NO04G04110, NO04G04110 (gene) Nannochloropsis oceanica

Overview
NameNO04G04110
Unique NameNO04G04110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1394
Alignment locationchr4:1118225..1119618 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1118225..1119618 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO04G04110 vs. NCBI_GenBank
Match: XP_005852403.1 (hypothetical protein NGA_0705100 [Nannochloropsis gaditana CCMP526] >EKU23430.1 hypothetical protein NGA_0705100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.0 bits (323), Expect = 3.600e-26
Identity = 99/232 (42.67%), Postives = 123/232 (53.02%), Query Frame = 0 
Query:   30 TEAGRNSKSVRRQAGQSRL----TRAAPGGAAAATAHLPFLVMPVKDSSLKPTFDNTAGNQTSSLHSAKNVVPNTKVLVPSTAGTESLLPYEGAEVVFHRRPPPGVETLTKAEFAELKDEEDDEPTTDFDGTSG-DAPYDGDDETTDGVMALSLLGLVCWISFSALLVACFVQTEKRREEMLRFWRAIDSNPDLRQAVEQAAGGGAFPKFSKHAGLYRFLRAIAVALIVTRG 257
            T A  ++ SVRR  G +RL      AA   A AA A LPFL  P K S L PT  +     T S  +AK  VP     +P         P+   +       P     +  A   +        PT    G  G +A  +  DET DG +ALSLLGL  WI+ SALLV  FVQ+EKRRE MLRFWRAID+NP+LR+AVE+ AGG   P++ +  GL+RF RA  VAL+VT G
Sbjct:   28 TCAHGDATSVRRLGG-TRLWWTSRTAASVAAEAAAAALPFLAAPAKTSFLLPTVAS-----TESARAAK-TVPVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYSAPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVG 252
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BLAST of NO04G04110 vs. NCBI_GenBank
Match: EWM28804.1 (hypothetical protein Naga_100002g143 [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 1.100e-25
Identity = 99/232 (42.67%), Postives = 125/232 (53.88%), Query Frame = 0 
Query:   30 TEAGRNSKSVRRQAGQS---RLTRAAPGGAAAATAHLPFLVMPVKDSSLKPTFDNTAGNQTSSLHSAKNVVPNTKVLVPSTAGTESLLPYEGAEVVFHRRPPPGVETLTKAEFAELKDEEDDE-PTTDFDGTSG-DAPYDGDDETTDGVMALSLLGLVCWISFSALLVACFVQTEKRREEMLRFWRAIDSNPDLRQAVEQAAGGGAFPKFSKHAGLYRFLRAIAVALIVTRG 257
            T A  ++ SVRR  G         AA   A AA A LPFL  P K S L+PT  +     T S  +AK  VP     +P         P+   +    + P PG      +E      +   + PT    G  G +A  +  DET DG +ALSLLGL  WI+ SALLV  FVQ+EKRRE MLRFWRAID+NP+LR+AVE+ AGG   P++ +  GL+RF RA  VAL+VT G
Sbjct:   28 TCAHGDATSVRRLGGTRPWWTSRTAASVAAEAAAAALPFLAAPAKMSFLQPTVAS-----TESARAAK-TVPVPPFRLPQKTWMPWPQPFSDMQTP-AKDPRPGQALEIYSEPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVG 252
The following BLAST results are available for this feature:
BLAST of NO04G04110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852403.13.600e-2642.67hypothetical protein NGA_0705100 [Nannochloropsis ... [more]
