NO04G03920.1, NO04G03920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03920.1
Unique NameNO04G03920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length658
Alignment locationchr4:1055782..1056439 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1055782..1056439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03920.1 vs.
Match: EWM28777.1 (transcription regulator [Nannochloropsis gaditana])

HSP 1 Score: 176.8 bits (447), Expect = 4.800e-41
Identity = 95/136 (69.85%), Postives = 112/136 (82.35%), Query Frame = 0 
Query:   11 SVLLLFLACFMALTCQGFLVA----SPSSSLISFRRTARTSLTAAADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM 143
            ++LL FLA   A +C GF+ +    SP+ + I     A   L A+A+G++AG+VGAVESCR+KI+AAL PVEL+VKSSNDDPNGSHIALRV+SAAFEGKNRVQRQQ+VYKAIWEELSGPIHAVDELVCRTPAEE M
Sbjct:   11 TILLAFLA---ASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143
The following BLAST results are available for this feature:
BLAST of NO04G03920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28777.14.800e-4169.85transcription regulator [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03920NO04G03920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03920.1NO04G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03920.1.cds1NO04G03920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03920.1 ID=NO04G03920.1|Name=NO04G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=658bp
ACAGGCCGCTTTCTTGCTTCTCCCTTTCAGCAAGCCGCTTCTGTCCAACC
TGGAAGATACAAAGCACCATGACCATGCCCTGCCGCCGCTCACCTTCGTC
TGTACTGCTACTCTTCCTCGCCTGTTTCATGGCCCTTACATGCCAAGGCT
TTCTTGTGGCCTCCCCCTCCTCGTCTCTCATTAGCTTCCGCCGGACAGCG
AGAACCTCATTGACAGCAGCCGCCGATGGTGCCGTAGCGGGCGAGGTGGG
GGCTGTGGAGTCCTGCCGTATCAAGATCCAAGCGGCCTTGTCACCCGTAG
AATTGGTGGTCAAGTCTTCGAATGACGACCCAAATGGAAGCCATATTGCT
TTGCGTGTGATCTCGGCGGCGTTTGAGGGGAAGAATCGGGTGCAGCGGCA
GCAGGTGGTGTACAAAGCGATCTGGGAGGAGTTGTCCGGGCCGATTCATG
CTGTAGACGAGTTGGTGTGCCGGACACCTGCGGAGGAAGGGATGTAAATG
AGATAGATATAGAGCGATATTGATATGATTCGATCGGAAGCGGTGGTGAG
TGTGTGAGTGTGAGTGCTTACGGAAGGCTACAGAGTGAGATTGACGTGCT
CTCCTTTTTCGTTGACAACCACGTAGATAAAACAGACACGCCGTTTGAAC
GTTTGACA
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protein sequence of NO04G03920.1

>NO04G03920.1-protein ID=NO04G03920.1-protein|Name=NO04G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MTMPCRRSPSSVLLLFLACFMALTCQGFLVASPSSSLISFRRTARTSLTA
AADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISA
AFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM*
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mRNA from alignment at chr4:1055782..1056439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03920.1 ID=NO04G03920.1|Name=NO04G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=658bp|location=Sequence derived from alignment at chr4:1055782..1056439+ (Nannochloropsis oceanica)
ACAGGCCGCTTTCTTGCTTCTCCCTTTCAGCAAGCCGCTTCTGTCCAACC
TGGAAGATACAAAGCACCATGACCATGCCCTGCCGCCGCTCACCTTCGTC
TGTACTGCTACTCTTCCTCGCCTGTTTCATGGCCCTTACATGCCAAGGCT
TTCTTGTGGCCTCCCCCTCCTCGTCTCTCATTAGCTTCCGCCGGACAGCG
AGAACCTCATTGACAGCAGCCGCCGATGGTGCCGTAGCGGGCGAGGTGGG
GGCTGTGGAGTCCTGCCGTATCAAGATCCAAGCGGCCTTGTCACCCGTAG
AATTGGTGGTCAAGTCTTCGAATGACGACCCAAATGGAAGCCATATTGCT
TTGCGTGTGATCTCGGCGGCGTTTGAGGGGAAGAATCGGGTGCAGCGGCA
GCAGGTGGTGTACAAAGCGATCTGGGAGGAGTTGTCCGGGCCGATTCATG
CTGTAGACGAGTTGGTGTGCCGGACACCTGCGGAGGAAGGGATGTAAATG
AGATAGATATAGAGCGATATTGATATGATTCGATCGGAAGCGGTGGTGAG
TGTGTGAGTGTGAGTGCTTACGGAAGGCTACAGAGTGAGATTGACGTGCT
CTCCTTTTTCGTTGACAACCACGTAGATAAAACAGACACGCCGTTTGAAC
GTTTGACA
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Coding sequence (CDS) from alignment at chr4:1055782..1056439+

>NO04G03920.1 ID=NO04G03920.1|Name=NO04G03920.1|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at chr4:1055782..1056439+ (Nannochloropsis oceanica)
ATGACCATGCCCTGCCGCCGCTCACCTTCGTCTGTACTGCTACTCTTCCT
CGCCTGTTTCATGGCCCTTACATGCCAAGGCTTTCTTGTGGCCTCCCCCT
CCTCGTCTCTCATTAGCTTCCGCCGGACAGCGAGAACCTCATTGACAGCA
GCCGCCGATGGTGCCGTAGCGGGCGAGGTGGGGGCTGTGGAGTCCTGCCG
TATCAAGATCCAAGCGGCCTTGTCACCCGTAGAATTGGTGGTCAAGTCTT
CGAATGACGACCCAAATGGAAGCCATATTGCTTTGCGTGTGATCTCGGCG
GCGTTTGAGGGGAAGAATCGGGTGCAGCGGCAGCAGGTGGTGTACAAAGC
GATCTGGGAGGAGTTGTCCGGGCCGATTCATGCTGTAGACGAGTTGGTGT
GCCGGACACCTGCGGAGGAAGGGATGTAA
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Synonyms
Publications