NO04G03820, NO04G03820 (gene) Nannochloropsis oceanica

Overview
NameNO04G03820
Unique NameNO04G03820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1168
Alignment locationchr4:1029344..1030511 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranslocon-associated protein subunit alpha
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1029344..1030511 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005789endoplasmic reticulum membrane
GO:0016021integral component of membrane
GO:0016020membrane
GO:0005789endoplasmic reticulum membrane
Vocabulary: INTERPRO
TermDefinition
IPR005595TRAP_alpha
Homology
BLAST of NO04G03820 vs. NCBI_GenBank
Match: PNH04580.1 (Translocon-associated protein subunit alpha [Tetrabaena socialis])

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 0
Query:   81 HPLTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213
            HPLTN+ P+  ++ T  +    P +    P G P  +     N    P  ++ + GSLN    F  ++ NFT +    +V P +E++V+Y F P   L P  +QVA T+FYE    D   STTFFNQ++ V+
Sbjct:   31 HPLTNL-PASGEIATGVFFPDYPLS-RHFPAGQPVKVVLGVHNDASEPYNVSAIMGSLNNAQQFGTYYWNFTQQLYFQIVEPSKELSVEYTFLPPKDLPPNDYQVALTVFYEAA--DGFKSTTFFNQTVTVI 158          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: KXZ50707.1 (hypothetical protein GPECTOR_15g391 [Gonium pectorale])

HSP 1 Score: 81.3 bits (199), Expect = 4.200e-12
Identity = 49/140 (35.00%), Postives = 72/140 (51.43%), Query Frame = 0
Query:   81 HPLTNMQPS--------HPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213
            HPL+N+ PS         PD  T  +        V+  +G+        +N    P  ++ + GSLN  A FR ++ NFT +    VV PG+E++V+Y F P   L P  +QVA T+FYE    +   STTFFNQ++ V+
Sbjct:   31 HPLSNLPPSGEISTGFFFPDFPTRQFI---AGQAVKTVLGI--------RNDASEPYNISAIMGSLNNAADFRAYYWNFTQQVYFQVVAPGKELSVEYTFLPPKDLPPNDYQVALTVFYEAA--EGFKSTTFFNQTVTVL 157          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_002956041.1 (hypothetical protein VOLCADRAFT_109993 [Volvox carteri f. nagariensis] >EFJ43001.1 hypothetical protein VOLCADRAFT_109993 [Volvox carteri f. nagariensis])

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-11
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 0
Query:   81 HPLTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213
            HPLTN+ P+  ++ T  +    P    +   G P  +    +N+      ++ + GSLN    FR ++ NFT +    +V P +E++V+Y F P   L P  +QVA T+FYE    D   STTFFNQ+I V+
Sbjct:   32 HPLTNLPPA-GEISTGYFFPGYPTR--QFIAGEPVKVVLGVRNEASENYNISMIMGSLNNAQEFRAYYWNFTQQLYFQIVEPSKELSVEYTFLPPKDLPPNDYQVALTVFYEAA--DGFKSTTFFNQTITVL 158          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: GAX75809.1 (hypothetical protein CEUSTIGMA_g3252.t1 [Chlamydomonas eustigma])

HSP 1 Score: 77.8 bits (190), Expect = 4.600e-11
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 0
Query:   77 GQIFHPLTNMQPSHPDVVTHAYADTKPDNIVR-LPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213
            G   HPL+ + P   D++T  +    PD+ V+    G P S+     N       +T + GSLN P  F +  QNFT +    VV  G+E+++ Y F P   L P  F VA T+FY+ +     +S TFFNQ++ ++
Sbjct:   20 GSAPHPLSILPPP-GDIITGYFF---PDHSVKHFAAGKPVSVVLGIHNDASELYNITAIMGSLNTPTDFSIFIQNFTQQIYHQVVLSGQEISIDYTFMPDPRLEPRDFVVALTVFYQ-DKTGQFYSNTFFNQTVEII 151          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_005647802.1 (hypothetical protein COCSUDRAFT_53555 [Coccomyxa subellipsoidea C-169] >EIE23258.1 hypothetical protein COCSUDRAFT_53555 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 76.6 bits (187), Expect = 1.000e-10
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0
Query:   81 HPLTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213
            HPLT++      + T  +    P+   + P G          N     + +T + GSLN    F   +QNFT +P + VV PGEE ++ Y F+P     P  FQVA T+FY        F++TFFN++I +V
Sbjct:   23 HPLTDIPAPLEGLQTVFWLPEYPEK--QFPAGALVEAVVGVHNNAKERVNVTAIVGSLNNAQAFHQFYQNFTYQPQVAVVSPGEEASLSYYFSPDESFPPREFQVALTVFYNTPAGS--FASTFFNETIDIV 150          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: OUS48083.1 (translocon-associated complex TRAP, alpha subunit [Ostreococcus tauri])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 0
Query:   81 HPLTNMQPSHPDVVTHAYADTKPDNI-VRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLL-FVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVVAP 215
            H LT++  ++PDV         PD +    P G    +    +N G   + +TH+AGSLN P+ F  +  NFTVE L   V+ P EE +  Y+F+        + Q+A T FY  E  D  ++TT+FN ++ V+ P
Sbjct:   28 HLLTDIPAANPDVEA---VSVFPDYVDPAFPGGERVKVLLGLRNAGNEEVKVTHLAGSLNVPSNFNFYVANFTVETLADAVIKPREEASFTYEFSVDPQFAGHSLQLALTAFY--EETDVAYATTYFNSTVPVLDP 158          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_022838951.1 (Translocon-associated protein (TRAP), alpha subunit [Ostreococcus tauri] >CEF97896.1 Translocon-associated protein (TRAP), alpha subunit [Ostreococcus tauri])

