NO04G03800, NO04G03800 (gene) Nannochloropsis oceanica

Overview
NameNO04G03800
Unique NameNO04G03800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length900
Alignment locationchr4:1024834..1025733 +

Link to JBrowse

Properties
Property NameValue
DescriptionSulfate permease family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1024834..1025733 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR000727T_SNARE_dom
Homology
BLAST of NO04G03800 vs. NCBI_GenBank
Match: EWM28703.1 (sulfate permease family [Nannochloropsis gaditana])

HSP 1 Score: 286.2 bits (731), Expect = 1.200e-73
Identity = 177/302 (58.61%), Postives = 195/302 (64.57%), Query Frame = 0
Query:    1 MSFQDVAGHQHSNENRFGSSNNGQGRRQYCNRVPISSTTSVMHA---GSGRXXXXXXXXXXXXXXXXXXXXXPPLREALLAYQQQVQLYEKLARVLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKMSKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSENGRIGGEXXXXXXXXXXXXXXXXXXXXXXXXXDLDERLLQEREAEIVLINQSVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQAGCILS 300
            MSFQDVA H HS EN  G+ N G    +Y N   ++S   V      G                        PPLR ALL YQQQVQL+EKL+RVLGGPRDD+ELRSQL AQ  VVKEVG+RVEQ +  Q+R+VEG+ +K EKD+ + E+QKMSKDAQRLKLRFEN  R TA R+REL L GRRAE L  G       G E                         DLDERLLQERE EIV INQSVVKVNEIFRDLG+LVSRQQEDID IEQNVQHSHAAAKSGLEQV KAAKYQAGC LS
Sbjct:    1 MSFQDVASHSHSYEN--GAMNGGV---RYGNGGALTSKPVVTFGESNGRSIYASGSRSATNGSTDHTPGSSVPPLRHALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGN--GDEPGAGGGGQLMERQHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS 295          
BLAST of NO04G03800 vs. NCBI_GenBank
Match: XP_009037166.1 (hypothetical protein AURANDRAFT_71610 [Aureococcus anophagefferens] >EGB08451.1 hypothetical protein AURANDRAFT_71610 [Aureococcus anophagefferens])

