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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1046283..1048469 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03880.2 vs.
Match: EWM28679.1 (Bromodomain protein [Nannochloropsis gaditana]) HSP 1 Score: 270.0 bits (689), Expect = 1.000e-68 Identity = 174/334 (52.10%), Postives = 219/334 (65.57%), Query Frame = 0
Query: 1 MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQHAASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVRRAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLDSETVAAEEAKTGKERAAATKKRAAEAAEAEAAAAAAAAAQAATISAATVAATPFAAPTLKKLKLKASVLTQSSSSSSLPTLAPPILAPTPVLAPAPAAAAPALPPVRAPSPLVLPPAPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQNPLDVDITRENCAALGIPQYFDVIQTPMNLQIIN 335
MSS+TP+ RS +E+++ K R+MI +A+PVPTDY++ LP + Q+AAS RA + +++P LSL+ V+RSM TTQAFGRP EGFSE+QVRRAF LGD EG R T +VP+P YR+ + D ++ ++ K +E+AA K EA A A Q + PT K+ KLKA L + SS++LP AP PVLAP PA+ PP APSPLVLPP P+VDVSK+TGQRRVSDLTQPEVLTIAEE+TKKLRAKRGKG WR+QNPLD +ITRENCAALGIP YFDV++ M+LQ+IN
Sbjct: 1 MSSATPA----YRSRALEEEMDKFRSMIQNFASPVPTDYIHTLPPDFVQYAASVRAASGSDAG---KSRPRLSLVDVARSMATTQAFGRPMEGFSEDQVRRAFSLGDWEGGSSSPSLRNTAKVPEPIYREIRPIHIRDGSVLSTDQGKGTEEKAAGKK-----TVEAAPAVPKLMAVQGSV------------PPTAKRPKLKAGFLKPADSSTALPE-APSSAESAPVLAP-PASQ----PPAPAPSPLVLPPVPKVDVSKLTGQRRVSDLTQPEVLTIAEEVTKKLRAKRGKGMWRRQNPLDTEITRENCAALGIPGYFDVVERSMSLQVIN 304
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03880.2 ID=NO04G03880.2|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp ACAGCTATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCA CATCGTGGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATG CAGCCCCCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAG CAACACGCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAA TGTCGAAGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGA CCACCACCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAA GTCCGGAGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTC CCCCCCCCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCT TCTCCAGCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAG ACCGGCAAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGC AGAGGCAGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAA TATCGGCAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAA AAGCTTAAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTC CCTCCCCACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTC CTGCTCCTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCT CCATTGGTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGG TCAGAGGCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTG AAGAGATCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGG AAACAGAACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTT GGGGATCCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGA TAATCAATGTAGGAATGAATAGAGGGAAGGAGGGGGAGGGAGGGAGGCAA