NO04G04110.1, NO04G04110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04110.1
Unique NameNO04G04110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr4:1118225..1119618 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1118225..1119618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04110.1 vs.
Match: XP_005852403.1 (hypothetical protein NGA_0705100 [Nannochloropsis gaditana CCMP526]; EKU23430.1 hypothetical protein NGA_0705100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.0 bits (323), Expect = 3.600e-26
Identity = 99/232 (42.67%), Postives = 123/232 (53.02%), Query Frame = 0 
Query:   30 TEAGRNSKSVRRQAGQSRL----TRAAPGGAAAATAHLPFLVMPVKDSSLKPTFDNTAGNQTSSLHSAKNVVPNTKVLVPSTAGTESLLPYEGAEVVFHRRPPPGVETLTKAEFAELKDEEDDEPTTDFDGTSG-DAPYDGDDETTDGVMALSLLGLVCWISFSALLVACFVQTEKRREEMLRFWRAIDSNPDLRQAVEQAAGGGAFPKFSKHAGLYRFLRAIAVALIVTRG 257
            T A  ++ SVRR  G +RL      AA   A AA A LPFL  P K S L PT  +T      S  +AK V P     +P         P+   +       P     +  A   +        PT    G  G +A  +  DET DG +ALSLLGL  WI+ SALLV  FVQ+EKRRE MLRFWRAID+NP+LR+AVE+ AGG   P++ +  GL+RF RA  VAL+VT G
Sbjct:   28 TCAHGDATSVRRLGG-TRLWWTSRTAASVAAEAAAAALPFLAAPAKTSFLLPTVAST-----ESARAAKTV-PVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYSAPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVG 252
The following BLAST results are available for this feature:
BLAST of NO04G04110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852403.13.600e-2642.67hypothetical protein NGA_0705100 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04110NO04G04110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04110.1NO04G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04110.1.cds1NO04G04110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04110.1.cds2NO04G04110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04110.1 ID=NO04G04110.1|Name=NO04G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
ATGAGCCCTCCCCGTCGTCGTCCCCGCCTGCTCCTGGCTGTGGCCGTATT
CCTCTCCTTCTTTATTTTTTCTCTGCTGCCCATTATCACGGAAGCGGGAC
GAAACTCCAAGAGTGTCAGGCGTCAGGCAGGTCAATCGAGACTGACTCGA
GCAGCACCAGGAGGAGCAGCAGCAGCCACTGCACACTTGCCTTTCCTAGT
TATGCCGGTCAAAGATTCGAGTTTAAAACCCACATTTGACAACACAGCTG
GAAATCAAACATCTTCTTTGCATTCTGCCAAAAATGTTGTTCCAAACACG
AAAGTGTTGGTGCCCTCTACGGCTGGTACAGAAAGCCTCTTACCATACGA
AGGAGCCGAGGTCGTCTTCCATCGCCGTCCTCCTCCCGGCGTAGAAACTC
TCACGAAAGCTGAATTCGCAGAACTTAAAGACGAAGAAGATGACGAGCCC
ACCACTGACTTTGACGGGACAAGTGGTGACGCCCCCTACGACGGCGATGA
TGAAACAACCGACGGCGTCATGGCTCTCTCTCTCCTGGGACTGGTGTGCT
