NO04G03800.1, NO04G03800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03800.1
Unique NameNO04G03800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length900
Alignment locationchr4:1024834..1025733 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1024834..1025733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03800.1 vs.
Match: EWM28703.1 (sulfate permease family [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 2.900e-80
Identity = 202/304 (66.45%), Postives = 225/304 (74.01%), Query Frame = 0 
Query:    1 MSFQDVAGHQHSNENRFGSSNNGQGRRQYCNRVPISSTTSVMHAGS-GRS---SSSSSTHDGSSRSNGGSSPSPPLREALLAYQQQVQLYEKLARVLGGPRDDAELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKMSKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDG-GSENGRIGGEARGGGGQRMQMLQQQQQQQQMLMPEDLDERLLQEREAEIVLINQSVVKVNEIFRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQAGCILS 300
            MSFQDVA H HS EN  G+ N G    +Y N   ++S   V    S GRS   S S S  +GS+    GSS  PPLR ALL YQQQVQL+EKL+RVLGGPRDD+ELRSQL AQ  VVKEVG+RVEQ +  Q+R+VEG+ +K EKD+ + E+QKMSKDAQRLKLRFEN  R TA R+REL L GRRAE L  G G  NG   G   GGGGQ M+  Q  QQ+ Q+L  EDLDERLLQERE EIV INQSVVKVNEIFRDLG+LVSRQQEDID IEQNVQHSHAAAKSGLEQV KAAKYQAGC LS
Sbjct:    1 MSFQDVASHSHSYEN--GAMNGGV---RYGNGGALTSKPVVTFGESNGRSIYASGSRSATNGSTDHTPGSSV-PPLRHALLQYQQQVQLFEKLSRVLGGPRDDSELRSQLQAQGSVVKEVGSRVEQLVHAQLRSVEGVRSKAEKDKARLEVQKMSKDAQRLKLRFENLERATAVRLRELKLAGRRAEDLLRGSGMGNGDEPG--AGGGGQLMER-QHGQQEMQLLQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS 295
The following BLAST results are available for this feature:
BLAST of NO04G03800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28703.12.900e-8066.45sulfate permease family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03800NO04G03800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03800.1NO04G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03800.1.cds1NO04G03800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03800.1 ID=NO04G03800.1|Name=NO04G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
ATGTCCTTCCAAGATGTGGCTGGCCACCAGCATAGCAATGAGAACAGATT
CGGGAGCAGCAACAATGGTCAGGGGCGCAGGCAATACTGCAACCGGGTCC
CCATCTCCTCTACTACCTCTGTGATGCATGCGGGTTCGGGGAGGAGCAGC
AGCAGCAGCAGCACGCACGACGGCAGCAGCAGAAGCAACGGTGGTAGCAG
CCCAAGTCCACCGTTGCGGGAGGCCTTGCTTGCATATCAGCAGCAAGTGC
AGCTGTACGAGAAGCTGGCACGTGTATTGGGAGGGCCTCGCGACGACGCT
GAGCTCCGCAGCCAGCTTCTTGCGCAAGAGTGCGTCGTCAAGGAAGTTGG
TGCGAGGGTAGAGCAACAGATCAGTACCCAGATACGAGCCGTGGAGGGGT
TGCCGACCAAGGGGGAGAAGGATAGGACGAAGGCGGAGATACAGAAGATG
AGTAAGGACGCCCAGAGATTAAAATTACGATTTGAGAATTTTGGAAGGGG
AACCGCGGCAAGAATACGGGAGTTGGACTTGGTGGGACGACGGGCGGAGG
CATTGTTTGACGGGGGGTCAGAAAATGGGAGAATAGGAGGAGAGGCGAGA
GGCGGAGGGGGTCAGAGGATGCAGATGCTTCAGCAGCAGCAGCAGCAGCA
GCAGATGCTGATGCCAGAGGATCTGGACGAGAGATTGTTGCAGGAACGAG
AGGCGGAGATTGTGTTGATCAATCAGTCGGTGGTCAAGGTCAATGAGATC
TTTAGGGATTTGGGGCAGCTGGTGTCGAGGCAGCAGGAGGACATCGACGT
GATCGAGCAAAACGTGCAGCACTCTCATGCCGCGGCCAAGAGTGGGTTGG
AGCAGGTGGAGAAGGCGGCCAAATATCAGGCTGGGTGCATTCTGTCTTGA
