NO04G04150, NO04G04150 (gene) Nannochloropsis oceanica

Overview
NameNO04G04150
Unique NameNO04G04150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2373
Alignment locationchr4:1131896..1134268 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1131896..1134268 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO04G04150 vs. NCBI_GenBank
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 8.400e-32
Identity = 91/268 (33.96%), Postives = 141/268 (52.61%), Query Frame = 0
Query:   26 KKTGLFQRLTQALQS------DGSNAQEELNAAVSGLTDTGLPDAPFLQ---------DTWAQDDDGLSLIKPAFDGDVLSVFRTLTENYKDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQ---KEGPLTSADGLSALSAFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVEATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKLILTDDKIAQKFMDDPSAAYREAQAL 276
            KKTGLFQR+++AL +      DG+   +E+  A     D G P  P L          D W + DDGL +++ + DGD+ +  R L    KD L   W  P V +AL+T  P+F   K +  I +   ++   +  DG+ A   F  ++  +  VL+ + DP KFAAK+Q Y   KD  L DL A+  +G+ E    +    + +ELGD+IDL+  G  G+EP+ +   RN +K+  P +Y  ++TD  + +K+M+DP  A  E + L
Sbjct:   47 KKTGLFQRISRALDTGSAMDDDGTPFTDEMWEAT---RDEGEPVDPALMDFKNPVERTDAW-KFDDGLKMLQTSMDGDLTNPVRDLVNGAKD-LHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNM-KKYMEDPFKAVEEGKEL 308          
BLAST of NO04G04150 vs. NCBI_GenBank
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526] >EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 111.7 bits (278), Expect = 3.900e-21
Identity = 81/280 (28.93%), Postives = 134/280 (47.86%), Query Frame = 0
Query:   14 LLAFVVGPATA------NKKTGLFQRLTQALQSDGSNAQEELNAAVSGLTDTGLPDAPFLQDTWAQDDDGLSLIKPAFDGDVLSVFRTLTENYKDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQKEGPL-TSADGLSALSAFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPV-----------------LKDLVARTEKGDVEATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKLILTDDKIAQKFMDDPSAAY 270
            ++A ++G  TA       KK G  QR+ + + +D + A           T T   +   +QD+W+  D  LS  +   +GD   +   ++     ++QEI+  PEV+  LL  FPMF  + G+  ++ K   L T AD LS L ++ ++++   + ++++ DP   A  MQ Y     PV                 + +LV R E+GD EAT  L   I +   G+ IDL  F  +G EP A+  LR ++   EP ++ LI  +D + +K + DPS  +
Sbjct:    5 VIALLIGAVTACHAAESEKKGGPMQRVKRMMATDATAA-----------TSTSAGEEEDIQDSWS-FDSVLSGARRLINGDHAGILADMSMG--KEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEF--KGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268          
BLAST of NO04G04150 vs. NCBI_GenBank
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.2 bits (274), Expect = 1.100e-20
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 0
Query:  102 DQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQKEGPLTSADGLSALSAFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVEATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKLILTDDKIAQKFMDDPSAAYREAQALS 277
