
GAAAGAGAGGGGGAAGATGGATGAGCGAGAGGTGCAACAAGGCACGGAAG
ATAGCAATGGAGTGGGGGTGTGTGGCTGAGAGCCAATCTGATCTATTGTC
ATGAGGCCATCGTACATCCCTCCCCGCCACACTATGCAATACGGGCACTA
CAAGGTCTTGACGTGGAAGTTGCTATAATGTGCGAGGAGGGCTTTATCTT
CTAGTTGCCGTGCCCTAGGCGTGGGCGTGGTTGGCGTGTGGGCAAGAGCC
TCAGCCGCTATTGGACTTTGTGCGAAATCACATGATACTCACCGAGCGTG
CCCTCGGCCTCTCTCTAATGCGCCATGCGCTACATAAACCTCGCCACCTC
ACGAACCTTCATACAGTATAGGCATCACCTTCTCGAGTGTCTACGCTGTG
CGACATTCAAGCTTTTTGGGGTCTTTGATTTTCACTTATCCGAACGATAT
CGATCCGGAGAGCCTCCCCGCTACGACTCAGTCGATTTGCTGCCTTCTCC
CTTAATTGACTTGCACCTGTCCCTGGCCTCTGCCGACTGGCTTTCCTTTC
ATTCTCTCACTTCCGAGCCACATTTCACACAGGCAGGGAGATGGCAGTGT
CAAGGAGAAGACGGAGACCAGGTTCCCCTCTCTCTGTCACGAAGGCCGCT
GTCGTCGTCCTCCTAAACGCGACCTTATCAGCAACAGCATCATCATCATC
ACCACATTCTTCCTCTTTCCAACCACCACTGgtacgtcttatgtgtccaa
tcccatctcctctctctcttcgtgggtatcggaaggatggaatgggacag
tggtgtccctatccccgcaagtaattttctaatcacccttttttcctttc
cgatccgcacacagCACGGCGGGGCTTTCATCCCCCCAGGCGCTGGCGCT
GCCTATTCCCGATGGTGGCAAAGGACGATCACCACCACCAGTAGCAGTAG
CGGCAGCAGCTGTGGCGTCAGTAGCAGCAGCAGCAGCGATAGAATAACAA
AGGGAAGACGGGACGAGGACAGCATTTTAGGAAGCGCAGCATCACACTGT
AATATAATTCCTTCCTTGTTCCCTTCCTGCTCCTCCACCTCGACCCTCCT
ACTCGCCACAGCCAAGACACGCACGGACCCTTCAGCGGCACAGTTTTCTG
CCCCCTCCTCATCCTCGTCTGCTCCCCCTCCCCTCATTTCTACCACCATC
ACGGCCAGCAGCAGCACCACTGCGTCAAAACCCAGCACCAAAAGCAGGAG
CAGCAGCAGCGGCGGCGGTAGCAGCAGCAAACCTGGCTTGCTCTACGTGT
TGCAAGGTGTTCATGATAGGGAGACAATACGGAGCAGCAGCGAGGAGGAA
GCTGATCGTGCAGTGGCAGCAGTGGGACTTAAGGGGAGAAGCAATGCCCC
TCTTTCGTCTTTGGATAAGGCCAAGGCATGCATGCCGAGGTTGAAGAAAG
CGACGGGGGAGGGAAGAAAGAAGGGAGAGAAGAGCATGAAAGAGATGGCA
GATGAAGTCGAAGCACGACTCGCCGGAGACTACGAGGAGGAGGAGGAGGA
GGAGGATGAGGATGCCTTTTCCACCAGAAGAGCTGCCGCCGCAGCAGCTT
CCACGGAGGAGGAGGAGGACGAGGACGAGGAGGAAGGTTCCAAAGAGGAA
CCCGGGCCTCCGTTGCCTTACCTCCCGACGCACGCCGAAGACCTGGAAGC
GAAGATGACGGCAGCGGAGGCGTCTTCCTCCTCCCTGGATTTCCTGTCCA
AAGCCTTGTCGGAGCGCATGCTGGAGGAAAAATTTGACAATGTCCGCGCT
CCCTACCGAGAGCCGAAACGGCCGAAACCGCTCCCTTATCAGTTAGATTT
ACTCTCGTACTATGCGAAGGAAGCGTTGAAGAAGAGGAACATCCCAGAGG
CCGTGAGGATCTATAAGAGATGCGTGGAGCTGGACCGGTACGACGGGAGG
GCTTACATCGGCCTGGCGCGGATAGAGGGGCGGCGGAGAAACACCACGGC
GGCGAGGGCGATATACGAAGAGGGCCTCAAGTGGTGTGGGGAGAACTCGT
TTGTGTTGCAGGCGTATGGCGTGTTTGAGCAGAAGAACGGGgtacgtgcc
