NO04G03920, NO04G03920 (gene) Nannochloropsis oceanica

Overview
NameNO04G03920
Unique NameNO04G03920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length658
Alignment locationchr4:1055782..1056439 +

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Properties
Property NameValue
DescriptionTranscription regulator
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1055782..1056439 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036065BolA-like_sf
IPR002634BolA
Homology
BLAST of NO04G03920 vs. NCBI_GenBank
Match: EWM28777.1 (transcription regulator [Nannochloropsis gaditana])

HSP 1 Score: 176.8 bits (447), Expect = 4.800e-41
Identity = 95/136 (69.85%), Postives = 111/136 (81.62%), Query Frame = 0
Query:   11 SVLLLFLACFMALTCQGFL----VASPSSSLISFRRTARTSLTAAADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM 143
            ++LL FLA   A +C GF+      SP+ + I     A   L A+A+G++AG+VGAVESCR+KI+AAL PVEL+VKSSNDDPNGSHIALRV+SAAFEGKNRVQRQQ+VYKAIWEELSGPIHAVDELVCRTPAEE M
Sbjct:   11 TILLAFLA---ASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_002177806.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50620.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 104.0 bits (258), Expect = 4.000e-19
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0
Query:   44 ARTSLTAAADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140
            AR + T     A   +   V++C+ KIQ ALS  ++ V  + DDPNGSHI++ V++ AF GK  VQRQQ+VYKAIWEEL GP+HAVD ++C+TP E
Sbjct:   18 ARNTATRQFSTANGPDTTIVQTCQQKIQDALSATDVKVTGAYDDPNGSHISIEVVAEAFAGKRPVQRQQMVYKAIWEELKGPVHAVDAMICKTPDE 113          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: OEU15575.1 (bola-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 103.6 bits (257), Expect = 5.200e-19
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 0
Query:   49 TAAADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEE 141
            TA    + A +   VE+C  KI  AL   ++ V  + DDPNGSHI++ V+S  FEGK  +QRQQ+VYKAIWEEL GP+HAVD ++C+TP EE
Sbjct:   34 TARFMSSSAPDTSVVETCTQKIGDALETTDVKVTGAYDDPNGSHISIEVVSPLFEGKRAMQRQQLVYKAIWEELKGPVHAVDSMICKTPDEE 125          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: GAX12158.1 (hypothetical protein FisN_1Hh083 [Fistulifera solaris])

HSP 1 Score: 103.2 bits (256), Expect = 6.800e-19
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 0
Query:   55 AVAGEVGA--VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140
            +V+GE G   V+ C+ KIQ AL    + V  + DDPNGSHI++ V+S+ F GK  VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E
Sbjct:   42 SVSGEAGTSIVDICQKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFAGKRAVQRQQLVYKAIWEELQGPVHAVDAMVCKTPDE 128          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: GAX21254.1 (hypothetical protein FisN_1Lh083 [Fistulifera solaris])

HSP 1 Score: 102.8 bits (255), Expect = 8.800e-19
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0
Query:   55 AVAGEVGA--VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140
            +V+GE G   V+ C  KIQ AL    + V  + DDPNGSHI++ V+S+ F GK  VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E
Sbjct:   42 SVSGEAGTSLVDICHKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFVGKRAVQRQQLVYKAIWEELQGPVHAVDSMVCKTPDE 128          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_005841507.1 (hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712] >EKX54527.1 hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712])

HSP 1 Score: 98.6 bits (244), Expect = 1.700e-17
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0
Query:   51 AADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM 143
            + D +   E   + +   KI + L PV+L V  +  DPNGSH+ + V+S AFEGK  VQRQQ+VYK IWEE+ G IHAVD++ C+TPAE GM
Sbjct:    2 STDASAPEEDTVMSTIEKKITSELKPVKLEVIPAYGDPNGSHVTINVVSQAFEGKRAVQRQQMVYKVIWEEMQGAIHAVDQMKCQTPAEAGM 93          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: OSX73176.1 (hypothetical protein BU14_0371s0009 [Porphyra umbilicalis])

HSP 1 Score: 95.5 bits (236), Expect = 1.400e-16
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 0
Query:   69 KIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140
            KI  A++P  LVV  S  DPNGSH+ + V+S AFEG N V+R ++VY AIWEELSGPIHAVD+LV +TPAE
Sbjct:   71 KITEAINPTSLVVTPSYGDPNGSHVTINVVSEAFEGLNVVKRHKLVYGAIWEELSGPIHAVDQLVTQTPAE 141          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_005708898.1 (hypothetical protein Gasu_04670 [Galdieria sulphuraria] >EME32378.1 hypothetical protein Gasu_04670 [Galdieria sulphuraria])

