NO04G04050, NO04G04050 (gene) Nannochloropsis oceanica

Overview
NameNO04G04050
Unique NameNO04G04050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1805
Alignment locationchr4:1084732..1086536 -

Link to JBrowse

Properties
Property NameValue
Descriptionwinged-helix DNA-binding transcription factor family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1084732..1086536 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR027725HSF_fam
IPR000232HSF_DNA-bd
Homology
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: XP_005854517.1 (ion channel [Nannochloropsis gaditana CCMP526] >EKU21844.1 ion channel [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.8 bits (377), Expect = 2.600e-32
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 0 
Query:  246 PEFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            PEFLVKL+R+L  ED  +I WD+G+IHV DP  LG  VLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTN  LS  ++KSLL +KRK
Sbjct:  128 PEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRK 220
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: EWM27756.1 (ion channel [Nannochloropsis gaditana])

HSP 1 Score: 149.8 bits (377), Expect = 2.600e-32
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 0 
Query:  246 PEFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            PEFLVKL+R+L  ED  +I WD+G+IHV DP  LG  VLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTN  LS  ++KSLL +KRK
Sbjct:  128 PEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRK 220
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: GAX24694.1 (hypothetical protein FisN_4Hh252 [Fistulifera solaris])

HSP 1 Score: 114.4 bits (285), Expect = 1.200e-21
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 0 
Query:  247 EFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            EFL +L +ML  ++  VI W  GRI VH P+ L  EVLHKYFRHSK++SFQRQLNYFGFRK  GKGKMS C+Y N D + S ++SLL IKRK
Sbjct:   50 EFLYQLTKMLTDDNNEVIEWSDGRIRVHYPERLEAEVLHKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-DAATSDIRSLLLIKRK 140
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: GAX24167.1 (hypothetical protein FisN_4Lh252 [Fistulifera solaris])

HSP 1 Score: 114.4 bits (285), Expect = 1.200e-21
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 0 
Query:  247 EFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            EFL +L +ML  ++  VI W  GRI VH P+ L  EVLHKYFRHSK++SFQRQLNYFGFRK  GKGKMS C+Y N D + S ++SLL IKRK
Sbjct:   50 EFLYQLTKMLTDDNNEVIEWSDGRIRVHYPERLEAEVLHKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-DAATSDIRSLLLIKRK 140
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: GAX24688.1 (hypothetical protein FisN_4Hh246 [Fistulifera solaris])

HSP 1 Score: 113.2 bits (282), Expect = 2.700e-21
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 0 
Query:  246 PEFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            PEFL +L +ML   +  VI W +G I VH+P  L ++VLHKYFRHSK+SSFQRQLNYFGFRK  GKGKM+ C+Y N + +   + SLLKIKRK
Sbjct:   13 PEFLYQLTKMLTDNNREVIEWSNGMIKVHNPPKLESQVLHKYFRHSKFSSFQRQLNYFGFRKLAGKGKMAPCSYVN-ESTGKEINSLLKIKRK 104
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: XP_002179734.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48720.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 111.3 bits (277), Expect = 1.000e-20
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0 
Query:  247 EFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            EFL +L +ML  E+  +I W  GRI VH P+ L  EVL KYFRHSK++SFQRQLNYFGFRK  GKGKMS C+Y N + + S ++SLL IKRK
Sbjct:   76 EFLYQLTKMLTDENSEIIEWSDGRIKVHYPERLEGEVLQKYFRHSKFASFQRQLNYFGFRKIAGKGKMSPCSYVN-EAATSDIRSLLLIKRK 166
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: GAX24162.1 (hypothetical protein FisN_4Lh246 [Fistulifera solaris])

HSP 1 Score: 111.3 bits (277), Expect = 1.000e-20
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 0 
Query:  246 PEFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            PEFL +L +ML   +  VI W +G I VH+P  L ++V+HKYFRHSK+SSFQRQLNYFGFRK  GKGKM+ C+Y N + +   + SLL+IKRK
Sbjct:   13 PEFLFQLTKMLTDNNREVIEWSNGMIKVHNPPKLESQVMHKYFRHSKFSSFQRQLNYFGFRKLAGKGKMAPCSYVN-ESTGKEINSLLRIKRK 104
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: XP_002179930.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48916.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 110.2 bits (274), Expect = 2.300e-20
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 0 
Query:  246 PEFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            PEFL +L +ML   +  +I W +G+I VH P  L  +VLHKYFRHSK++SFQRQLNYFGFRK  GKGKM+ C+Y N D S   + SLL IKRK
Sbjct:  141 PEFLYQLTKMLTDNNRDIIEWTNGKIEVHSPHKLEAQVLHKYFRHSKFASFQRQLNYFGFRKLAGKGKMAPCSYVNED-SKGDIGSLLLIKRK 232
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: EJK45985.1 (hypothetical protein THAOC_35373 [Thalassiosira oceanica])