GGATATCTTTCTCCGCCCTCCTCGTCGCTTGCTTCGTCCAAACAGAAAAG
AGACGCGAAGAAATGCTCCGGTTCTGGCGCGCCATTGACTCGAACCCCGA
CTTGAGGCAGGCAGTTGAACAAGCAGCAGGAGGGGGGGCGTTCCCCAAGT
TTAGCAAGCATGCAGGCCTCTATCGCTTTTTGCGTGCGATTGCCGTGGCG
TTAATTGTAACGCGCGGCGGGAGGGAAAGGCGATGGAGGGGGGAGGGAGA
GGGAGGAACTGGGGGACGAGGGAATATCTCGCCCTTGGATCCGACGGGAA
TGGGCAACGAGGGCACGAGCGACAGCACCCCCGTCATGGGGATGGTGGTC
CTCATCCTCCTCTTGGCCTCGACGGTGCTGCTTGCCCGGGGGCTGTACGC
TGTGTGTTGTTCCACCTCTTCCTCCCTCCCTTCTATCTCTTGTGGAGGGC
AGCAGCCTTATCCGGGTACCGTCAGTGGGAATTACGAGCCTGTCCACCCT
GCCACTGTGACCCCGTACATCTCCATGCATGGCAACAGCAGCAGTAGTGG
CAGCACCATTAGTAATAGTAGTCCTGTGCAAGAAGTGTACTACATGGGCG
TACACGTCCTGCCTACGTCTACTCCATCCTTGCGGTCCTCCTCCCCCTCG
TCCACGCACTCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAGCT
GGAGGAAAGACAAGAGGAAGAGATAGAGGAAGGAGCACCTCCTCCCTACT
CAGCGGCGCTGGTGGCGGCGCCAGCGAGCACAGCGACGGTGGTGTGA
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protein sequence of NO04G04110.1

>NO04G04110.1-protein ID=NO04G04110.1-protein|Name=NO04G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MSPPRRRPRLLLAVAVFLSFFIFSLLPIITEAGRNSKSVRRQAGQSRLTR
AAPGGAAAATAHLPFLVMPVKDSSLKPTFDNTAGNQTSSLHSAKNVVPNT
KVLVPSTAGTESLLPYEGAEVVFHRRPPPGVETLTKAEFAELKDEEDDEP
TTDFDGTSGDAPYDGDDETTDGVMALSLLGLVCWISFSALLVACFVQTEK
RREEMLRFWRAIDSNPDLRQAVEQAAGGGAFPKFSKHAGLYRFLRAIAVA
LIVTRGGRERRWRGEGEGGTGGRGNISPLDPTGMGNEGTSDSTPVMGMVV
LILLLASTVLLARGLYAVCCSTSSSLPSISCGGQQPYPGTVSGNYEPVHP
ATVTPYISMHGNSSSSGSTISNSSPVQEVYYMGVHVLPTSTPSLRSSSPS
STHSQQQQQQQQPQQQLEERQEEEIEEGAPPPYSAALVAAPASTATVV*
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mRNA from alignment at chr4:1118225..1119618+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04110.1 ID=NO04G04110.1|Name=NO04G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp|location=Sequence derived from alignment at chr4:1118225..1119618+ (Nannochloropsis oceanica)
ATGAGCCCTCCCCGTCGTCGTCCCCGCCTGCTCCTGGCTGTGGCCGTATT
CCTCTCCTTCTTTATTTTTTCTCTGCTGCCCATTATCACGGAAGCGGGAC
GAAACTCCAAGAGTGTCAGGCGTCAGGCAGGTCAATCGAGACTGACTCGA
GCAGCACCAGGAGGAGCAGCAGCAGCCACTGCACACTTGCCTTTCCTAGT
TATGCCGGTCAAAGATTCGAGTTTAAAACCCACATTTGACAACACAGCTG
GAAATCAAACATCTTCTTTGCATTCTGCCAAAAATGTTGTTCCAAACACG
AAAGTGTTGGTGCCCTCTACGGCTGGTACAGAAAGCCTCTTACCATACGA
AGGAGCCGAGGTCGTCTTCCATCGCCGTCCTCCTCCCGGCGTAGAAACTC
TCACGAAAGCTGAATTCGCAGAACTTAAAGACGAAGAAGATGACGAGCCC
ACCACTGACTTTGACGGGACAAGTGGTGACGCCCCCTACGACGGCGATGA
TGAAACAACCGACGGCGTCATGGCTCTCTCTCTCCTGGGACTGGTGTGCT
GGATATCTTTCTCCGCCCTCCTCGTCGCTTGCTTCGTCCAAACAGAAAAG
AGACGCGAAGAAATGCTCCGGTTCTGGCGCGCCATTGACTCGAACCCCGA