aagcttccctccctccctccctccctccctccctccgtcccgccgtccct
ccctccctccgttcctccctccctttcccccgaaacacaggaaacacaga
actcatcccgtcctctctccttttctccctccctcctccctcttttcctc
ccccctcctttcttccttgcccatcaacacagGATCTACGCAAGGCGATG
GAGCTCTTCGATGCTGCCATCAAGCAGGGCCCTCGGCATTCGGCGTCCTG
GCTGGCCAAAGCCCAATTACTGTGGGAATTGGGTCGGAAACGAGAGGCCC
GCGAATGCTTCCAAACCGCCGTGCAGAGCAACACGGACAACGAGGTGCTA
TGGCACGCGTGGGGAGTGGCCGAGAAGCGGGATGGAAATTTCGGCGTGGC
CCGGAAACTGCTTCGGAAGGCGACTGAGATCAACCCCAGgcaagcgaagg
cccatcggttcgaaacgaattcacgtcgttctcgacctagattttctctc
ccctctcccttgtgtcgctctctgtcctctgatcgatctccccgcgcctc
acttcccccccctccctccttccttgtagAAACTCGTTCTGCTGGCATGC
TTGGGCCGTGATGGAACAAGAGCTTCGCAATCAGGACCTGGCCGTCGACC
TCTATCAAAACGCCTTGAAAgtgagaaagagagggagggagggagcgagg
gagggagggagcgggcaggtccaaattgggagtagtgttatcgtgagacg
tacggtcacactcaactcttctcctaccctcctccctccttccctccctt
cctctttcagGCCTTTCCCAACAGCAGCCACACCTATCAAGCGTGGGCCT
GTCTCGAGAAAGAGCGAGGGAACTGGGATTTAGCGTTTTCTCTCTTCCGC
TCGGGCATCGAGAAACGGCCGTGGGATGGCGGGGCGTACCAGCCGTATGC
CCTGGCGCTGAAGGAGAGGGGGGAGATGGCTAGTGCGATGGAGGTGTTTC
AGAAGGGTCTGCTGGAGGATCCGTACCACTGCCCGCTTTACCAGgtgcgt
gcttatatcctcattttcttaatttggttcgtgaagcatttataaacaat
aattataatttttattcttgttgtttttttgttttttgggggctttttct
aattccgttcccatcccttgcgcgattcattttctcctttcctcatcacg
ctgcctaacacatcatccctcccctcccccccttccttcctcccttcctc
cctctccaacagGCCTTCGGCATGCTTCTCGCGGAGTTGGGGAGGGTAGA
TGCGGCAAGAGTCATCTTCGAGCGCGGCACCACCACCAACCCCCGGGGTC
GACATGTTTACTACATCTGGCATGCCTGGGCTGTTATGGAAGAGAAGAAC
Ggtaagccctccctccctcccttcctccctccctccctccctttcttcct
ccctccctccctccctccctccctccctcgcttcccccctcattttccgc
cgttacgcacattttgtcccatttcacttcatctcctcccacgcgtgtgt
cataaatacacaaggttacttcttcgacctcccttctttcccttttttca
tatttttctccctttctccttttccctttggaaatcaaacacacgctgcg
aggagaaacgaaacatccaacaactccctcctcccttctcccccccccct
tcctccctccctccctccctccctgccccagGTAATTTCGAGCTCGCCCG
CCGCTACTTTCGCAAGGCCCTCGAGTGCCAATCCCGCTCCATCCCTACCC
TGATCGCCCTGGCGCAGCTGGAGGAGATGGACGGGAACGTGGGTGGATGT
CGTGAGCTTTATGAGCGGGTCTTGCTGATTAGGCCTCAGGCGGAGGTGTA
TTGGACGCAGTATGAAGAGATGGAGAGGAGGTTAGGACATGTGGATCATG
CACGCAGGATCGATCAAAGAAGGAATCTGGCTTTTGGGGGGTTTGGGGGA
GGACTAGGAGGAAGGGGAGGGGGAGGAAGGGGGGAGGGAGGGGAAGAGGA
