NO04G04150.1, NO04G04150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04150.1
Unique NameNO04G04150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1965
Alignment locationchr4:1131896..1134268 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1131896..1134268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G04150.1 vs.
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 8.400e-32
Identity = 91/268 (33.96%), Postives = 141/268 (52.61%), Query Frame = 0 
Query:   26 KKTGLFQRLTQALQS------DGSNAQEELNAAVSGLTDTGLPDAPFLQD---------TWAQDDDGLSLIKPAFDGDVLSVFRTLTENYKDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQ---KEGPLTSADGLSALSAFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVEATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKLILTDDKIAQKFMDDPSAAYREAQAL 276
            KKTGLFQR+++AL +      DG+   +E+  A     D G P  P L D          W + DDGL +++ + DGD+ +  R L    KD L   W  P V +AL+T  P+F   K +  I +   ++   +  DG+ A   F  ++  +  VL+ + DP KFAAK+Q Y   KD  L DL A+  +G+ E    +    + +ELGD+IDL+  G  G+EP+ +   RN +K+  P +Y  ++TD  + +K+M+DP  A  E + L
Sbjct:   47 KKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATR---DEGEPVDPALMDFKNPVERTDAW-KFDDGLKMLQTSMDGDLTNPVRDLVNGAKD-LHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNM-KKYMEDPFKAVEEGKEL 308
The following BLAST results are available for this feature:
BLAST of NO04G04150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24065.18.400e-3233.96hypothetical protein Naga_100063g14 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04150NO04G04150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04150.1NO04G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04150.1.cds1NO04G04150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04150.1.cds2NO04G04150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04150.1.cds3NO04G04150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04150.1 ID=NO04G04150.1|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
GCAGAAGGGCTTATTCTTTCTGCCGTCCATAAAATGCTTGGCCTCGAGGA
GGGGTTTAAATCTGAAGCAGTCCTCTCAGAGGGACGGACTCCTGGTGGAC
CTTTAAATCATGGCGCCATGCCTGGTAGCTACTAGCTACCAGCTACCAGT
AGGCGCTCACACACCTGTTACCCACATTTAGCGTGCAAGCCACGCTACAA
TTGTCTACGTGCTCGTATTCTTATCGCTTTACCACTTATCGCTTTACCAC
TATTCGTCACATGTTCGCTCTGGCGATGACCCCCCAACTTGTTGAACAGG
ACAACGAGCACATGAGACGACTTTCGATCAATTGATCCCACCCTTACTAC
AAACAGCGTGCCCTTACTCAATTTTACCCACCATTATCCTCAATGCCCAG
ATTCAAAGCAACCAAGGATGCGGTCGCCTGTTTCCCACCGTATGGTACTC
TGTTGCCTGCTCGCCTTTGTAGTCGGCCCGGCTACGGCCAACAAGAAGAC
GGGCCTCTTTCAGCGCTTGACCCAGGCCCTGCAAAGCGACGGCAGCAATG
CGCAAGAGGAACTGAATGCGGCAGTGTCGGGCCTCACCGATACGGGTTTA
CCTGACGCGCCCTTCCTGCAAGACACCTGGGCGCAAGATGATGACGGCCT
CTCGCTTATCAAACCTGCCTTTGATGGTGACGTTCTATCCGTCTTCCGTA
CCTTGACCGAGAATTACAAGGACCAATTACAAGAAATCTGGGGCCAGCCA
GAGGTGGCCAAGGCGTTGTTGACCAACTTCCCCATGTTTAGTGGTATTAA
GGGCATGGCAAGCATTGCACAGAAGGAAGGGCCTTTGACGTCTGCGGACG
GTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCCACTGCCCGC
GTCTTGGAAGAGGTCATGGACCCCGGCAAATTCGCGGCAAAAATGCAAAC
GTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGGCACGGACCG
AGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAGATTGTGAAT
AGGGAGCTGGGCGACATTATTGATCTCGAAGCCTTTGGCATCCGCGGTTT
GGAACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAAGACACGGAGC
CAGCTTTGTACAAACTGATACTCACCGACGACAAGATCGCGCAGAAATTC
ATGGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCCTCAGTCCATC
TTTGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACCAGGAGATAGT
TTGTGGCTGTCAGTGGGAAAGGTACATGTACATCCGTTCAGGGGCAGTGT
CAGTGTTTTTTTTTTAAATCACGTCAAGGAGTATGCCCCCTGCCCTTCAG
AAGAAAAAAAGCCTCCGCATCTGGCGATCTGACCAGCGTAGGAAAAGTAC
AGGACCTACTCACTTGCCAACCCCACGAGGTCGCCACCTCAAGCGCTGCT
TCTTCCTGGAATTGCTTCTAGATGCCCGTACGCATTTCCGCAGCCACCTT
ACATGGCTGGTGTGCATAGTCTAAATAAATAGGGTCGACAATTGAGAGGG
TGAGGAATTGGAGGAGGACGGTTGGGAGAGACGTAGCAGGCAAAGGGGCT
ATCCCCGAGGTTCAAAGCTGCCGTCTGCCGCTCATATCCTTTGGCAAGGT
TCGAAAGTGTGGATCACGGAGATGTAGAAGTTACAGAACACCCTCAAAAG
CTTAGCGTGCCCCGGGATAGTGCCAAAGAGTGGGAAGATGAGGAGGGCAA
GCAGCTCATCGAATTGCTCACCTCATCCTACTTGGGCCTAATGCCCACAG
ATAGTTTTGCCATTTCACGATGAATAAATTATTCTGTCACATTGCTACCG
TACCCGGAGAAGGCGCCATAAAGCAAAAATATCAAACTAAACTAGATACA
CAAACATGCCATCAT
back to top