AGAACGTAGCTTGACAGCGTATGGCGCCTTGCTCTTACTTCCTCCCCCTT CCCGCGCCTCCTCCCTCCCTCCATACTTAACAGCGCAAGATTCGCAACTC CGAGTACAAGACTCTGCGGGAATTTTCCGATGACGTAGAGCTGATGGTGC ACAACGCCAAGACGTTCAATGTTGCCTCTCATCCGGTCCACATCTTCGCG AACGATACCCACCAGCTCTTTCTCCGGATGTTGCAGTCGCACAAAAATGA GTACGCGTTGATAGATGATCAGAGCAAATAGCAGCAGCAGCAGTCACTGC AGCAGCTGTAGCAGTGACAGTATTTGTAGAAGTGGTAGTAGTAGTAATTG TAGCAGTAGTAGTGTAGTGGTAGTAGCAGTAATAATAATAGAAATAGGAA AAGTAGTAGTAGTGGTAGTAGTCGTAGTAGTAGTAGTAGTAGTAGTAGTA GTAGTAGTAGTGGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTATCAGC AGCCGCCACCGCAGCAGCTGTAGTAGTAGTAGTGGTAGCGGCGGCAGCAG TAGAGACACCTGTCACAACAGTCGGTACCTGTGGCAAAATCTTCAGTAAA CAGAAAGATAGAGAGGAACATCACTGGCCCTCTAACAGGATAAGCGAGAG AGAAACGAGAGAGAGCGTGTGTGAGAGAGATGAGGAAGGAAAGTGATGGT GTGTGTGTGTGTGCGAGAGATACATAGTATGACAACTTGGTTTAGCACCA AATAAACAAAACTCACCACCGCAATCAAATAATGCCACCACCACCACCAC CACCACAACAAAGACAAAGAAAAGGAGAAAAAGAAGAAGCAGAAGAAGAA GGAGGAGGAGGAGAAGAAGAAGAAGAGTGAAAGAAAGGAGGAGAAGGAGA AGAATAGCAACAAAAATGACAAGATACCTCGGATGCCCGACCTCCAATTT TGAGGTTTGTCGCGA back to topprotein sequence of NO04G03880.2 >NO04G03880.2-protein ID=NO04G03880.2-protein|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp MSSSTPSPPSSSRSHIVEDQLGKLRAMISKYAAPVPTDYLYALPSNLQQH AASDRAPPYNPINNNVEAKPILSLLQVSRSMTTTQAFGRPYEGFSEEQVR RAFHLGDTEGAPPGSPPRATVRVPKPTYRKFFSSELLDSETVAAEEAKTG KERAAATKKRAAEAAEAEAAAAAAAAAQAATISAATVAATPFAAPTLKKL KLKASVLTQSSSSSSLPTLAPPILAPTPVLAPAPAAAAPALPPVRAPSPL VLPPAPEVDVSKITGQRRVSDLTQPEVLTIAEEITKKLRAKRGKGTWRKQ NPLDVDITRENCAALGIPQYFDVIQTPMNLQIINVGMNRGKEGEGGRQRT * back to topmRNA from alignment at chr4:1046283..1048469+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03880.2 ID=NO04G03880.2|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp|location=Sequence derived from alignment at chr4:1046283..1048469+ (Nannochloropsis oceanica) ACAGCTATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCA
CATCGTGGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATG
CAGCCCCCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAG
CAACACGCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAA
TGTCGAAGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGA
CCACCACCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAA
GTCCGGAGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTC
CCCCCCCCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCT
TCTCCAGCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAG
ACCGGCAAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGC
AGAGGCAGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAA
TATCGGCAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAA
AAGCTTAAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTC
CCTCCCCACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTC
CTGCTCCTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCT
CCATTGGTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGG
TCAGAGGCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGGTACGTT
ACCATGGTGGCATGAGTTGAAGTGGGGCTTCGGATTGTATTGGGGGGGTT
ATCCTTACTATGAGAGCGAACCCAACGACAGATTCTAGGACCTGAGTTAT
CTCTCGACCTGAAAGCATCGCCACCCTATACGCGTACTTACCCACTCGTC
AATCACCGCCTGCAGATCGCTGAAGAGATCACGAAGAAATTGCGGGCCAA
ACGCGGCAAAGGCACGTGGCGGAAACAGAACCCACTCGACGTTGACATCA
CGAGGGAAAACTGCGCGGCCTTGGGGATCCCCCAGTATTTTGACGTGATC
CAGACGCCGATGAATCTGCAGATAATCAATGTAGGAATGAATAGAGGGAA
GGAGGGGGAGGGAGGGAGGCAAAGAACGTAGCTTGACAGCGTATGGCGCC
TTGCTCTTACTTCCTCCCCCTTCCCGCGCCTCCTCCCTCCCTCCATACTT
AACAGCGCAAGATTCGCAACTCCGAGTACAAGACTCTGCGGGAATTTTCC
GATGACGTAGAGCTGATGGTGCACAACGCCAAGACGTTCAATGTTGCCTC
TCATCCGGTCCACATCTTCGCGAACGATACCCACCAGCTCTTTCTCCGGA
TGTTGCAGTCGCACAAAAATGAGTACGCGTTGATAGATGATCAGAGCAAA
TAGCAGCAGCAGCAGTCACTGCAGCAGCTGTAGCAGTGACAGTATTTGTA
GAAGTGGTAGTAGTAGTAATTGTAGCAGTAGTAGTGTAGTGGTAGTAGCA
GTAATAATAATAGAAATAGGAAAAGTAGTAGTAGTGGTAGTAGTCGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTAGTAGTAGTAGTAG
TAGTAGTAATAGTAGTATCAGCAGCCGCCACCGCAGCAGCTGTAGTAGTA
GTAGTGGTAGCGGCGGCAGCAGTAGAGACACCTGTCACAACAGTCGGTAC
CTGTGGCAAAATCTTCAGTAAACAGAAAGATAGAGAGGAACATCACTGGC
CCTCTAACAGGATAAGCGAGAGAGAAACGAGAGAGAGCGTGTGTGAGAGA
GATGAGGAAGGAAAGTGATGGTGTGTGTGTGTGTGCGAGAGATACATAGT
ATGACAACTTGGTTTAGCACCAAATAAACAAAACTCACCACCGCAATCAA
ATAATGCCACCACCACCACCACCACCACAACAAAGACAAAGAAAAGGAGA
AAAAGAAGAAGCAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAAGAAGAGT
GAAAGAAAGGAGGAGAAGGAGAAGAATAGCAACAAAAATGACAAGATACC
TCGGATGCCCGACCTCCAATTTTGAGGTTTGTCGCGA back to topCoding sequence (CDS) from alignment at chr4:1046283..1048469+ >NO04G03880.2 ID=NO04G03880.2|Name=NO04G03880.2|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr4:1046283..1048469+ (Nannochloropsis oceanica) ATGTCGTCCAGCACGCCATCGCCACCGTCATCGTCACGCAGCCACATCGT GGAGGACCAGCTGGGCAAGCTCCGTGCCATGATCAGCAAGTATGCAGCCC CCGTGCCGACCGACTATCTCTATGCTCTTCCCTCAAACCTACAGCAACAC GCCGCCTCAGACCGCGCCCCGCCCTACAACCCTATCAACAACAATGTCGA AGCCAAACCCATCCTCTCTCTTCTCCAAGTTAGCAGGAGCATGACCACCA CCCAAGCATTCGGCCGGCCATATGAGGGCTTTTCCGAGGAGCAAGTCCGG AGAGCTTTCCACCTAGGCGACACGGAAGGTGCTCCCCCTGGTTCCCCCCC CCGCGCCACCGTCCGAGTTCCTAAGCCCACCTATCGCAAATTCTTCTCCA GCGAGCTTCTAGATTCTGAGACTGTCGCCGCCGAGGAAGCCAAGACCGGC AAGGAAAGAGCAGCTGCTACCAAGAAAAGAGCAGCAGAAGCAGCAGAGGC AGAAGCAGCAGCAGCAGCAGCGGCAGCAGCACAAGCAGCAACAATATCGG CAGCCACCGTCGCAGCGACCCCATTCGCAGCGCCTACCTTGAAAAAGCTT AAGCTCAAAGCAAGTGTCCTTACTCAGTCCTCTTCTTCGTCCTCCCTCCC CACTCTTGCTCCACCCATATTGGCGCCCACCCCAGTGCTAGCTCCTGCTC CTGCCGCTGCTGCCCCTGCGCTTCCTCCTGTGCGAGCACCGTCTCCATTG GTCTTGCCTCCCGCCCCCGAGGTGGATGTGTCTAAGATAACGGGTCAGAG GCGAGTCTCCGATTTGACCCAGCCGGAGGTGTTGACGATCGCTGAAGAGA TCACGAAGAAATTGCGGGCCAAACGCGGCAAAGGCACGTGGCGGAAACAG AACCCACTCGACGTTGACATCACGAGGGAAAACTGCGCGGCCTTGGGGAT CCCCCAGTATTTTGACGTGATCCAGACGCCGATGAATCTGCAGATAATCA ATGTAGGAATGAATAGAGGGAAGGAGGGGGAGGGAGGGAGGCAAAGAACG TAG back to top
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