HSP 1 Score: 105.9 bits (263), Expect = 4.300e-19
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 0 
Query:  246 PEFLVKLYRMLQYEDPTVICWD----SGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            PEFL +L +ML  ++ ++I W     +GRI VH P  L  EVL KYFRHSKYSSFQRQLNYFGFRK  GKGKMS C+Y N D + + ++ LL +KRK
Sbjct:  486 PEFLYQLTKMLTDDNRSIIEWSTFSGAGRIEVHAPTRLEREVLGKYFRHSKYSSFQRQLNYFGFRKIAGKGKMSPCSYINDD-ATTDIRCLLLMKRK 581
[Close]
BLAST of NO04G04050 vs. NCBI_GenBank
Match: OEU13304.1 (hypothetical protein FRACYDRAFT_262197 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 103.6 bits (257), Expect = 2.100e-18
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 0 
Query:  246 PEFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRK 339
            PEFL +L +ML   +  +I W + +I VH P  L   VL++YFRHSK++SFQRQLNYFGFRK  GKGKM+ C+Y N D +   L SLL IKRK
Sbjct:  194 PEFLYQLTKMLTDNNRDIIEWSNSKIEVHSPHKLETLVLNRYFRHSKFASFQRQLNYFGFRKLAGKGKMAPCSYVN-DATTDELGSLLLIKRK 285
The following BLAST results are available for this feature:
BLAST of NO04G04050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854517.12.600e-3275.27ion channel [Nannochloropsis gaditana CCMP526] >EK... [more]
EWM27756.12.600e-3275.27ion channel [Nannochloropsis gaditana][more]
GAX24694.11.200e-2163.04hypothetical protein FisN_4Hh252 [Fistulifera sola... [more]
GAX24167.11.200e-2163.04hypothetical protein FisN_4Lh252 [Fistulifera sola... [more]
GAX24688.12.700e-2160.22hypothetical protein FisN_4Hh246 [Fistulifera sola... [more]
XP_002179734.11.000e-2060.87predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX24162.11.000e-2058.06hypothetical protein FisN_4Lh246 [Fistulifera sola... [more]
XP_002179930.12.300e-2059.14predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK45985.14.300e-1957.73hypothetical protein THAOC_35373 [Thalassiosira oc... [more]
OEU13304.12.100e-1855.91hypothetical protein FRACYDRAFT_262197 [Fragilario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009388NSK009388Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04050.1NO04G04050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|296093gene_2188Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04050.1NO04G04050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04050 ID=NO04G04050|Name=NO04G04050|organism=Nannochloropsis oceanica|type=gene|length=1805bp
ATGGCCGCTGTTGTGCACCCTGCTGCTGACCACCCCACGGGTCCTCCGGC
CCCCCTCTCCTCCACCTCCTCCTCCCCGTCTTCACCTCCCACCAGTAACG
AGACCAAGGCCACCTCCTCATCCCCCGAATGCGGCTTGCCCAGTCCCCCG
TCCGCCTGTGCCATCCCACCTGTGGCCGTTCCCCCCTCTGGCTTGCTCGC
AGAGATGAGCTCGCACCCGCCCCCCCAAGTAGAGCCCTTGACCGACCTGC
CTCATCCTCCTCCTCCTTCGGGCCTCGGCCCTCACTCCTACGAAGGCGGC
CCCCCTCCTCACTCCTATGCACATCACCATCTACCCCCGCCTCCTCCACA
CTTCCACCCCATGGGCCAGCCGGTTGACCCAAACGCTTTCCAGCATCATC
CCCACCCATACTTCGACGTCAATGCGCACCATCACGGGCAGCACGGTGGC
TTCCCACCTCCTCCTCACCACCATCCTTTCTCTCCAAAGTACCTCGGCCC
TCCTCCTCCTGGTGGACTCCCCCCCCCTCCTCCCGGCTTGCCCCTCGGAG
TTCCCTCCCTCCATCCTCACTACCATCAGCACCACCAGCAGCAGCACCAG
CATCAGTACAACATGGCAGCGCACCACCAGCAGCTTCCGGGGGCATCCTT
GCTCATCGGTGGGGGAGGAGGCGCTGGAGGAGGCGCTGGAGGGGGGGCGC
TGCAAGCGCAGCTGTTGGCGAAGAAAAGTAAAAAGCCCGAGTTTCTGGTG
AAGCTTTACCGGATGTTGCAATACGAGGACCCCACGGTGATCTGTTGGGA
CTCGGGCAGGATCCACGTGCACGACCCCAAGGCGTTGGGAAATGAGGTCT
TGCACAAATACTTCCGGCATTCCAAGTACAGCTCGTTTCAGCGGCAGTTG
AATTACTTCGGGTTTCGGAAAACGCAGGGGAAGGGGAAGATGAGTGCATG
CACCTACACGAATTTTGACCTGTCCAACTCGAGCTTGAAAAGCTTGTTGA
AGATCAAGCGGAAGACGAACACGAGCTCCAGGCATGGAGGGGGTGGAATG
GAGGATTACTACGACGGGGAGGAGGACGAGGAGGAGGAGGGTGAGGGGGG
AGGCAATGACCATGAGCACCAGCAGATGAGGCAAGTGCTGGGGAAAGGGG
GGGATACAAGGTTCCATCCGATGATGGGCTTGGCATCGGgtgggatggcg
cctccctcgttgcctcccctggatatgctgcgggcgcagCCGATGGGAGG
AGCAGGGGGAGGGGCGGGGGGGGGAAGGATGACAGGCTGTTGTTTTTGTA
TCAGCTGGCGGCAGCGGAGGGGAAGGGGAAAGGGGGAGGGAAGAAGGGTG
GAAAGAAGGCGGACGAAGATGAGGAGGAGGATGACGAAGATCCAGAGGTG
GAGGACGAAGAGGCGGATGAAGAGGAGGGGGAGCGAGGGGGAGAGGGGGA
GGAAGATCGGACTAGTAGCAGTGTGGGGATGGAGTCGGGGGACGAGGAGA
CAGAGCAGAGGAGGAGAATCAGGATGGGGAGGAAGGCGGAAGCGAAAAAG
GGAGGGGCGAAGGAGGAGATGAAGTTTCAAGGGAAGAAGAAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTGGAGCGGGGGGAGGAGGGGGGAATTA
AGAGGAAGTTTGAAGGAGAAGCGGGAGAGGTCGTAACTAAGGTGAAAAAG
CACGAGGCTGATGAGACAGAGGGGGAGGCAGAGGAGGAGGAGGAGGATGA
GAAGCCCAATCAGCGACAGCAGCAGCCTCAGGTGCCCCCCGCAGTGACGG
CTTAG
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protein sequence of NO04G04050.1

