NO04G03820.1, NO04G03820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03820.1
Unique NameNO04G03820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length654
Alignment locationchr4:1029344..1030511 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1029344..1030511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03820.1 vs.
Match: PNH04580.1 (Translocon-associated protein subunit alpha [Tetrabaena socialis])

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 0 
Query:   81 HPLTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213
            HPLTN+ P+  ++ T  +    P +    P G P  +     N    P  ++ + GSLN    F  ++ NFT +    +V P +E++V+Y F P   L P  +QVA T+FYE    D   STTFFNQ++ V+
Sbjct:   31 HPLTNL-PASGEIATGVFFPDYPLSR-HFPAGQPVKVVLGVHNDASEPYNVSAIMGSLNNAQQFGTYYWNFTQQLYFQIVEPSKELSVEYTFLPPKDLPPNDYQVALTVFYEAA--DGFKSTTFFNQTVTVI 158
The following BLAST results are available for this feature:
BLAST of NO04G03820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PNH04580.11.100e-1234.85Translocon-associated protein subunit alpha [Tetra... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03820NO04G03820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03820.1NO04G03820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03820.1.cds1NO04G03820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03820.1.cds2NO04G03820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03820.1.cds3NO04G03820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03820.1.cds4NO04G03820.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03820.1 ID=NO04G03820.1|Name=NO04G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
ATGGCCATGCGCAGAACAACATCCCTCCTGCTTCTCGTCTTGCTACAGGC
CAGCATTGGTCTCGTCCATTCTGACGAGGCACGGGAGAGCAGCATCATAA
GGGCGGCCGAATCCTCGGAGCAGGATAAGCACAACCCTATGTTTAAGCTC
AATAAGCTGACCAGTAAAGACGGCCAAAGCCCCCGCACAATGAAAGAGCT
GGAGAGTATGCTAGATACTACCTTGGACGGGCAGATATTCCATCCGCTCA
CTAACATGCAGCCTTCCCATCCGGACGTCGTCACGCACGCCTATGCCGAT
ACCAAACCCGACAACATCGTCCGCCTCCCCATTGGCGTGCCCACCTCCAT
CTTCTGTCTCTTTCAAAACCAAGGACCCTCCCCCCTGACTCTCACTCACG
TGGCGGGCTCCTTAAATGCGCCTGCGACCTTCAGAGTTCATTTCCAGAAT
TTCACTGTAGAACCCCTGTTGTTTGTCGTCCCGCCAGGGGAGGAGGTGAC
GGTGCAGTATGACTTCACTCCCAAAACTTTCCTTCGCCCCGGAGCATTTC
AAGTGGCACACACAATTTTCTATGAAGGCGAAGGCGATGACGATATGTTT
TCCACGACCTTTTTCAACCAGAGCATCCTTGTCGTCGCACCGACGGATAT
GTAA
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protein sequence of NO04G03820.1