            D+L+  W  P V + L    P     K +  +  KE  LT  DG+ A+  F + +      +E V DP   A  M  Y +L+DP    L+AR + G+ EA L LQQ I++RELG +IDL   G  G EP+ +   R  ++  EP L+  I ++D IA+K+M+ P    ++   L+
Sbjct:    9 DELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEA-LTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAPETVLKDVMDLT 182          
BLAST of NO04G04150 vs. NCBI_GenBank
Match: EWM20107.1 (hypothetical protein Naga_101770g1 [Nannochloropsis gaditana])

HSP 1 Score: 79.7 bits (195), Expect = 1.600e-11
Identity = 39/107 (36.45%), Postives = 68/107 (63.55%), Query Frame = 0
Query:  176 MQTYQSLKDPVLKDLVARTEKGDVEATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKLILTDDKIAQKFMDDPSAAYREAQALSPSLAEA 283
            M  Y +  D   + L+ R EKGD  A+L +QQ ++N+E+GD+IDLEAFG  G+ P  +S   + +++ EP ++  +L+ D +A+++++DP  A +EA  ++    EA
Sbjct:    1 MYNYATSTDSKWRSLLERVEKGDKTASLDMQQFLLNKEIGDLIDLEAFGFGGVLPDVLSKAISSVREQEPLIWNSVLS-DPVAKRYLEDPMLAVKEALDVAKDYGEA 106          
BLAST of NO04G04150 vs. NCBI_GenBank
Match: EWM25317.1 (hypothetical protein Naga_100281g8 [Nannochloropsis gaditana])

HSP 1 Score: 68.9 bits (167), Expect = 2.900e-8
Identity = 50/183 (27.32%), Postives = 89/183 (48.63%), Query Frame = 0
Query:   14 LLAFVVGPATA------NKKTGLFQRLTQALQSDGSNAQEELNAAVSGLTDTGLPDAPFLQDTWAQDDDGLSLIKPAFDGDVLSVFRTLTENYKDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQKEGPL-TSADGLSALSAFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKD 190
            ++A ++G  TA       KK G  QR+ + + +D + A           T T   +   +QD+W+  D  LS  +   +GD   +   ++     ++QEI+  PEV+  LL  FPMF  + G+  ++ K   L T AD LS L ++ ++++   + ++++ DP   A  MQ Y     PV ++
Sbjct:    5 VIALLIGAVTACHAAESEKKGGPMQRVKRMMATDATAA-----------TATSAGEEEDIQDSWS-FDSVLSGARRLINGDHAGILADMSMG--KEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQN 173          
The following BLAST results are available for this feature:
BLAST of NO04G04150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24065.18.400e-3233.96hypothetical protein Naga_100063g14 [Nannochlorops... [more]
XP_005854419.13.900e-2128.93hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
XP_005854650.11.100e-2034.29hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
EWM20107.11.600e-1136.45hypothetical protein Naga_101770g1 [Nannochloropsi... [more]
EWM25317.12.900e-827.32hypothetical protein Naga_100281g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04150.1NO04G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579449gene_2198Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04150.1NO04G04150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04150 ID=NO04G04150|Name=NO04G04150|organism=Nannochloropsis oceanica|type=gene|length=2373bp
GCAGAAGGGCTTATTCTTTCTGCCGTCCATAAAATGCTTGGCCTCGAGGA
GGGGTTTAAATCTGAAGCAGTCCTCTCAGAGGGACGGACTCCTGGTGGAC
CTTTAAATCATGGCGCCATGCCTGGTAGCTACTAGCTACCAGCTACCAGT
AGGCGCTCACACACCTGTTACCCACATTTAGCGTGCAAGCCACGCTACAA
TTGTCTACGTGCTCGTATTCTTATCGCTTTACCACTTATCGCTTTACCAC