GGGGGgtgaggggggggctacgggagagggagtcggatgaaggggctctt
tgactctttccaagGATCGTATGCTCTGCCGAGGAGAACGATGGAGGAGG
AGGAGGGTAGGGGAGGGGGCAGGGAAGGAGGAGAGGTGGAAAGAGGGGGG
AGAGAGGGGGGCAGCAGTAGTACCAGTATGAGTAGTAGTAGTAGTAGCAG
CAGCAGTAGCTGGAGAAGTGGTGGAGAGGGGGAAAGAGGGGGTGGTGGAG
GAGGTGGGGAGTCATCACAGCAACAGAAGCAACAGCAACAATTGCAGCAA
CAGCAACAGCAGCAAAGGGGGAGAATAGGAGGGAATCCAGGAGGATCTTC
TCCGTCGCTGCCGTTGAGGCAGCAGCAGAAGGACGACTTGTCTGCGTTTG
ATACCTTCTTGGAGGGGGGAGGAGCGGGGGGAGGGATGGGGTTAGGAAGG
GGGGAAGGACCGCAGAGGCGGAATGTGACACTGGGAATTGCATAAAGAGC
ATTGAGGAGGAAGACAAGGAGAAGAAGAGAAAGACAGGCGTTGTGCAGAT
AAATTTAAGCGATTGGCGAGACATTCCTGAGATAGATTGAGCGTGCCGGT
GCACGAGCAATTATGGGAGAGGATGGTTGCCGGGAAGAAAAGACGGTAAA
ACACATTTAGAAGAAGAGGAGGTCGAAGAGATGAAGGAAGAACAAGCAGA
GAAGTGGAGAAGCAGAGGAGAGGTTAGGGTTAGGGAGGGAGAAGGAGACG
ATGCAGTTGAAGAAGTGAGGAAGGAGAGGAAGAAGAGGCAGAATGAAAGA
AAGAAATAGGAAAGAAGACAGAGGAGGAACGAAAAGAATTCACTGGTAAA
AATGGGGGAGGAAACAGTGAAGAGGAATACAAGGCCATGTGAAATG
back to top

protein sequence of NO04G04340.1

>NO04G04340.1-protein ID=NO04G04340.1-protein|Name=NO04G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=948bp
MAVSRRRRRPGSPLSVTKAAVVVLLNATLSATASSSSPHSSSFQPPLHGG
AFIPPGAGAAYSRWWQRTITTTSSSSGSSCGVSSSSSSDRITKGRRDEDS
ILGSAASHCNIIPSLFPSCSSTSTLLLATAKTRTDPSAAQFSAPSSSSSA
PPPLISTTITASSSTTASKPSTKSRSSSSGGGSSSKPGLLYVLQGVHDRE
TIRSSSEEEADRAVAAVGLKGRSNAPLSSLDKAKACMPRLKKATGEGRKK
GEKSMKEMADEVEARLAGDYEEEEEEEDEDAFSTRRAAAAAASTEEEEDE
DEEEGSKEEPGPPLPYLPTHAEDLEAKMTAAEASSSSLDFLSKALSERML
EEKFDNVRAPYREPKRPKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRC
VELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWCGENSFVLQAYGV
FEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQLLWELGRKREARECFQ
TAVQSNTDNEVLWHAWGVAEKRDGNFGVARKLLRKATEINPRNSFCWHAW
AVMEQELRNQDLAVDLYQNALKAFPNSSHTYQAWACLEKERGNWDLAFSL
FRSGIEKRPWDGGAYQPYALALKERGEMASAMEVFQKGLLEDPYHCPLYQ
AFGMLLAELGRVDAARVIFERGTTTNPRGRHVYYIWHAWAVMEEKNGNFE
LARRYFRKALECQSRSIPTLIALAQLEEMDGNVGGCRELYERVLLIRPQA
EVYWTQYEEMERRLGHVDHARRIDQRRNLAFGGFGGGLGGRGGGGRGEGG
EEEGGSYALPRRTMEEEEGRGGGREGGEVERGGREGGSSSTSMSSSSSSS
SSSWRSGGEGERGGGGGGGESSQQQKQQQQLQQQQQQQRGRIGGNPGGSS
PSLPLRQQQKDDLSAFDTFLEGGGAGGGMGLGRGEGPQRRNVTLGIA*
back to top
Synonyms
Publications