NO04G03880.2, NO04G03880.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03880.2
Unique NameNO04G03880.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2015
Alignment locationchr4:1046283..1048469 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1046283..1048469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03880.2 vs.
Match: EWM28679.1 (Bromodomain protein [Nannochloropsis gaditana])

HSP 1 Score: 270.0 bits (689), Expect = 1.000e-68
Identity = 174/334 (52.10%), Postives = 219/334 (65.57%), Query Frame = 0
Query:    1 MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQHAASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVRRAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLDSETVAAEEAKTGKERAAATKKRAAEAAEAEAAAAAAAAAQAATISAATVAATPFAAPTLKKLKLKASVLTQSSSSSSLPTLAPPILAPTPVLAPAPAAAAPALPPVRAPSPLVLPPAPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQNPLDVDITRENCAALGIPQYFDVIQTPMNLQIIN 335
            MSS+TP+     RS  +E+++ K R+MI  +A+PVPTDY++ LP +  Q+AAS RA   +      +++P LSL+ V+RSM TTQAFGRP EGFSE+QVRRAF LGD EG       R T +VP+P YR+     + D   ++ ++ K  +E+AA  K       EA  A     A Q +              PT K+ KLKA  L  + SS++LP  AP      PVLAP PA+     PP  APSPLVLPP P+VDVSK+TGQRRVSDLTQPEVLTIAEE+TKKLRAKRGKG WR+QNPLD +ITRENCAALGIP YFDV++  M+LQ+IN
Sbjct:    1 MSSATPA----YRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAG---KSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKK-----TVEAAPAVPKLMAVQGSV------------PPTAKRPKLKAGFLKPADSSTALPE-APSSAESAPVLAP-PASQ----PPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVIN 304          
The following BLAST results are available for this feature:
BLAST of NO04G03880.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28679.11.000e-6852.10Bromodomain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03880NO04G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03880.2NO04G03880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03880.2.cds1NO04G03880.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03880.2.cds2NO04G03880.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03880.2 ID=NO04G03880.2|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp
ACAGCTATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCA
CATCGTGGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATG
CAGCCCCCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAG
CAACACGCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAA
TGTCGAAGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGA
CCACCACCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAA
GTCCGGAGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTC
CCCCCCCCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCT
TCTCCAGCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAG
ACCGGCAAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGC
AGAGGCAGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAA
TATCGGCAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAA
AAGCTTAAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTC
CCTCCCCACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTC
CTGCTCCTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCT
CCATTGGTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGG
TCAGAGGCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTG
AAGAGATCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGG
AAACAGAACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTT
GGGGATCCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGA
TAATCAATGTAGGAATGAATAGAGGGAAGGAGGGGGAGGGAGGGAGGCAA
AGAACGTAGCTTGACAGCGTATGGCGCCTTGCTCTTACTTCCTCCCCCTT
CCCGCGCCTCCTCCCTCCCTCCATACTTAACAGCGCAAGATTCGCAACTC
CGAGTACAAGACTCTGCGGGAATTTTCCGATGACGTAGAGCTGATGGTGC
ACAACGCCAAGACGTTCAATGTTGCCTCTCATCCGGTCCACATCTTCGCG
AACGATACCCACCAGCTCTTTCTCCGGATGTTGCAGTCGCACAAAAATGA
GTACGCGTTGATAGATGATCAGAGCAAATAGCAGCAGCAGCAGTCACTGC
AGCAGCTGTAGCAGTGACAGTATTTGTAGAAGTGGTAGTAGTAGTAATTG
TAGCAGTAGTAGTGTAGTGGTAGTAGCAGTAATAATAATAGAAATAGGAA
AAGTAGTAGTAGTGGTAGTAGTCGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTGGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTATCAGC
AGCCGCCACCGCAGCAGCTGTAGTAGTAGTAGTGGTAGCGGCGGCAGCAG
TAGAGACACCTGTCACAACAGTCGGTACCTGTGGCAAAATCTTCAGTAAA
CAGAAAGATAGAGAGGAACATCACTGGCCCTCTAACAGGATAAGCGAGAG
AGAAACGAGAGAGAGCGTGTGTGAGAGAGATGAGGAAGGAAAGTGATGGT
GTGTGTGTGTGTGCGAGAGATACATAGTATGACAACTTGGTTTAGCACCA
AATAAACAAAACTCACCACCGCAATCAAATAATGCCACCACCACCACCAC
CACCACAACAAAGACAAAGAAAAGGAGAAAAAGAAGAAGCAGAAGAAGAA
GGAGGAGGAGGAGAAGAAGAAGAAGAGTGAAAGAAAGGAGGAGAAGGAGA
AGAATAGCAACAAAAATGACAAGATACCTCGGATGCCCGACCTCCAATTT
TGAGGTTTGTCGCGA
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protein sequence of NO04G03880.2