EWM28804.11.100e-2542.67hypothetical protein Naga_100002g143 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009375NSK009375Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04110.1NO04G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579432gene_2194Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g143gene1796Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04110.1NO04G04110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04110 ID=NO04G04110|Name=NO04G04110|organism=Nannochloropsis oceanica|type=gene|length=1394bp
ATGAGCCCTCCCCGTCGTCGTCCCCGCCTGCTCCTGGCTGTGGCCGTATT
CCTCTCCTTCTTTATTTTTTCTCTGCTGCCCATTATCACGGAAGCGGGAC
GAAACTCCAAGAGTGTCAGGCGTCAGGCAGGTCAATCGAGACTGACTCGA
GCAGCACCAGGAGGAGCAGCAGCAGCCACTGCACACTTGCCTTTCCTAGT
TATGCCGGTCAAAGATTCGAGTTTAAAACCCACATTTGACAACACAGCTG
GAAATCAAACATCTTCTTTGCATTCTGCCAAAAATGTTGTTCCAAACACG
AAAGTGTTGGTGCCCTCTACGGCTGGTACAGAAAGCCTCTTACCATACGA
AGGAGCCGAGGTCGTCTTCCATCGCCGTCCTCCTCCCGGCGTAGAAACTC
TCACGAAAGCTGAATTCGCAGAACTTAAAGACGAAGAAGATGACGAGCCC
ACCACTGACTTTGACGGGACAAGTGGTGACGCCCCCTACGACGGCGATGA
TGAAACAACCGACGGCGTCATGGCTCTCTCTCTCCTGGGACTGGTGTGCT
GGATATCTTTCTCCGCCCTCCTCGTCGCTTGCTTCGTCCAAACAGAAAAG
AGACGCGAAGAAATGCTCCGGTTCTGGCGCGCCATTGACTCGAACCCCGA
CTTGAGGCAGGCAGTTGAACAAGCAGCAGGAGGGGGGGCGTTCCCCAAGT
TTAGCAAGCATGCAGGCCTCTATCGCTTTTTGCGTGCGATTGCCGTGGCG
TTAATTGTAACGgtaggtttaaatctggtattttttatgggccagactcc
ggtaccgagCGCGGCGGGAGGGAAAGGCGATGGAGGGGGGAGGGAGAGGG
AGGAACTGGGGGACGAGGGAATATCTCGCCCTTGGATCCGACGGGAATGG
GCAACGAGGGCACGAGCGACAGCACCCCCGTCATGGGGATGGTGGTCCTC
ATCCTCCTCTTGGCCTCGACGGTGCTGCTTGCCCGGGGGCTGTACGCTGT
GTGTTGTTCCACCTCTTCCTCCCTCCCTTCTATCTCTTGTGGAGGGCAGC
AGCCTTATCCGGGTACCGTCAGTGGGAATTACGAGCCTGTCCACCCTGCC
ACTGTGACCCCGTACATCTCCATGCATGGCAACAGCAGCAGTAGTGGCAG
CACCATTAGTAATAGTAGTCCTGTGCAAGAAGTGTACTACATGGGCGTAC
ACGTCCTGCCTACGTCTACTCCATCCTTGCGGTCCTCCTCCCCCTCGTCC
ACGCACTCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAGCTGGA
GGAAAGACAAGAGGAAGAGATAGAGGAAGGAGCACCTCCTCCCTACTCAG
CGGCGCTGGTGGCGGCGCCAGCGAGCACAGCGACGGTGGTGTGA
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protein sequence of NO04G04110.1

>NO04G04110.1-protein ID=NO04G04110.1-protein|Name=NO04G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MSPPRRRPRLLLAVAVFLSFFIFSLLPIITEAGRNSKSVRRQAGQSRLTR
AAPGGAAAATAHLPFLVMPVKDSSLKPTFDNTAGNQTSSLHSAKNVVPNT
KVLVPSTAGTESLLPYEGAEVVFHRRPPPGVETLTKAEFAELKDEEDDEP
TTDFDGTSGDAPYDGDDETTDGVMALSLLGLVCWISFSALLVACFVQTEK
RREEMLRFWRAIDSNPDLRQAVEQAAGGGAFPKFSKHAGLYRFLRAIAVA
LIVTRGGRERRWRGEGEGGTGGRGNISPLDPTGMGNEGTSDSTPVMGMVV
LILLLASTVLLARGLYAVCCSTSSSLPSISCGGQQPYPGTVSGNYEPVHP
ATVTPYISMHGNSSSSGSTISNSSPVQEVYYMGVHVLPTSTPSLRSSSPS
STHSQQQQQQQQPQQQLEERQEEEIEEGAPPPYSAALVAAPASTATVV*
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Synonyms
Publications