NO04G04050.1, NO04G04050.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04050.1
Unique Name	NO04G04050.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1755
Alignment location	chr4:1084732..1086536 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1084732..1086536 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO04G04050.1 vs.
Match: EWM27756.1 (ion channel [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 1.900e-35
Identity = 93/152 (61.18%), Postives = 107/152 (70.39%), Query Frame = 0

Query:  222 GGGAGGGAGGGALQAQLL----------AKKSKKPEFLVKLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRKTNT-SSRHGGGGMEDY-YDGEEDEE 362
            GGG GG   GGA+ A             +KKS+ PEFLVKL+R+L  ED  +I WD+G+IHV DP  LG  VLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTN  LS  ++KSLL +KRK++T   + GG G ED    GEE EE
Sbjct:   94 GGGYGGFQEGGAVPATATTTTSVASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEGGEGEEDSPLVGEEAEE 245

The following BLAST results are available for this feature:

BLAST of NO04G04050.1 vs.

BLAST of NO04G04050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27756.1	1.900e-35	61.18	ion channel [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G04050	NO04G04050	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04050.1	NO04G04050.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G04050.1.cds1	NO04G04050.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G04050.1.cds2	NO04G04050.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1084732..1086536-
coding sequence from alignment at chr4:1084732..1086536-

mRNA sequence

>NO04G04050.1 ID=NO04G04050.1|Name=NO04G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp
ATGGCCGCTGTTGTGCACCCTGCTGCTGACCACCCCACGGGTCCTCCGGC
CCCCCTCTCCTCCACCTCCTCCTCCCCGTCTTCACCTCCCACCAGTAACG
AGACCAAGGCCACCTCCTCATCCCCCGAATGCGGCTTGCCCAGTCCCCCG
TCCGCCTGTGCCATCCCACCTGTGGCCGTTCCCCCCTCTGGCTTGCTCGC
AGAGATGAGCTCGCACCCGCCCCCCCAAGTAGAGCCCTTGACCGACCTGC
CTCATCCTCCTCCTCCTTCGGGCCTCGGCCCTCACTCCTACGAAGGCGGC
CCCCCTCCTCACTCCTATGCACATCACCATCTACCCCCGCCTCCTCCACA
CTTCCACCCCATGGGCCAGCCGGTTGACCCAAACGCTTTCCAGCATCATC
CCCACCCATACTTCGACGTCAATGCGCACCATCACGGGCAGCACGGTGGC
TTCCCACCTCCTCCTCACCACCATCCTTTCTCTCCAAAGTACCTCGGCCC
TCCTCCTCCTGGTGGACTCCCCCCCCCTCCTCCCGGCTTGCCCCTCGGAG
TTCCCTCCCTCCATCCTCACTACCATCAGCACCACCAGCAGCAGCACCAG
CATCAGTACAACATGGCAGCGCACCACCAGCAGCTTCCGGGGGCATCCTT
GCTCATCGGTGGGGGAGGAGGCGCTGGAGGAGGCGCTGGAGGGGGGGCGC
TGCAAGCGCAGCTGTTGGCGAAGAAAAGTAAAAAGCCCGAGTTTCTGGTG
AAGCTTTACCGGATGTTGCAATACGAGGACCCCACGGTGATCTGTTGGGA
CTCGGGCAGGATCCACGTGCACGACCCCAAGGCGTTGGGAAATGAGGTCT
TGCACAAATACTTCCGGCATTCCAAGTACAGCTCGTTTCAGCGGCAGTTG
AATTACTTCGGGTTTCGGAAAACGCAGGGGAAGGGGAAGATGAGTGCATG
CACCTACACGAATTTTGACCTGTCCAACTCGAGCTTGAAAAGCTTGTTGA
AGATCAAGCGGAAGACGAACACGAGCTCCAGGCATGGAGGGGGTGGAATG
GAGGATTACTACGACGGGGAGGAGGACGAGGAGGAGGAGGGTGAGGGGGG
AGGCAATGACCATGAGCACCAGCAGATGAGGCAAGTGCTGGGGAAAGGGG
GGGATACAAGGTTCCATCCGATGATGGGCTTGGCATCGGCCGATGGGAGG
AGCAGGGGGAGGGGCGGGGGGGGGAAGGATGACAGGCTGTTGTTTTTGTA
TCAGCTGGCGGCAGCGGAGGGGAAGGGGAAAGGGGGAGGGAAGAAGGGTG
GAAAGAAGGCGGACGAAGATGAGGAGGAGGATGACGAAGATCCAGAGGTG
GAGGACGAAGAGGCGGATGAAGAGGAGGGGGAGCGAGGGGGAGAGGGGGA
GGAAGATCGGACTAGTAGCAGTGTGGGGATGGAGTCGGGGGACGAGGAGA
CAGAGCAGAGGAGGAGAATCAGGATGGGGAGGAAGGCGGAAGCGAAAAAG
GGAGGGGCGAAGGAGGAGATGAAGTTTCAAGGGAAGAAGAAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTGGAGCGGGGGGAGGAGGGGGGAATTA
AGAGGAAGTTTGAAGGAGAAGCGGGAGAGGTCGTAACTAAGGTGAAAAAG
CACGAGGCTGATGAGACAGAGGGGGAGGCAGAGGAGGAGGAGGAGGATGA
GAAGCCCAATCAGCGACAGCAGCAGCCTCAGGTGCCCCCCGCAGTGACGG
CTTAG

