NO04G03880, NO04G03880 (gene) Nannochloropsis oceanica

Overview
NameNO04G03880
Unique NameNO04G03880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2187
Alignment locationchr4:1046283..1048469 +

Link to JBrowse

Properties
Property NameValue
DescriptionBromodomain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1046283..1048469 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain
Homology
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BLAST of NO04G03880 vs. NCBI_GenBank
Match: EWM28679.1 (Bromodomain protein [Nannochloropsis gaditana])

HSP 1 Score: 205.7 bits (522), Expect = 2.400e-49
Identity = 150/334 (44.91%), Postives = 183/334 (54.79%), Query Frame = 0 
Query:    1 MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQHAASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVRRAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQNPLDVDITRENCAALGIPQYFDVIQTPMNLQIIN 335
            MSS+TP    + RS  +E+++ K R+MI  +A+PVPTDY++ LP +  Q+AAS RA   +      +++P LSL+ V+RSM TTQAFGRP EGFSE+QVRRAF LGD EG       R T +VP+P YR+     +                                                                                                  XXXXXXXXXXXXXXXXXXX  P+VDVSK+TGQRRVSDLTQPEVLTIAEE+TKKLRAKRGKG WR+QNPLD +ITRENCAALGIP YFDV++  M+LQ+IN
Sbjct:    1 MSSATP----AYRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAG---KSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHI-----------------------RDGSVLSTDQGKGTEEKAAGKKTVEAAPAVPKLMAVQGSVPPTAKRPKLKAGFLKPADSSTALPEAPSSAESAPVXXXXXXXXXXXXXXXXXXXPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVIN 304
The following BLAST results are available for this feature:
BLAST of NO04G03880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28679.12.400e-4944.91Bromodomain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009408NSK009408Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03880.1NO04G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G03880.2NO04G03880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579324gene_2170Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g120gene1816Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03880.1NO04G03880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G03880.2NO04G03880.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03880 ID=NO04G03880|Name=NO04G03880|organism=Nannochloropsis oceanica|type=gene|length=2187bp
ACAGCTATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCA
CATCGTGGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATG
CAGCCCCCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAG
CAACACGCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAA
TGTCGAAGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGA
CCACCACCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAA
GTCCGGAGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTC
CCCCCCCCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCT
TCTCCAGCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAG
ACCGGCAAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGC
AGAGGCAGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAA
TATCGGCAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAA
AAGCTTAAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTC
CCTCCCCACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTC
CTGCTCCTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCT
CCATTGGTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGG
TCAGAGGCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGgtacgtt
accatggtggcatgagttgaagtggggcttcggattgtattgggggggtt
atccttactatgagagcgaacccaacgacagattctaggacctgagttat
ctctcgacctgaaagcatcgccaccctatacgcgtacttacccactcgtc
aatcaccgcctgcagATCGCTGAAGAGATCACGAAGAAATTGCGGGCCAA
ACGCGGCAAAGGCACGTGGCGGAAACAGAACCCACTCGACGTTGACATCA
CGAGGGAAAACTGCGCGGCCTTGGGGATCCCCCAGTATTTTGACGTGATC
CAGACGCCGATGAATCTGCAGATAATCAATgtaggaatgaatagagggaa
ggagggggagggagggaggcaaagaacgtagcttgacagcgtatggcgcc
ttgctcttacttcctcccccttcccgcgcctcctccctccctccatactt
aacagCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTTTCC
GATGACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGCCTC
TCATCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCCGGA
TGTTGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGCAAA
TAGCAGCAGCAGCAGTCACTGCAGCAGCTGTAGCAGTGACAGTATTTGTA
GAAGTGGTAGTAGTAGTAATTGTAGCAGTAGTAGTGTAGTGGTAGTAGCA
GTAATAATAATAGAAATAGGAAAAGTAGTAGTAGTGGTAGTAGTCGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTAGTAGTAGTAGTAG
TAGTAGTAATAGTAGTATCAGCAGCCGCCACCGCAGCAGCTGTAGTAGTA
GTAGTGGTAGCGGCGGCAGCAGTAGAGACACCTGTCACAACAGTCGGTAC
CTGTGGCAAAATCTTCAGTAAACAGAAAGATAGAGAGGAACATCACTGGC
CCTCTAACAGGATAAGCGAGAGAGAAACGAGAGAGAGCGTGTGTGAGAGA
GATGAGGAAGGAAAGTGATGGTGTGTGTGTGTGTGCGAGAGATACATAGT
ATGACAACTTGGTTTAGCACCAAATAAACAAAACTCACCACCGCAATCAA
ATAATGCCACCACCACCACCACCACCACAACAAAGACAAAGAAAAGGAGA
AAAAGAAGAAGCAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAAGAAGAGT
GAAAGAAAGGAGGAGAAGGAGAAGAATAGCAACAAAAATGACAAGATACC
TCGGATGCCCGACCTCCAATTTTGAGGTTTGTCGCGA
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protein sequence of NO04G03880.1

>NO04G03880.1-protein ID=NO04G03880.1-protein|Name=NO04G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQH
AASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVR
RAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLDSETVAAEEAKTG
KERAAATKKRAAEAAEAEAAAAAAAAAQAATISAATVAATPFAAPTLKKL
KLKASVLTQSSSSSSLPTLAPPILAPTPVLAPAPAAAAPALPPVRAPSPL
VLPPAPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQ
NPLDVDITRENCAALGIPQYFDVIQTPMNLQIINRKIRNSEYKTLREFSD
DVELMVHNAKTFNVASHPVHIFANDTHQLFLRMLQSHKNEYALIDDQSK*
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protein sequence of NO04G03880.2

>NO04G03880.2-protein ID=NO04G03880.2-protein|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQH
AASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVR
RAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLDSETVAAEEAKTG
KERAAATKKRAAEAAEAEAAAAAAAAAQAATISAATVAATPFAAPTLKKL
KLKASVLTQSSSSSSLPTLAPPILAPTPVLAPAPAAAAPALPPVRAPSPL
VLPPAPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQ
NPLDVDITRENCAALGIPQYFDVIQTPMNLQIINVGMNRGKEGEGGRQRT
*
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Synonyms
Publications