HSP 1 Score: 85.9 bits (211), Expect = 2.300e-13
Identity = 79/267 (29.59%), Postives = 117/267 (43.82%), Query Frame = 0
Query:   72 LREALLAYQQQVQLYEKLA-RVLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKMSKDAQRLKLRFENFGRGTAARI----------------------------------RELDLVGRRAEALFDGGSENGRIG----GEXXXXXXXXXXXXXXXXXXXXXXXXXDLDERLLQEREAEIVLINQSVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQAGCILS 300
            + E L  +   V L E+LA  + G PR   EL  Q+ AQ+ VV+E+   + +     +R V+  P + E+ R +A   K+ KD  R+        +GT  R                                   R+L +      +   GG    R+G    G                           +++ +L+ERE EI  INQ+V KVNEIFRDL  LV +QQ ++D I + V+ SHA A+ GL+QV+KAAK Q  C++S
Sbjct:   44 IAENLRQFSHNVSLLERLADHLAGAPRASEELLRQIAAQQDVVEELARVLRKAFGDLVRRVDAAP-RAEQGRARAAHAKLRKDFDRV--------QGTVGRAVDKIKSXXXXXXXXXXXXXXXXXXXXXXXXXXDHRDLRVAVNDRPSSSSGGPH--RVGRAQFGPSDAPGDLDVMIGEERVQLQVAMQEEAINDAILREREEEIREINQNVHKVNEIFRDLATLVDKQQGEVDQIGELVEKSHAHAEKGLDQVQKAAKLQPSCVVS 299          
BLAST of NO04G03800 vs. NCBI_GenBank
Match: CBJ30548.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 79.7 bits (195), Expect = 1.700e-11
Identity = 88/223 (39.46%), Postives = 124/223 (55.61%), Query Frame = 0
Query:   77 LAYQQQVQLYEKLARVLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKMSKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSENGRIGGEXXXXXXXXXXXXXXXXXXXXXXXXXDLDERLLQEREAEIVLINQSVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQAGCILS 300
            + Y Q V L  ++ + LG  RD  ELR Q   Q  V+ E+  +++ Q+  Q +  EG  ++ +  R  A   K++KD  R+     +   GT A  R                         XXXXXXXXXXXXXXXXXXXXXXXX  ++  ++QE E E+  IN+S+ KVNEI+RDL  +V +QQE ++ IE N + +HA A+ GL QV+KA  YQ  C++S
Sbjct:    1 MIYSQNVTLLHRMVQQLGTARDTGELRGQCRCQLQVIGELREKIQAQMRLQQQQAEG-ASRQDAARLSAMNSKLTKDFNRVNAIALDL--GTQAE-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 219          
BLAST of NO04G03800 vs. NCBI_GenBank
Match: XP_002296728.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86929.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.5 bits (184), Expect = 3.200e-10
Identity = 72/223 (32.29%), Postives = 124/223 (55.61%), Query Frame = 0
Query:   80 QQQVQLYEKLARVLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKMSKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSENGRIGGEXXXXXXXXXXXXXXXXXXXXXXXXXD--LDERLLQEREAEIVLINQSVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKA-AKYQAGCILS 300
            Q+ V L EK+AR +G   D++ L++Q   Q  V++++G R+E+Q+ +Q   +  LP + E  +++    K+S+D + ++ +F+N          +LD+  +R                 XXXXXXXXXXXX             +  ++E +++EREAEI  I++ + +VNEI++DL  LV  QQE +D IE  ++++     SGL+ +EKA    Q+ C++S
Sbjct:  202 QRNVALLEKMARSVGTKNDNSVLQTQYNLQLDVIRQLGTRIEKQLQSQESRLSTLP-RTEAAQSRTTHVKLSRDYRLVEQQFKNV---------QLDVKKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEVMRRQMQIQEDRINEEIMREREAEIRNIHKGMHQVNEIYKDLAHLVDNQQEGVDQIETQMENTKENTASGLKHIEKANESQQSQCVVS 414          
BLAST of NO04G03800 vs. NCBI_GenBank
Match: XP_024063625.1 (syntaxin-7 [Terrapene mexicana triunguis])

HSP 1 Score: 64.7 bits (156), Expect = 5.600e-7
Identity = 51/207 (24.64%), Postives = 94/207 (45.41%), Query Frame = 0
Query:   87 EKLARVLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKMSKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSENGRIGGEXXXXXXXXXXXXXXXXXXXXXXXXXDLDERLLQEREAEIVLINQSVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQ 294
            +++   LG P+D  ELR QL  ++    ++    ++     I+    LP   E+ + K +  ++  +       F+   R  A + ++L    R +  +  G SE+G   G                          + D RL++ERE+ I  +   ++ +NEIF+DLG ++  Q + ID IE NV+++    + G +Q+ +AA YQ
Sbjct:  107 QRILHQLGTPQDTPELRQQLQQKQQHTNQLAKETDK----NIKEFGSLPATSEQRQRKIQKDRLVAEFSTALANFQRIQRQAAEKEKDLVARVRASSRVSAGPSEDGYKEG-------TLVSWDSQPQAQVQDEDITEDDLRLIEERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENADVHVQQGNQQLSRAADYQ 302          
BLAST of NO04G03800 vs. NCBI_GenBank
Match: XP_018551675.1 (PREDICTED: syntaxin-7 [Lates calcarifer])