protein sequence of NO04G04050.1

>NO04G04050.1-protein ID=NO04G04050.1-protein|Name=NO04G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MAAVVHPAADHPTGPPAPLSSTSSSPSSPPTSNETKATSSSPECGLPSPP
SACAIPPVAVPPSGLLAEMSSHPPPQVEPLTDLPHPPPPSGLGPHSYEGG
PPPHSYAHHHLPPPPPHFHPMGQPVDPNAFQHHPHPYFDVNAHHHGQHGG
FPPPPHHHPFSPKYLGPPPPGGLPPPPPGLPLGVPSLHPHYHQHHQQQHQ
HQYNMAAHHQQLPGASLLIGGGGGAGGGAGGGALQAQLLAKKSKKPEFLV
KLYRMLQYEDPTVICWDSGRIHVHDPKALGNEVLHKYFRHSKYSSFQRQL
NYFGFRKTQGKGKMSACTYTNFDLSNSSLKSLLKIKRKTNTSSRHGGGGM
EDYYDGEEDEEEEGEGGGNDHEHQQMRQVLGKGGDTRFHPMMGLASADGR
SRGRGGGGKDDRLLFLYQLAAAEGKGKGGGKKGGKKADEDEEEDDEDPEV
EDEEADEEEGERGGEGEEDRTSSSVGMESGDEETEQRRRIRMGRKAEAKK
GGAKEEMKFQGKKKEEEEEEEEEEVERGEEGGIKRKFEGEAGEVVTKVKK
HEADETEGEAEEEEEDEKPNQRQQQPQVPPAVTA*