HSP 1 Score: 71.6 bits (174), Expect = 3.300e-9
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 0
Query:   81 HPLTNMQPSHPDVVTHAYADTKPDNI-VRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLL-FVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVVAP 215
            H LT++  ++PDV         PD +    P G    +    +N G   + +TH+AGSLN P+ F  +  NFTVE     V+ P EE +  Y+F+        + Q+A T FY  E  D  ++TT+FN ++ V+ P
Sbjct:   28 HLLTDIPAANPDVEA---VSVFPDYVDPAFPGGERVKVLLGLRNAGNEEVKVTHLAGSLNVPSNFNFYVANFTVETFADAVIKPREEASFTYEFSVDPQFAGHSLQLALTAFY--EETDVAYATTYFNSTVPVLDP 158          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_005705917.1 (translocon-associated protein alpha subunit [Galdieria sulphuraria] >EME29397.1 translocon-associated protein alpha subunit [Galdieria sulphuraria])

HSP 1 Score: 70.9 bits (172), Expect = 5.700e-9
Identity = 42/148 (28.38%), Postives = 71/148 (47.97%), Query Frame = 0
Query:   81 HPLTNMQPSHPDV-------VTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDD------------MFSTTFFNQSI 210
            HPL+   PS  ++       + +     +P  +V   +GV         N GP P  +  + G+L++PA F  + QNFT+  + + + PG+E+T  Y F P   L P  + ++  +FY+GE  ++            MF TTF+N S+
Sbjct:   52 HPLSRNLPSSSEIEIAYSFSIENEEKSIQPGTLVDCLVGV--------ANGGPFPYRILAIGGALHSPAQFNYYVQNFTLLYVNYTISPGKELTFSYRFQPHMQLEPANYIMSLDLFYDGEPLEEMTKDQERTLSSVMFRTTFYNASL 191          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_013902311.1 (Translocon-associated protein subunit alpha [Monoraphidium neglectum] >KIZ03292.1 Translocon-associated protein subunit alpha [Monoraphidium neglectum])