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protein sequence of NO04G03800.1

>NO04G03800.1-protein ID=NO04G03800.1-protein|Name=NO04G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MSFQDVAGHQHSNENRFGSSNNGQGRRQYCNRVPISSTTSVMHAGSGRSS
SSSSTHDGSSRSNGGSSPSPPLREALLAYQQQVQLYEKLARVLGGPRDDA
ELRSQLLAQECVVKEVGARVEQQISTQIRAVEGLPTKGEKDRTKAEIQKM
SKDAQRLKLRFENFGRGTAARIRELDLVGRRAEALFDGGSENGRIGGEAR
GGGGQRMQMLQQQQQQQQMLMPEDLDERLLQEREAEIVLINQSVVKVNEI
FRDLGQLVSRQQEDIDVIEQNVQHSHAAAKSGLEQVEKAAKYQAGCILS*
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mRNA from alignment at chr4:1024834..1025733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03800.1 ID=NO04G03800.1|Name=NO04G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=900bp|location=Sequence derived from alignment at chr4:1024834..1025733+ (Nannochloropsis oceanica)
ATGTCCTTCCAAGATGTGGCTGGCCACCAGCATAGCAATGAGAACAGATT
CGGGAGCAGCAACAATGGTCAGGGGCGCAGGCAATACTGCAACCGGGTCC
CCATCTCCTCTACTACCTCTGTGATGCATGCGGGTTCGGGGAGGAGCAGC
AGCAGCAGCAGCACGCACGACGGCAGCAGCAGAAGCAACGGTGGTAGCAG
CCCAAGTCCACCGTTGCGGGAGGCCTTGCTTGCATATCAGCAGCAAGTGC
AGCTGTACGAGAAGCTGGCACGTGTATTGGGAGGGCCTCGCGACGACGCT
GAGCTCCGCAGCCAGCTTCTTGCGCAAGAGTGCGTCGTCAAGGAAGTTGG
TGCGAGGGTAGAGCAACAGATCAGTACCCAGATACGAGCCGTGGAGGGGT
TGCCGACCAAGGGGGAGAAGGATAGGACGAAGGCGGAGATACAGAAGATG
AGTAAGGACGCCCAGAGATTAAAATTACGATTTGAGAATTTTGGAAGGGG
AACCGCGGCAAGAATACGGGAGTTGGACTTGGTGGGACGACGGGCGGAGG
CATTGTTTGACGGGGGGTCAGAAAATGGGAGAATAGGAGGAGAGGCGAGA
GGCGGAGGGGGTCAGAGGATGCAGATGCTTCAGCAGCAGCAGCAGCAGCA
GCAGATGCTGATGCCAGAGGATCTGGACGAGAGATTGTTGCAGGAACGAG
AGGCGGAGATTGTGTTGATCAATCAGTCGGTGGTCAAGGTCAATGAGATC
TTTAGGGATTTGGGGCAGCTGGTGTCGAGGCAGCAGGAGGACATCGACGT
GATCGAGCAAAACGTGCAGCACTCTCATGCCGCGGCCAAGAGTGGGTTGG
AGCAGGTGGAGAAGGCGGCCAAATATCAGGCTGGGTGCATTCTGTCTTGA
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Coding sequence (CDS) from alignment at chr4:1024834..1025733+

>NO04G03800.1 ID=NO04G03800.1|Name=NO04G03800.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr4:1024834..1025733+ (Nannochloropsis oceanica)
ATGTCCTTCCAAGATGTGGCTGGCCACCAGCATAGCAATGAGAACAGATT
CGGGAGCAGCAACAATGGTCAGGGGCGCAGGCAATACTGCAACCGGGTCC
CCATCTCCTCTACTACCTCTGTGATGCATGCGGGTTCGGGGAGGAGCAGC
AGCAGCAGCAGCACGCACGACGGCAGCAGCAGAAGCAACGGTGGTAGCAG
CCCAAGTCCACCGTTGCGGGAGGCCTTGCTTGCATATCAGCAGCAAGTGC
AGCTGTACGAGAAGCTGGCACGTGTATTGGGAGGGCCTCGCGACGACGCT
GAGCTCCGCAGCCAGCTTCTTGCGCAAGAGTGCGTCGTCAAGGAAGTTGG
TGCGAGGGTAGAGCAACAGATCAGTACCCAGATACGAGCCGTGGAGGGGT
TGCCGACCAAGGGGGAGAAGGATAGGACGAAGGCGGAGATACAGAAGATG
AGTAAGGACGCCCAGAGATTAAAATTACGATTTGAGAATTTTGGAAGGGG
AACCGCGGCAAGAATACGGGAGTTGGACTTGGTGGGACGACGGGCGGAGG
CATTGTTTGACGGGGGGTCAGAAAATGGGAGAATAGGAGGAGAGGCGAGA
GGCGGAGGGGGTCAGAGGATGCAGATGCTTCAGCAGCAGCAGCAGCAGCA
GCAGATGCTGATGCCAGAGGATCTGGACGAGAGATTGTTGCAGGAACGAG
AGGCGGAGATTGTGTTGATCAATCAGTCGGTGGTCAAGGTCAATGAGATC
TTTAGGGATTTGGGGCAGCTGGTGTCGAGGCAGCAGGAGGACATCGACGT
GATCGAGCAAAACGTGCAGCACTCTCATGCCGCGGCCAAGAGTGGGTTGG
AGCAGGTGGAGAAGGCGGCCAAATATCAGGCTGGGTGCATTCTGTCTTGA
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Synonyms
Publications