mRNA from alignment at chr4:1084732..1086536-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G04050.1 ID=NO04G04050.1|Name=NO04G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1805bp|location=Sequence derived from alignment at chr4:1084732..1086536- (Nannochloropsis oceanica)
ATGGCCGCTGTTGTGCACCCTGCTGCTGACCACCCCACGGGTCCTCCGGC
CCCCCTCTCCTCCACCTCCTCCTCCCCGTCTTCACCTCCCACCAGTAACG
AGACCAAGGCCACCTCCTCATCCCCCGAATGCGGCTTGCCCAGTCCCCCG
TCCGCCTGTGCCATCCCACCTGTGGCCGTTCCCCCCTCTGGCTTGCTCGC
AGAGATGAGCTCGCACCCGCCCCCCCAAGTAGAGCCCTTGACCGACCTGC
CTCATCCTCCTCCTCCTTCGGGCCTCGGCCCTCACTCCTACGAAGGCGGC
CCCCCTCCTCACTCCTATGCACATCACCATCTACCCCCGCCTCCTCCACA
CTTCCACCCCATGGGCCAGCCGGTTGACCCAAACGCTTTCCAGCATCATC
CCCACCCATACTTCGACGTCAATGCGCACCATCACGGGCAGCACGGTGGC
TTCCCACCTCCTCCTCACCACCATCCTTTCTCTCCAAAGTACCTCGGCCC
TCCTCCTCCTGGTGGACTCCCCCCCCCTCCTCCCGGCTTGCCCCTCGGAG
TTCCCTCCCTCCATCCTCACTACCATCAGCACCACCAGCAGCAGCACCAG
CATCAGTACAACATGGCAGCGCACCACCAGCAGCTTCCGGGGGCATCCTT
GCTCATCGGTGGGGGAGGAGGCGCTGGAGGAGGCGCTGGAGGGGGGGCGC
TGCAAGCGCAGCTGTTGGCGAAGAAAAGTAAAAAGCCCGAGTTTCTGGTG
AAGCTTTACCGGATGTTGCAATACGAGGACCCCACGGTGATCTGTTGGGA
CTCGGGCAGGATCCACGTGCACGACCCCAAGGCGTTGGGAAATGAGGTCT
TGCACAAATACTTCCGGCATTCCAAGTACAGCTCGTTTCAGCGGCAGTTG
AATTACTTCGGGTTTCGGAAAACGCAGGGGAAGGGGAAGATGAGTGCATG
CACCTACACGAATTTTGACCTGTCCAACTCGAGCTTGAAAAGCTTGTTGA
AGATCAAGCGGAAGACGAACACGAGCTCCAGGCATGGAGGGGGTGGAATG
GAGGATTACTACGACGGGGAGGAGGACGAGGAGGAGGAGGGTGAGGGGGG
AGGCAATGACCATGAGCACCAGCAGATGAGGCAAGTGCTGGGGAAAGGGG
GGGATACAAGGTTCCATCCGATGATGGGCTTGGCATCGGGTGGGATGGCG
CCTCCCTCGTTGCCTCCCCTGGATATGCTGCGGGCGCAGCCGATGGGAGG
AGCAGGGGGAGGGGCGGGGGGGGGAAGGATGACAGGCTGTTGTTTTTGTA
TCAGCTGGCGGCAGCGGAGGGGAAGGGGAAAGGGGGAGGGAAGAAGGGTG
GAAAGAAGGCGGACGAAGATGAGGAGGAGGATGACGAAGATCCAGAGGTG
GAGGACGAAGAGGCGGATGAAGAGGAGGGGGAGCGAGGGGGAGAGGGGGA
GGAAGATCGGACTAGTAGCAGTGTGGGGATGGAGTCGGGGGACGAGGAGA
CAGAGCAGAGGAGGAGAATCAGGATGGGGAGGAAGGCGGAAGCGAAAAAG
GGAGGGGCGAAGGAGGAGATGAAGTTTCAAGGGAAGAAGAAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTGGAGCGGGGGGAGGAGGGGGGAATTA
AGAGGAAGTTTGAAGGAGAAGCGGGAGAGGTCGTAACTAAGGTGAAAAAG
CACGAGGCTGATGAGACAGAGGGGGAGGCAGAGGAGGAGGAGGAGGATGA
GAAGCCCAATCAGCGACAGCAGCAGCCTCAGGTGCCCCCCGCAGTGACGG
CTTAG