HSP 1 Score: 70.9 bits (172), Expect = 5.700e-9
Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 0
Query:   83 LTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFL---RPGAFQVAHTIFYEGEGDDDMFSTTFFNQSI 210
            L N+ P+    V H Y    PD   + P G   S+     N G  P+ L+ + GS+N+P  + +  QNFT+      + PG E +++Y F     L       F VA  +FYE EG    FSTTFFNQ++
Sbjct:   29 LGNLPPAGELSVAH-YFPEHPDK--QFPAGDIISVVVSGHNTGAKPMNLSAIVGSINSPEKYEMFIQNFTIGRYFAPLAPGAEASIEYKFRADPILGSTPAREFIVALHLFYEVEG--SYFSTTFFNQTV 153          
BLAST of NO04G03820 vs. NCBI_GenBank
Match: OAO15480.1 (translocon-associated protein alpha subunit [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 70.9 bits (172), Expect = 5.700e-9
Identity = 43/133 (32.33%), Postives = 68/133 (51.13%), Query Frame = 0
Query:   81 HPLTNM-QPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213
            HPLT++ +PS    VT+ +   +       P+  P  +    +N G +   +T+  GSLN    F V+ QNFT       + PG E+   Y F    ++ P  +Q+A T+FY  E D D +++TF N++I VV
Sbjct:   71 HPLTDIPEPSSDIEVTYKFLSEE------FPVAEPIRVIVNLKNNGVTVYNVTNCMGSLNDVDDFSVYHQNFTERNFNSTLYPGYEMNFLYVFGIYNYMDPAEYQLALTVFY--ETDSDYYASTFLNETIEVV 195          
The following BLAST results are available for this feature:
BLAST of NO04G03820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PNH04580.11.100e-1234.85Translocon-associated protein subunit alpha [Tetra... [more]
KXZ50707.14.200e-1235.00hypothetical protein GPECTOR_15g391 [Gonium pector... [more]
XP_002956041.11.200e-1134.85hypothetical protein VOLCADRAFT_109993 [Volvox car... [more]
GAX75809.14.600e-1133.58hypothetical protein CEUSTIGMA_g3252.t1 [Chlamydom... [more]
XP_005647802.11.000e-1033.33hypothetical protein COCSUDRAFT_53555 [Coccomyxa s... [more]
OUS48083.11.100e-933.82translocon-associated complex TRAP, alpha subunit ... [more]
XP_022838951.13.300e-933.09Translocon-associated protein (TRAP), alpha subuni... [more]
XP_005705917.15.700e-928.38translocon-associated protein alpha subunit [Galdi... [more]
XP_013902311.15.700e-934.62Translocon-associated protein subunit alpha [Monor... [more]
OAO15480.15.700e-932.33translocon-associated protein alpha subunit [Blast... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03820.1NO04G03820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668854gene_2167Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03820.1NO04G03820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03820 ID=NO04G03820|Name=NO04G03820|organism=Nannochloropsis oceanica|type=gene|length=1168bp
ATGGCCATGCGCAGAACAACATCCCTCCTGCTTCTCGTCTTGCTACAGGC
CAGCATTGGTCTCGTCCATTCTGACGAGGCACGGGAGAGCAGCATCATAA
GGGCGGCCGAATCCTCGGAGCAGGATAAGCACAACCCTATGTTTAAGgtg
aggatgaaactcgtacaataggagatttcgcccgagagagtagggaggga
gaaaagggtaacagcatggcttcagagctgctgaaaagcatgttagaatg
agaagagttgtatagaattgtaggatggtagccacctctgcttcaatcct
gtccccgaaatttaaggtgagaaatgccgctcatgtctccttccagccca
cttctccttctcccttttactcctccctgaaacagCTCAATAAGCTGACC
AGTAAAGACGGCCAAAGCCCCCGCACAATGAAAGAGCTGGAGAGTATGCT
AGATACTACCTTGGACGGGCAGATATTCCATCCGCTCACTAACATGCAGC
CTTCCCATCCGGACGTCGTCACGCACGCCTATGCCGAgtacgtttgcttg
tgctctgtcaatgctcttcctgtttaagcgaatcaatacgtgcttaaatt
ctagctgtcatatcatgaatttctcttcactcacgttgccctcgaaaccc
cccttctgccccagTACCAAACCCGACAACATCGTCCGCCTCCCCATTGG
CGTGCCCACCTCCATCTTCTGTCTCTTTCAAAACCAAGGACCCTCCCCCC
TGACTCTCACTCACGTGGCGGGCTCCTTAAATGCGCCTGCGACCTTCAGA
GTTCATTTCCAGAATTTCACTGTAGAACCCCTGTTGTTTGTCGTCCCGCC
AGGGGAGGAGGTGACGGTGCAGTATGACTTCACTgtacgtataagatgac
agggaatggagggagtcatcatgtgtttccccgcccatcttgtgcgttta
tcaatgcgcgtgctcggtagcgatcagcttacaccttgttctttctttcc
tccctcctcccgatgctgaatgttcattaacagCCCAAAACTTTCCTTCG
CCCCGGAGCATTTCAAGTGGCACACACAATTTTCTATGAAGGCGAAGGCG
ATGACGATATGTTTTCCACGACCTTTTTCAACCAGAGCATCCTTGTCGTC
GCACCGACGGATATGTAA
back to top

protein sequence of NO04G03820.1

>NO04G03820.1-protein ID=NO04G03820.1-protein|Name=NO04G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MAMRRTTSLLLLVLLQASIGLVHSDEARESSIIRAAESSEQDKHNPMFKL
NKLTSKDGQSPRTMKELESMLDTTLDGQIFHPLTNMQPSHPDVVTHAYAD
TKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQN
FTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMF
STTFFNQSILVVAPTDM*
back to top
Synonyms
Publications