NO04G03730, NO04G03730 (gene) Nannochloropsis oceanica

Overview
NameNO04G03730
Unique NameNO04G03730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr4:1009343..1011490 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1009343..1011490 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042023DNA endoreduplication
Vocabulary: Cellular Component
TermDefinition
GO:0009330DNA topoisomerase complex (ATP-hydrolyzing)
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Homology
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BLAST of NO04G03730 vs. NCBI_GenBank
Match: EWM28762.1 (hypothetical protein Naga_100002g103 [Nannochloropsis gaditana])

HSP 1 Score: 273.5 bits (698), Expect = 1.400e-69
Identity = 178/385 (46.23%), Postives = 211/385 (54.81%), Query Frame = 0 
Query:    1 MANDDDDPYLAELLDLVKDDDVKPXXXXXXXXXXXXXXXXXXXXXXXXXVVS---SPS------QYHDSDTHRETLKLLLQLSPAGANLPTAEDVQKAFRTLYPPFQAPQQLINLDDNDEKVFEVSPSTVSTGGARNERTPP--IHLDAVQEELEEHLGATDLFALRDVIRTQVDAWHAGKR-ALLEIV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMDVDDKXXXXXXXXXXXXXXXXXXXXXXXXXXDI----IDKKRKRGTGVVGGRATLPLR-LPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAVGRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLCVLTHQHDQLKAMGGKVV 368
            MA DDDDPYLAELLD+   ++ K                            S   SPS       Y  SDTHRETLKLL QLSPAGA  P+A DV+KAFR LYPPFQ        +  +E V   + S+ S      +R  P    LD +QEELE HL A DLF LRDVI+ ++DAW AGKR AL E+                                     DV++                           ++    + KKRKRG+   GGRATLPL  L  A      SRS L+ELDERDKAQDLTGDSGAVGRVHV+K +G++LDLKGHQYLA L RCPT+LLVS+G+EEAKVEDVV+TLCVLTH HD+L+AMGGKV+
Sbjct:    1 MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQT-------NGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVLKKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVL 378
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BLAST of NO04G03730 vs. NCBI_GenBank
Match: XP_005854432.1 (hypothetical protein NGA_2017520, partial [Nannochloropsis gaditana CCMP526] >EKU21928.1 hypothetical protein NGA_2017520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 169.5 bits (428), Expect = 2.800e-38
Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0 
Query:  258 GGRATLPLR-LPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAVGRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLCVLTHQHDQLKAMGGKVV 368
            GGRATLPL  L  A      SRS L+ELDERDKAQDLTGDSGAVGRVHV+K +G++LDLKGHQYLA L RCPT+LLVS+G+EEAKVEDVV+TLCVLTH HD+L+AMGGKV+
Sbjct:    5 GGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVL 115
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BLAST of NO04G03730 vs. NCBI_GenBank
Match: XP_009844223.1 (hypothetical protein H257_17218 [Aphanomyces astaci] >ETV66317.1 hypothetical protein H257_17218 [Aphanomyces astaci])

HSP 1 Score: 77.0 bits (188), Expect = 1.900e-10
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 0 
Query:  261 ATLPLRLPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAVGRVHV-EKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLCVLTHQHDQLKAMGGKVVS 369
            +TLPL LP +    +T    LV+LD  D   DL+GD GA+GR HV +    ++LDLKG QY+ H+  C + L+VS+G  EAKV+ +V  +C  T   + L  M G V +
Sbjct:   48 STLPLVLPPSFPSRTT---VLVQLD--DSTMDLSGDVGAIGRFHVHDTMSQVLLDLKGEQYVGHVIPCNSYLVVSMGATEAKVDCLVNDVCHATKHRNVLNLMKGVVTA 151
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BLAST of NO04G03730 vs. NCBI_GenBank
Match: GAX94131.1 (Hypothetical protein PINS_002031 [Pythium insidiosum])