>NO04G04050.1-protein ID=NO04G04050.1-protein|Name=NO04G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MAAVVHPAADHPTGPPAPLSSTSSSPSSPPTSNETKATSSSPECGLPSPP
SACAIPPVAVPPSGLLAEMSSHPPPQVEPLTDLPHPPPPSGLGPHSYEGG
PPPHSYAHHHLPPPPPHFHPMGQPVDPNAFQHHPHPYFDVNAHHHGQHGG
FPPPPHHHPFSPKYLGPPPPGGLPPPPPGLPLGVPSLHPHYHQHHQQQHQ
HQYNMAAHHQQLPGASLLIGGGGGAGGGAGGGALQAQLLAKKSKKPEFLV
KLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQL
NYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRKTNTSSRHGGGGM
EDYYDGEEDEEEEGEGGGNDHEHQQMRQVLGKGGDTRFHPMMGLASADGR
SRGRGGGGKDDRLLFLYQLAAAEGKGKGGGKKGGKKADEDEEEDDEDPEV
EDEEADEEEGERGGEGEEDRTSSSVGMESGDEETEQRRRIRMGRKAEAKK
GGAKEEMKFQGKKKEEEEEEEEEEVERGEEGGIKRKFEGEAGEVVTKVKK
HEADETEGEAEEEEEDEKPNQRQQQPQVPPAVTA*
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Synonyms
Publications