>NO04G03880.2-protein ID=NO04G03880.2-protein|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQH
AASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVR
RAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLDSETVAAEEAKTG
KERAAATKKRAAEAAEAEAAAAAAAAAQAATISAATVAATPFAAPTLKKL
KLKASVLTQSSSSSSLPTLAPPILAPTPVLAPAPAAAAPALPPVRAPSPL
VLPPAPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQ
NPLDVDITRENCAALGIPQYFDVIQTPMNLQIINVGMNRGKEGEGGRQRT
*
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mRNA from alignment at chr4:1046283..1048469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03880.2 ID=NO04G03880.2|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp|location=Sequence derived from alignment at chr4:1046283..1048469+ (Nannochloropsis oceanica)
ACAGCTATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCA CATCGTGGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATG CAGCCCCCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAG CAACACGCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAA TGTCGAAGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGA CCACCACCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAA GTCCGGAGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTC CCCCCCCCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCT TCTCCAGCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAG ACCGGCAAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGC AGAGGCAGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAA TATCGGCAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAA AAGCTTAAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTC CCTCCCCACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTC CTGCTCCTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCT CCATTGGTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGG TCAGAGGCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGGTACGTT ACCATGGTGGCATGAGTTGAAGTGGGGCTTCGGATTGTATTGGGGGGGTT ATCCTTACTATGAGAGCGAACCCAACGACAGATTCTAGGACCTGAGTTAT CTCTCGACCTGAAAGCATCGCCACCCTATACGCGTACTTACCCACTCGTC AATCACCGCCTGCAGATCGCTGAAGAGATCACGAAGAAATTGCGGGCCAA ACGCGGCAAAGGCACGTGGCGGAAACAGAACCCACTCGACGTTGACATCA CGAGGGAAAACTGCGCGGCCTTGGGGATCCCCCAGTATTTTGACGTGATC CAGACGCCGATGAATCTGCAGATAATCAATGTAGGAATGAATAGAGGGAA GGAGGGGGAGGGAGGGAGGCAAAGAACGTAGCTTGACAGCGTATGGCGCC TTGCTCTTACTTCCTCCCCCTTCCCGCGCCTCCTCCCTCCCTCCATACTT AACAGCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTTTCC GATGACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGCCTC TCATCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCCGGA TGTTGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGCAAA TAGCAGCAGCAGCAGTCACTGCAGCAGCTGTAGCAGTGACAGTATTTGTA GAAGTGGTAGTAGTAGTAATTGTAGCAGTAGTAGTGTAGTGGTAGTAGCA GTAATAATAATAGAAATAGGAAAAGTAGTAGTAGTGGTAGTAGTCGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTAGTAGTAGTAGTAG TAGTAGTAATAGTAGTATCAGCAGCCGCCACCGCAGCAGCTGTAGTAGTA GTAGTGGTAGCGGCGGCAGCAGTAGAGACACCTGTCACAACAGTCGGTAC CTGTGGCAAAATCTTCAGTAAACAGAAAGATAGAGAGGAACATCACTGGC CCTCTAACAGGATAAGCGAGAGAGAAACGAGAGAGAGCGTGTGTGAGAGA GATGAGGAAGGAAAGTGATGGTGTGTGTGTGTGTGCGAGAGATACATAGT ATGACAACTTGGTTTAGCACCAAATAAACAAAACTCACCACCGCAATCAA ATAATGCCACCACCACCACCACCACCACAACAAAGACAAAGAAAAGGAGA AAAAGAAGAAGCAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAAGAAGAGT GAAAGAAAGGAGGAGAAGGAGAAGAATAGCAACAAAAATGACAAGATACC TCGGATGCCCGACCTCCAATTTTGAGGTTTGTCGCGA
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Coding sequence (CDS) from alignment at chr4:1046283..1048469+

>NO04G03880.2 ID=NO04G03880.2|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr4:1046283..1048469+ (Nannochloropsis oceanica)
ATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCACATCGT
GGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATGCAGCCC
CCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAGCAACAC
GCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAATGTCGA
AGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGACCACCA
CCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAAGTCCGG
AGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTCCCCCCC
CCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCTTCTCCA
GCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAGACCGGC
AAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGCAGAGGC
AGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAATATCGG
CAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAAAAGCTT
AAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTCCCTCCC
CACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTCCTGCTC
CTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCTCCATTG
GTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGGTCAGAG
GCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTGAAGAGA
TCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGGAAACAG
AACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTTGGGGAT
CCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGATAATCA
ATGTAGGAATGAATAGAGGGAAGGAGGGGGAGGGAGGGAGGCAAAGAACG
TAG
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Synonyms
Publications