HSP 1 Score: 87.0 bits (214), Expect = 5.000e-14
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   63 VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140
            VE    K++ ALSP  L V  + DDPNGSH+++RV+S  FE    ++R Q+VYKAIW+EL GP+HAVD +  +TP E
Sbjct:    9 VERVEQKLREALSPKFLQVTPAFDDPNGSHVSIRVVSEKFENLTSLKRHQLVYKAIWDELQGPVHAVDSIDAKTPKE 85          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: PSC76578.1 (chloroplastic mitochondrial [Micractinium conductrix])

HSP 1 Score: 82.0 bits (201), Expect = 1.600e-12
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 0
Query:   61 GAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM 143
            G +ES R KIQAAL    + V+    D  G H+ + V+S  FEGK+ V RQ++VYKAIWEEL   +HAVD +V RTP E GM
Sbjct:   57 GLMESMRGKIQAALDAQMVTVEDMQGD--GRHVEIVVVSKEFEGKSAVNRQRMVYKAIWEELQETVHAVDAMVTRTPEEAGM 136          
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_005762682.1 (hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516] >EOD10253.1 hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 81.6 bits (200), Expect = 2.100e-12
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0
Query:   63 VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEEL---SGPIHAVDELVCRTPAE 140
            V+ C   ++AAL P  + V  + DDPNGSHI +  +S  FEGK  + RQQ+V+KAIW E+    G +HAVD +V ++P+E
Sbjct:   46 VDRCTAALEAALEPTSVKVMGAYDDPNGSHITIECVSPKFEGKRSLARQQMVFKAIWAEMDGQGGTVHAVDTMVLKSPSE 125          
The following BLAST results are available for this feature:
BLAST of NO04G03920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28777.14.800e-4169.85transcription regulator [Nannochloropsis gaditana][more]
XP_002177806.14.000e-1952.08predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU15575.15.200e-1953.26bola-like protein [Fragilariopsis cylindrus CCMP11... [more]
GAX12158.16.800e-1957.47hypothetical protein FisN_1Hh083 [Fistulifera sola... [more]
GAX21254.18.800e-1957.47hypothetical protein FisN_1Lh083 [Fistulifera sola... [more]
XP_005841507.11.700e-1751.09hypothetical protein GUITHDRAFT_100004 [Guillardia... [more]
OSX73176.11.400e-1663.38hypothetical protein BU14_0371s0009 [Porphyra umbi... [more]
XP_005708898.15.000e-1451.95hypothetical protein Gasu_04670 [Galdieria sulphur... [more]
PSC76578.11.600e-1252.44chloroplastic mitochondrial [Micractinium conductr... [more]
XP_005762682.12.100e-1246.25hypothetical protein EMIHUDRAFT_452727 [Emiliania ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009403NSK009403Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03920.1NO04G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579356gene_2175Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g124gene1813Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03920.1NO04G03920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03920 ID=NO04G03920|Name=NO04G03920|organism=Nannochloropsis oceanica|type=gene|length=658bp
ACAGGCCGCTTTCTTGCTTCTCCCTTTCAGCAAGCCGCTTCTGTCCAACC
TGGAAGATACAAAGCACCATGACCATGCCCTGCCGCCGCTCACCTTCGTC
TGTACTGCTACTCTTCCTCGCCTGTTTCATGGCCCTTACATGCCAAGGCT
TTCTTGTGGCCTCCCCCTCCTCGTCTCTCATTAGCTTCCGCCGGACAGCG
AGAACCTCATTGACAGCAGCCGCCGATGGTGCCGTAGCGGGCGAGGTGGG
GGCTGTGGAGTCCTGCCGTATCAAGATCCAAGCGGCCTTGTCACCCGTAG
AATTGGTGGTCAAGTCTTCGAATGACGACCCAAATGGAAGCCATATTGCT
TTGCGTGTGATCTCGGCGGCGTTTGAGGGGAAGAATCGGGTGCAGCGGCA
GCAGGTGGTGTACAAAGCGATCTGGGAGGAGTTGTCCGGGCCGATTCATG
CTGTAGACGAGTTGGTGTGCCGGACACCTGCGGAGGAAGGGATGTAAATG
AGATAGATATAGAGCGATATTGATATGATTCGATCGGAAGCGGTGGTGAG
TGTGTGAGTGTGAGTGCTTACGGAAGGCTACAGAGTGAGATTGACGTGCT
CTCCTTTTTCGTTGACAACCACGTAGATAAAACAGACACGCCGTTTGAAC
GTTTGACA
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protein sequence of NO04G03920.1

>NO04G03920.1-protein ID=NO04G03920.1-protein|Name=NO04G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MTMPCRRSPSSVLLLFLACFMALTCQGFLVASPSSSLISFRRTARTSLTA
AADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISA
AFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM*
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Synonyms
Publications