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-9
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 0 
Query:  281 LVELDERDKAQDLTGDSGAVGRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLCVLTHQHDQLKAMGGKVVS 369
            LV+L+  D   DL+GD+GA+GR   +    ++LD+KGHQY+  +  C + ++V V   EA+VE V+   C +TH+ D L A+ G V +
Sbjct:    2 LVQLE--DPTMDLSGDTGAIGRFQTQGDSAVMLDIKGHQYIGEIVPCTSFMVVGVXPTEARVECVMNEFCQITHKKDLLTALDGVVTA 87
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BLAST of NO04G03730 vs. NCBI_GenBank
Match: CBN79372.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.1 bits (170), Expect = 2.300e-8
Identity = 41/108 (37.96%), Postives = 66/108 (61.11%), Query Frame = 0 
Query:  263 LPLRLPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAVGRVHV---EKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLCVLTHQHDQLKAMGGKVV 368
            +PL +P AV   + + S LV L  RD+A +  GD+GA+GR+ V   +K +G+  DLKG Q+   +    T+++V +G  EAKVE +   +C L ++ +   AMGG+V+
Sbjct:   59 VPLIVPPAVCKDAKA-SLLVHL--RDEALNFAGDTGAIGRISVGGKKKGRGLTFDLKGQQFSGQIIPSATVMVVGIGKTEAKVEGLFSEVCRLDYKGNVFDAMGGEVL 163
The following BLAST results are available for this feature:
BLAST of NO04G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM28762.11.400e-6946.23hypothetical protein Naga_100002g103 [Nannochlorop... [more]
XP_005854432.12.800e-3875.68hypothetical protein NGA_2017520, partial [Nannoch... [more]
XP_009844223.11.900e-1042.20hypothetical protein H257_17218 [Aphanomyces astac... [more]
GAX94131.11.200e-939.77Hypothetical protein PINS_002031 [Pythium insidios... [more]
CBN79372.12.300e-837.96conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009429NSK009429Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03730.1NO04G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668847gene_2156Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g103gene1830Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03730.1NO04G03730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03730 ID=NO04G03730|Name=NO04G03730|organism=Nannochloropsis oceanica|type=gene|length=2148bp
AGGGCGGGCTCCCGGGGTTTGGTGCGGCCTGTTGCTTGCGCTTGCAGCCA
ACACACGCTCCAACAACAACCAACAGCCACTTCACACGACTGCGACCAAC
CCATATCTATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTT
GACCTGGTCAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAG
TGCCACCGCTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCT
CGACCGTCGTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGG
GAGACGTTGAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCC
TACGGCGGAAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCC
AAGCCCCCCAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTT
GAAGTCAGTCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTAC
CCCCCCAATACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGG
GTGCGACGGACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGAT
GCCTGGCACGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGA
ACAGGAGCGGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGG
CGAAGCAGAAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTT
GATGACAAGAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATC
TCAGCTCTCACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACA
AGAAACGAAAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCC
TTACGGCTACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCT
TGTCGAACTCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTG
GAGCAGTGGGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGAT
TTAAAGGGGCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTT
GTTGGTAAGTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGA
CATTGTGTGTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGA
AAGGTTGTGAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGA
GGGAGGTGGATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGA
ATGAAGGGAAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGG
GATGGAGGGGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGG
GGCGAAGAAGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAG
GAGGAGGAGGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAA
GGAAAGAAGGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTC
GCTGCGAGCGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTG
GTTATGACGACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCG
TTCCAGGAGCCGGATGACGACGATGACAGTGACTGTAGCATATAGAAAAG
CTTAAACATGCTAATGTACAATTCGTAATTATTTCCATGCCCTTACAATA
AGGCGAGGAAAAACTGGAAGGAAGTTACAGTAAAAAAGCAAAGTAAAGAG
GAGAGAAACAGGAGAGAAAGCAGAATCAGAAAACGAATGCGAAAGTGTTT
TTTAAGAACCCAATCCAACTCAACAGTGACGACGAGCAAATGCAAAGCTG
TACAAACCAAAGCCAAAAACAGACAGAAGTAATGTAACGGCGCAAGTGAA
GGTGAATCACGCGATACGACGACCATGACAAGACTGAGTCACCTGTCTTC
GGTCCATCAATCTGTTTTAGTACCTCTTATGTGGCGGCTCTTGGGATGCG
GGCTCACCTTCCTGACCCTTCTATAATTTTATTTCGGGCTGTCGTGTCGG
CTACTTCAACTCTATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
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protein sequence of NO04G03730.1

>NO04G03730.1-protein ID=NO04G03730.1-protein|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MANDDDDPYLAELLDLVKDDDVKPNGSSSSSATASSSQSATNVMKPASTV
VSSPSQYHDSDTHRETLKLLLQLSPAGANLPTAEDVQKAFRTLYPPFQAP
QQLINLDDNDEKVFEVSPSTVSTGGARNERTPPIHLDAVQEELEEHLGAT
DLFALRDVIRTQVDAWHAGKRALLEIVAAKEQERKNWTEEEEKKKEAAKQ
KQQQRKTEKEAMDVDDKSDEDKEQLNGLSQSQLSQSQASQDDVDIIDKKR
KRGTGVVGGRATLPLRLPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAV
GRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLC
VLTHQHDQLKAMGGKVVSRAAGEIKGEEGGEGGGYESEHYRPSDDSENEG
KKKGGGEGGRRGGWDGGGRTVANKRSSGGGGAKKGKCKGGKGGGGGGGGG
GSRKSMGSSLGAGKGKKASASSKRQGPRKVSLRALKQQKKVKQQKGGGYD
DDDSEDEEEDEEESFQEPDDDDDSDCSI*
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Synonyms
Publications