Coding sequence (CDS) from alignment at chr4:1084732..1086536-

>NO04G04050.1 ID=NO04G04050.1|Name=NO04G04050.1|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at chr4:1084732..1086536- (Nannochloropsis oceanica)
ATGGCCGCTGTTGTGCACCCTGCTGCTGACCACCCCACGGGTCCTCCGGC
CCCCCTCTCCTCCACCTCCTCCTCCCCGTCTTCACCTCCCACCAGTAACG
AGACCAAGGCCACCTCCTCATCCCCCGAATGCGGCTTGCCCAGTCCCCCG
TCCGCCTGTGCCATCCCACCTGTGGCCGTTCCCCCCTCTGGCTTGCTCGC
AGAGATGAGCTCGCACCCGCCCCCCCAAGTAGAGCCCTTGACCGACCTGC
CTCATCCTCCTCCTCCTTCGGGCCTCGGCCCTCACTCCTACGAAGGCGGC
CCCCCTCCTCACTCCTATGCACATCACCATCTACCCCCGCCTCCTCCACA
CTTCCACCCCATGGGCCAGCCGGTTGACCCAAACGCTTTCCAGCATCATC
CCCACCCATACTTCGACGTCAATGCGCACCATCACGGGCAGCACGGTGGC
TTCCCACCTCCTCCTCACCACCATCCTTTCTCTCCAAAGTACCTCGGCCC
TCCTCCTCCTGGTGGACTCCCCCCCCCTCCTCCCGGCTTGCCCCTCGGAG
TTCCCTCCCTCCATCCTCACTACCATCAGCACCACCAGCAGCAGCACCAG
CATCAGTACAACATGGCAGCGCACCACCAGCAGCTTCCGGGGGCATCCTT
GCTCATCGGTGGGGGAGGAGGCGCTGGAGGAGGCGCTGGAGGGGGGGCGC
TGCAAGCGCAGCTGTTGGCGAAGAAAAGTAAAAAGCCCGAGTTTCTGGTG
AAGCTTTACCGGATGTTGCAATACGAGGACCCCACGGTGATCTGTTGGGA
CTCGGGCAGGATCCACGTGCACGACCCCAAGGCGTTGGGAAATGAGGTCT
TGCACAAATACTTCCGGCATTCCAAGTACAGCTCGTTTCAGCGGCAGTTG
AATTACTTCGGGTTTCGGAAAACGCAGGGGAAGGGGAAGATGAGTGCATG
CACCTACACGAATTTTGACCTGTCCAACTCGAGCTTGAAAAGCTTGTTGA
AGATCAAGCGGAAGACGAACACGAGCTCCAGGCATGGAGGGGGTGGAATG
GAGGATTACTACGACGGGGAGGAGGACGAGGAGGAGGAGGGTGAGGGGGG
AGGCAATGACCATGAGCACCAGCAGATGAGGCAAGTGCTGGGGAAAGGGG
GGGATACAAGGTTCCATCCGATGATGGGCTTGGCATCGGCCGATGGGAGG
AGCAGGGGGAGGGGCGGGGGGGGGAAGGATGACAGGCTGTTGTTTTTGTA
TCAGCTGGCGGCAGCGGAGGGGAAGGGGAAAGGGGGAGGGAAGAAGGGTG
GAAAGAAGGCGGACGAAGATGAGGAGGAGGATGACGAAGATCCAGAGGTG
GAGGACGAAGAGGCGGATGAAGAGGAGGGGGAGCGAGGGGGAGAGGGGGA
GGAAGATCGGACTAGTAGCAGTGTGGGGATGGAGTCGGGGGACGAGGAGA
CAGAGCAGAGGAGGAGAATCAGGATGGGGAGGAAGGCGGAAGCGAAAAAG
GGAGGGGCGAAGGAGGAGATGAAGTTTCAAGGGAAGAAGAAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTGGAGCGGGGGGAGGAGGGGGGAATTA
AGAGGAAGTTTGAAGGAGAAGCGGGAGAGGTCGTAACTAAGGTGAAAAAG
CACGAGGCTGATGAGACAGAGGGGGAGGCAGAGGAGGAGGAGGAGGATGA
GAAGCCCAATCAGCGACAGCAGCAGCCTCAGGTGCCCCCCGCAGTGACGG
CTTAG

Synonyms

Publications