>NO04G03820.1-protein ID=NO04G03820.1-protein|Name=NO04G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MAMRRTTSLLLLVLLQASIGLVHSDEARESSIIRAAESSEQDKHNPMFKL
NKLTSKDGQSPRTMKELESMLDTTLDGQIFHPLTNMQPSHPDVVTHAYAD
TKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQN
FTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMF
STTFFNQSILVVAPTDM*
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mRNA from alignment at chr4:1029344..1030511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03820.1 ID=NO04G03820.1|Name=NO04G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp|location=Sequence derived from alignment at chr4:1029344..1030511+ (Nannochloropsis oceanica)
ATGGCCATGCGCAGAACAACATCCCTCCTGCTTCTCGTCTTGCTACAGGC
CAGCATTGGTCTCGTCCATTCTGACGAGGCACGGGAGAGCAGCATCATAA
GGGCGGCCGAATCCTCGGAGCAGGATAAGCACAACCCTATGTTTAAGGTG
AGGATGAAACTCGTACAATAGGAGATTTCGCCCGAGAGAGTAGGGAGGGA
GAAAAGGGTAACAGCATGGCTTCAGAGCTGCTGAAAAGCATGTTAGAATG
AGAAGAGTTGTATAGAATTGTAGGATGGTAGCCACCTCTGCTTCAATCCT
GTCCCCGAAATTTAAGGTGAGAAATGCCGCTCATGTCTCCTTCCAGCCCA
CTTCTCCTTCTCCCTTTTACTCCTCCCTGAAACAGCTCAATAAGCTGACC
AGTAAAGACGGCCAAAGCCCCCGCACAATGAAAGAGCTGGAGAGTATGCT
AGATACTACCTTGGACGGGCAGATATTCCATCCGCTCACTAACATGCAGC
CTTCCCATCCGGACGTCGTCACGCACGCCTATGCCGAGTACGTTTGCTTG
TGCTCTGTCAATGCTCTTCCTGTTTAAGCGAATCAATACGTGCTTAAATT
CTAGCTGTCATATCATGAATTTCTCTTCACTCACGTTGCCCTCGAAACCC
CCCTTCTGCCCCAGTACCAAACCCGACAACATCGTCCGCCTCCCCATTGG
CGTGCCCACCTCCATCTTCTGTCTCTTTCAAAACCAAGGACCCTCCCCCC
TGACTCTCACTCACGTGGCGGGCTCCTTAAATGCGCCTGCGACCTTCAGA
GTTCATTTCCAGAATTTCACTGTAGAACCCCTGTTGTTTGTCGTCCCGCC
AGGGGAGGAGGTGACGGTGCAGTATGACTTCACTGTACGTATAAGATGAC
AGGGAATGGAGGGAGTCATCATGTGTTTCCCCGCCCATCTTGTGCGTTTA
TCAATGCGCGTGCTCGGTAGCGATCAGCTTACACCTTGTTCTTTCTTTCC
TCCCTCCTCCCGATGCTGAATGTTCATTAACAGCCCAAAACTTTCCTTCG
CCCCGGAGCATTTCAAGTGGCACACACAATTTTCTATGAAGGCGAAGGCG
ATGACGATATGTTTTCCACGACCTTTTTCAACCAGAGCATCCTTGTCGTC
GCACCGACGGATATGTAA
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Coding sequence (CDS) from alignment at chr4:1029344..1030511+

>NO04G03820.1 ID=NO04G03820.1|Name=NO04G03820.1|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr4:1029344..1030511+ (Nannochloropsis oceanica)
ATGGCCATGCGCAGAACAACATCCCTCCTGCTTCTCGTCTTGCTACAGGC
CAGCATTGGTCTCGTCCATTCTGACGAGGCACGGGAGAGCAGCATCATAA
GGGCGGCCGAATCCTCGGAGCAGGATAAGCACAACCCTATGTTTAAGCTC
AATAAGCTGACCAGTAAAGACGGCCAAAGCCCCCGCACAATGAAAGAGCT
GGAGAGTATGCTAGATACTACCTTGGACGGGCAGATATTCCATCCGCTCA
CTAACATGCAGCCTTCCCATCCGGACGTCGTCACGCACGCCTATGCCGAT
ACCAAACCCGACAACATCGTCCGCCTCCCCATTGGCGTGCCCACCTCCAT
CTTCTGTCTCTTTCAAAACCAAGGACCCTCCCCCCTGACTCTCACTCACG
TGGCGGGCTCCTTAAATGCGCCTGCGACCTTCAGAGTTCATTTCCAGAAT
TTCACTGTAGAACCCCTGTTGTTTGTCGTCCCGCCAGGGGAGGAGGTGAC
GGTGCAGTATGACTTCACTCCCAAAACTTTCCTTCGCCCCGGAGCATTTC
AAGTGGCACACACAATTTTCTATGAAGGCGAAGGCGATGACGATATGTTT
TCCACGACCTTTTTCAACCAGAGCATCCTTGTCGTCGCACCGACGGATAT
GTAA
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Synonyms
Publications