protein sequence of NO04G04150.1

>NO04G04150.1-protein ID=NO04G04150.1-protein|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRSPVSHRMVLCCLLAFVVGPATANKKTGLFQRLTQALQSDGSNAQEELN
AAVSGLTDTGLPDAPFLQDTWAQDDDGLSLIKPAFDGDVLSVFRTLTENY
KDQLQEIWGQPEVAKALLTNFPMFSGIKGMASIAQKEGPLTSADGLSALS
AFTDYLAATARVLEEVMDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVE
ATLALQQEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKL
ILTDDKIAQKFMDDPSAAYREAQALSPSLAEAAKVLASGGTRR*
back to top

mRNA from alignment at chr4:1131896..1134268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04150.1 ID=NO04G04150.1|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp|location=Sequence derived from alignment at chr4:1131896..1134268- (Nannochloropsis oceanica)
GCAGAAGGGCTTATTCTTTCTGCCGTCCATAAAATGCTTGGCCTCGAGGA
GGGGTTTAAATCTGAAGCAGTCCTCTCAGAGGGACGGACTCCTGGTGGAC
CTTTAAATCATGGCGCCATGCCTGGTAGCTACTAGCTACCAGCTACCAGT
AGGCGCTCACACACCTGTTACCCACATTTAGCGTGCAAGCCACGCTACAA
TTGTCTACGTGCTCGTATTCTTATCGCTTTACCACTTATCGCTTTACCAC
TATTCGTCACATGTTCGCTCTGGCGATGACCCCCCAACTTGTTGAACAGG
ACAACGAGCACATGAGACGACTTTCGATCAATTGATCCCACCCTTACTAC
AAACAGCGTGCCCTTACTCAATTTTACCCACCATTATCCTCAATGCCCAG
ATTCAAAGCAACCAAGGATGCGGTCGCCTGTTTCCCACCGTATGGTACTC
TGTTGCCTGCTCGCCTTTGTAGTCGGCCCGGCTACGGCCAACAAGAAGAC
GGGCCTCTTTCAGCGCTTGACCCAGGCCCTGCAAAGCGACGGCAGCAATG
CGCAAGAGGAACTGAATGCGGCAGTGTCGGGCCTCACCGATACGGGTTTA
CCTGACGCGCCCTTCCTGCAAGACACCTGGGCGCAAGATGATGACGGCCT
CTCGCTTATCAAACCTGCCTTTGATGGTGACGTTCTATCCGTCTTCCGTA
CCTTGACCGAGAATTACAAGGACCAATTACAAGAAATCTGGGGCCAGCCA
GAGGTGGCCAAGGCGTTGTTGACCAACTTCCCCATGTTTAGTGGTATTAA
GGGCATGGCAAGCATTGCACAGAAGGAAGGGCCTTTGACGTCTGCGGACG
TACGTCGGGAGGGAAGGATGGAGAGATGTGGATTAAGAGATGAGATAGGG
AGTTGGAATGGAGATATATGAAGGCATTATGCCATGTGCTAAATGTGTCA
TCATATACCTCCCTTTGCATCGAGTAATGACCTCAGTACCTCTTTTCCTC
CCATCTCTGCCAGCTCACTTCCCATTTTCTGCCCTCCTTTCTTCCCATCC
AAAAAGGGTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCCAC
TGCCCGCGTCTTGGAAGAGGTCATGGACCCCGGCAAATTCGCGGCAAAAA
TGCAAACGTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGGCA
CGGACCGAGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAGAT
TGTGAATAGGGAGCTGGGCGACAGTACGTGTCTAGAATAAAGGGAGGGTG
GGAGGGAAAAAGGGAAGGCGGTTAGGAGGGTGAGATGGAGGAAGGGTCCT
TATCAGTGCGCTTGCCGTCGTGTCTTGAGCCAGAGCCCTTCTTCAGCTTT
GCTGTCTGCTTGTTTAAGATACCTGGCCCCTATTCCGTCTCTCACCCACT
CTTCATCTCGCCTGACCCATACAGTTATTGATCTCGAAGCCTTTGGCATC
CGCGGTTTGGAACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAAGA
CACGGAGCCAGCTTTGTACAAACTGATACTCACCGACGACAAGATCGCGC
AGAAATTCATGGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCCTC
AGTCCATCTTTGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACCAG
GAGATAGTTTGTGGCTGTCAGTGGGAAAGGTACATGTACATCCGTTCAGG
GGCAGTGTCAGTGTTTTTTTTTTAAATCACGTCAAGGAGTATGCCCCCTG
CCCTTCAGAAGAAAAAAAGCCTCCGCATCTGGCGATCTGACCAGCGTAGG
AAAAGTACAGGACCTACTCACTTGCCAACCCCACGAGGTCGCCACCTCAA
GCGCTGCTTCTTCCTGGAATTGCTTCTAGATGCCCGTACGCATTTCCGCA
GCCACCTTACATGGCTGGTGTGCATAGTCTAAATAAATAGGGTCGACAAT
TGAGAGGGTGAGGAATTGGAGGAGGACGGTTGGGAGAGACGTAGCAGGCA
AAGGGGCTATCCCCGAGGTTCAAAGCTGCCGTCTGCCGCTCATATCCTTT
GGCAAGGTTCGAAAGTGTGGATCACGGAGATGTAGAAGTTACAGAACACC
CTCAAAAGCTTAGCGTGCCCCGGGATAGTGCCAAAGAGTGGGAAGATGAG
GAGGGCAAGCAGCTCATCGAATTGCTCACCTCATCCTACTTGGGCCTAAT
GCCCACAGATAGTTTTGCCATTTCACGATGAATAAATTATTCTGTCACAT
TGCTACCGTACCCGGAGAAGGCGCCATAAAGCAAAAATATCAAACTAAAC
TAGATACACAAACATGCCATCAT
back to top