TATTCGTCACATGTTCGCTCTGGCGATGACCCCCCAACTTGTTGAACAGG
ACAACGAGCACATGAGACGACTTTCGATCAATTGATCCCACCCTTACTAC
AAACAGCGTGCCCTTACTCAATTTTACCCACCATTATCCTCAATGCCCAG
ATTCAAAGCAACCAAGGATGCGGTCGCCTGTTTCCCACCGTATGGTACTC
TGTTGCCTGCTCGCCTTTGTAGTCGGCCCGGCTACGGCCAACAAGAAGAC
GGGCCTCTTTCAGCGCTTGACCCAGGCCCTGCAAAGCGACGGCAGCAATG
CGCAAGAGGAACTGAATGCGGCAGTGTCGGGCCTCACCGATACGGGTTTA
CCTGACGCGCCCTTCCTGCAAGACACCTGGGCGCAAGATGATGACGGCCT
CTCGCTTATCAAACCTGCCTTTGATGGTGACGTTCTATCCGTCTTCCGTA
CCTTGACCGAGAATTACAAGGACCAATTACAAGAAATCTGGGGCCAGCCA
GAGGTGGCCAAGGCGTTGTTGACCAACTTCCCCATGTTTAGTGGTATTAA
GGGCATGGCAAGCATTGCACAGAAGGAAGGGCCTTTGACGTCTGCGGACg
tacgtcgggagggaaggatggagagatgtggattaagagatgagataggg
agttggaatggagatatatgaaggcattatgccatgtgctaaatgtgtca
tcatatacctccctttgcatcgagtaatgacctcagtacctcttttcctc
ccatctctgccagctcacttcccattttctgccctcctttcttcccatcc
aaaaagGGTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCCAC
TGCCCGCGTCTTGGAAGAGGTCATGGACCCCGGCAAATTCGCGGCAAAAA
TGCAAACGTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGGCA
CGGACCGAGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAGAT
TGTGAATAGGGAGCTGGGCGACAgtacgtgtctagaataaagggagggtg
ggagggaaaaagggaaggcggttaggagggtgagatggaggaagggtcct
tatcagtgcgcttgccgtcgtgtcttgagccagagcccttcttcagcttt
gctgtctgcttgtttaagatacctggcccctattccgtctctcacccact
cttcatctcgcctgacccatacagTTATTGATCTCGAAGCCTTTGGCATC
CGCGGTTTGGAACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAAGA
CACGGAGCCAGCTTTGTACAAACTGATACTCACCGACGACAAGATCGCGC
AGAAATTCATGGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCCTC
AGTCCATCTTTGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACCAG
GAGATAGTTTGTGGCTGTCAGTGGGAAAGGTACATGTACATCCGTTCAGG
GGCAGTGTCAGTGTTTTTTTTTTAAATCACGTCAAGGAGTATGCCCCCTG
CCCTTCAGAAGAAAAAAAGCCTCCGCATCTGGCGATCTGACCAGCGTAGG
AAAAGTACAGGACCTACTCACTTGCCAACCCCACGAGGTCGCCACCTCAA
GCGCTGCTTCTTCCTGGAATTGCTTCTAGATGCCCGTACGCATTTCCGCA
GCCACCTTACATGGCTGGTGTGCATAGTCTAAATAAATAGGGTCGACAAT
TGAGAGGGTGAGGAATTGGAGGAGGACGGTTGGGAGAGACGTAGCAGGCA
AAGGGGCTATCCCCGAGGTTCAAAGCTGCCGTCTGCCGCTCATATCCTTT
GGCAAGGTTCGAAAGTGTGGATCACGGAGATGTAGAAGTTACAGAACACC
CTCAAAAGCTTAGCGTGCCCCGGGATAGTGCCAAAGAGTGGGAAGATGAG
GAGGGCAAGCAGCTCATCGAATTGCTCACCTCATCCTACTTGGGCCTAAT
GCCCACAGATAGTTTTGCCATTTCACGATGAATAAATTATTCTGTCACAT
TGCTACCGTACCCGGAGAAGGCGCCATAAAGCAAAAATATCAAACTAAAC
TAGATACACAAACATGCCATCAT
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protein sequence of NO04G04150.1

>NO04G04150.1-protein ID=NO04G04150.1-protein|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRSPVSHRMVLCCLLAFVVGPATANKKTGLFQRLTQALQSDGSNAQEELN
AAVSGLTDTGLPDAPFLQDTWAQDDDGLSLIKPAFDGDVLSVFRTLTENY
KDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQKEGPLTSADGLSALS
AFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVE
ATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKL
ILTDDKIAQKFMDDPSAAYREAQALSPSLAEAAKVLASGGTRR*
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Synonyms
Publications