CTTGAGGCAGGCAGTTGAACAAGCAGCAGGAGGGGGGGCGTTCCCCAAGT
TTAGCAAGCATGCAGGCCTCTATCGCTTTTTGCGTGCGATTGCCGTGGCG
TTAATTGTAACGGTAGGTTTAAATCTGGTATTTTTTATGGGCCAGACTCC
GGTACCGAGCGCGGCGGGAGGGAAAGGCGATGGAGGGGGGAGGGAGAGGG
AGGAACTGGGGGACGAGGGAATATCTCGCCCTTGGATCCGACGGGAATGG
GCAACGAGGGCACGAGCGACAGCACCCCCGTCATGGGGATGGTGGTCCTC
ATCCTCCTCTTGGCCTCGACGGTGCTGCTTGCCCGGGGGCTGTACGCTGT
GTGTTGTTCCACCTCTTCCTCCCTCCCTTCTATCTCTTGTGGAGGGCAGC
AGCCTTATCCGGGTACCGTCAGTGGGAATTACGAGCCTGTCCACCCTGCC
ACTGTGACCCCGTACATCTCCATGCATGGCAACAGCAGCAGTAGTGGCAG
CACCATTAGTAATAGTAGTCCTGTGCAAGAAGTGTACTACATGGGCGTAC
ACGTCCTGCCTACGTCTACTCCATCCTTGCGGTCCTCCTCCCCCTCGTCC
ACGCACTCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAGCTGGA
GGAAAGACAAGAGGAAGAGATAGAGGAAGGAGCACCTCCTCCCTACTCAG
CGGCGCTGGTGGCGGCGCCAGCGAGCACAGCGACGGTGGTGTGA
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Coding sequence (CDS) from alignment at chr4:1118225..1119618+

>NO04G04110.1 ID=NO04G04110.1|Name=NO04G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr4:1118225..1119618+ (Nannochloropsis oceanica)
ATGAGCCCTCCCCGTCGTCGTCCCCGCCTGCTCCTGGCTGTGGCCGTATT
CCTCTCCTTCTTTATTTTTTCTCTGCTGCCCATTATCACGGAAGCGGGAC
GAAACTCCAAGAGTGTCAGGCGTCAGGCAGGTCAATCGAGACTGACTCGA
GCAGCACCAGGAGGAGCAGCAGCAGCCACTGCACACTTGCCTTTCCTAGT
TATGCCGGTCAAAGATTCGAGTTTAAAACCCACATTTGACAACACAGCTG
GAAATCAAACATCTTCTTTGCATTCTGCCAAAAATGTTGTTCCAAACACG
AAAGTGTTGGTGCCCTCTACGGCTGGTACAGAAAGCCTCTTACCATACGA
AGGAGCCGAGGTCGTCTTCCATCGCCGTCCTCCTCCCGGCGTAGAAACTC
TCACGAAAGCTGAATTCGCAGAACTTAAAGACGAAGAAGATGACGAGCCC
ACCACTGACTTTGACGGGACAAGTGGTGACGCCCCCTACGACGGCGATGA
TGAAACAACCGACGGCGTCATGGCTCTCTCTCTCCTGGGACTGGTGTGCT
GGATATCTTTCTCCGCCCTCCTCGTCGCTTGCTTCGTCCAAACAGAAAAG
AGACGCGAAGAAATGCTCCGGTTCTGGCGCGCCATTGACTCGAACCCCGA
CTTGAGGCAGGCAGTTGAACAAGCAGCAGGAGGGGGGGCGTTCCCCAAGT
TTAGCAAGCATGCAGGCCTCTATCGCTTTTTGCGTGCGATTGCCGTGGCG
TTAATTGTAACGCGCGGCGGGAGGGAAAGGCGATGGAGGGGGGAGGGAGA
GGGAGGAACTGGGGGACGAGGGAATATCTCGCCCTTGGATCCGACGGGAA
TGGGCAACGAGGGCACGAGCGACAGCACCCCCGTCATGGGGATGGTGGTC
CTCATCCTCCTCTTGGCCTCGACGGTGCTGCTTGCCCGGGGGCTGTACGC
TGTGTGTTGTTCCACCTCTTCCTCCCTCCCTTCTATCTCTTGTGGAGGGC
AGCAGCCTTATCCGGGTACCGTCAGTGGGAATTACGAGCCTGTCCACCCT
GCCACTGTGACCCCGTACATCTCCATGCATGGCAACAGCAGCAGTAGTGG
CAGCACCATTAGTAATAGTAGTCCTGTGCAAGAAGTGTACTACATGGGCG
TACACGTCCTGCCTACGTCTACTCCATCCTTGCGGTCCTCCTCCCCCTCG
TCCACGCACTCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAACAGCAGCT
GGAGGAAAGACAAGAGGAAGAGATAGAGGAAGGAGCACCTCCTCCCTACT
CAGCGGCGCTGGTGGCGGCGCCAGCGAGCACAGCGACGGTGGTGTGA
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Synonyms
Publications