Coding sequence (CDS) from alignment at chr4:1131896..1134268-

>NO04G04150.1 ID=NO04G04150.1|Name=NO04G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr4:1131896..1134268- (Nannochloropsis oceanica)
ATGCGGTCGCCTGTTTCCCACCGTATGGTACTCTGTTGCCTGCTCGCCTT
TGTAGTCGGCCCGGCTACGGCCAACAAGAAGACGGGCCTCTTTCAGCGCT
TGACCCAGGCCCTGCAAAGCGACGGCAGCAATGCGCAAGAGGAACTGAAT
GCGGCAGTGTCGGGCCTCACCGATACGGGTTTACCTGACGCGCCCTTCCT
GCAAGACACCTGGGCGCAAGATGATGACGGCCTCTCGCTTATCAAACCTG
CCTTTGATGGTGACGTTCTATCCGTCTTCCGTACCTTGACCGAGAATTAC
AAGGACCAATTACAAGAAATCTGGGGCCAGCCAGAGGTGGCCAAGGCGTT
GTTGACCAACTTCCCCATGTTTAGTGGTATTAAGGGCATGGCAAGCATTG
CACAGAAGGAAGGGCCTTTGACGTCTGCGGACGGTCTCTCGGCCCTGAGC
GCTTTCACAGACTACCTCGCCGCCACTGCCCGCGTCTTGGAAGAGGTCAT
GGACCCCGGCAAATTCGCGGCAAAAATGCAAACGTATCAATCACTGAAAG
ACCCCGTGCTGAAAGACTTGGTGGCACGGACCGAGAAGGGAGATGTGGAG
GCAACGCTGGCGTTGCAGCAAGAGATTGTGAATAGGGAGCTGGGCGACAT
TATTGATCTCGAAGCCTTTGGCATCCGCGGTTTGGAACCTGCCGCCGTCA
GTAGCCTCCGAAATATGATAAAAGACACGGAGCCAGCTTTGTACAAACTG
ATACTCACCGACGACAAGATCGCGCAGAAATTCATGGATGACCCCTCGGC
CGCATACCGCGAGGCGCAAGCCCTCAGTCCATCTTTGGCGGAAGCGGCGA
AGGTGCTTGCTTCGGGAGGCACCAGGAGATAG
back to top
Synonyms
Publications