HSP 1 Score: 63.9 bits (154), Expect = 9.500e-7
Identity = 53/207 (25.60%), Postives = 93/207 (44.93%), Query Frame = 0
Query:   87 EKLARVLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKMSKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSENGRIGGEXXXXXXXXXXXXXXXXXXXXXXXXXDLDERLLQEREAEIVLINQSVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQ 294
            ++   +LG  +D ++LR  L  ++    + G ++ +     I+A   LP   ++ + K +  ++  D       F+   R  A R RE  +   RA +   GG      G                           + D RL+QERE+ I  +   +  +N+IF+DLG +V  Q + ID IE NV+++    +SG +Q+ +AA+YQ
Sbjct:   33 QRAVSLLGTEQDSSQLRQSLQQKQ----QQGNQLAKDTDRLIKAFAALPVGPDQRQRKIQKDRLLNDFSAALNSFQKTQRQAADREREF-VARVRASSRVSGGQPEDNFGN--------ASPFQSDSQVQAQTEAITEEDLRLIQERESAIRQLEADITDINDIFKDLGMMVHEQGDMIDSIEANVENADVNVQSGTQQLARAAEYQ 226          
The following BLAST results are available for this feature:
BLAST of NO04G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM28703.11.200e-7358.61sulfate permease family [Nannochloropsis gaditana][more]
XP_009037166.12.300e-1329.59hypothetical protein AURANDRAFT_71610 [Aureococcus... [more]
CBJ30548.11.700e-1139.46Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
XP_002296728.13.200e-1032.29predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_024063625.15.600e-724.64syntaxin-7 [Terrapene mexicana triunguis][more]
XP_018551675.19.500e-725.60PREDICTED: syntaxin-7 [Lates calcarifer][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009416NSK009416Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03800.1NO04G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524341gene_2164Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SNR18gene1821Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03800.1NO04G03800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03800 ID=NO04G03800|Name=NO04G03800|organism=Nannochloropsis oceanica|type=gene|length=900bp
ATGTCCTTCCAAGATGTGGCTGGCCACCAGCATAGCAATGAGAACAGATT
CGGGAGCAGCAACAATGGTCAGGGGCGCAGGCAATACTGCAACCGGGTCC
CCATCTCCTCTACTACCTCTGTGATGCATGCGGGTTCGGGGAGGAGCAGC
AGCAGCAGCAGCACGCACGACGGCAGCAGCAGAAGCAACGGTGGTAGCAG
CCCAAGTCCACCGTTGCGGGAGGCCTTGCTTGCATATCAGCAGCAAGTGC
AGCTGTACGAGAAGCTGGCACGTGTATTGGGAGGGCCTCGCGACGACGCT
GAGCTCCGCAGCCAGCTTCTTGCGCAAGAGTGCGTCGTCAAGGAAGTTGG
TGCGAGGGTAGAGCAACAGATCAGTACCCAGATACGAGCCGTGGAGGGGT
TGCCGACCAAGGGGGAGAAGGATAGGACGAAGGCGGAGATACAGAAGATG
AGTAAGGACGCCCAGAGATTAAAATTACGATTTGAGAATTTTGGAAGGGG
AACCGCGGCAAGAATACGGGAGTTGGACTTGGTGGGACGACGGGCGGAGG
CATTGTTTGACGGGGGGTCAGAAAATGGGAGAATAGGAGGAGAGGCGAGA
GGCGGAGGGGGTCAGAGGATGCAGATGCTTCAGCAGCAGCAGCAGCAGCA
GCAGATGCTGATGCCAGAGGATCTGGACGAGAGATTGTTGCAGGAACGAG
AGGCGGAGATTGTGTTGATCAATCAGTCGGTGGTCAAGGTCAATGAGATC
TTTAGGGATTTGGGGCAGCTGGTGTCGAGGCAGCAGGAGGACATCGACGT
GATCGAGCAAAACGTGCAGCACTCTCATGCCGCGGCCAAGAGTGGGTTGG
AGCAGGTGGAGAAGGCGGCCAAATATCAGGCTGGGTGCATTCTGTCTTGA
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protein sequence of NO04G03800.1

>NO04G03800.1-protein ID=NO04G03800.1-protein|Name=NO04G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MSFQDVAGHQHSNENRFGSSNNGQGRRQYCNRVPISSTTSVMHAGSGRSS
SSSSTHDGSSRSNGGSSPSPPLREALLAYQQQVQLYEKLARVLGGPRDDA
ELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKM
SKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSENGRIGGEAR
GGGGQRMQMLQQQQQQQQMLMPEDLDERLLQEREAEIVLINQSVVKVNEI
FRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQAGCILS*
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Synonyms
Publications