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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1009343..1011490 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03730.1 vs.
Match: EWM28762.1 (hypothetical protein Naga_100002g103 [Nannochloropsis gaditana]) HSP 1 Score: 299.7 bits (766), Expect = 1.800e-77 Identity = 251/547 (45.89%), Postives = 311/547 (56.86%), Query Frame = 0
Query: 1 MANDDDDPYLAELLDLVKDDDVKPNGSSSSSATASSSQSATNVM---------KPASTVVSSPSQYHDSDTHRETLKLLLQLSPAGANLPTAEDVQKAFRTLYPPFQAPQQLINLDDNDEKVFEVSPSTVSTGGARNERTPPI--HLDAVQEELEEHLGATDLFALRDVIRTQVDAWHAGKRALLEIVAAKEQERKNWTEEEEKKKEAAKQKQQQRKTEKEAMDVDDKSDEDKEQLNGLSQSQLSQSQASQDDV-------DIIDKKRKRGTGVVGGRATLPLRLPKAV-SDSSTSRSFLVELDERDKAQDLTGDSGAVGRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLCVLTHQHDQLKAMGGKVVSRAAGEIKGEEGGEGGGYESEHYRPSDDSENEGKKKGGGEGGRRGGWDGGGRTVANKRSSGGGGAKKGKCKGGKGGGGGGGGGGSRKSMGSSLGAGKGKKASASSKRQGPRKVSLRALKQQKKVKQQKGGGYDDDDSEDEEEDEEESFQEPDDDDDSDCSI 529
MA DDDDPYLAELLD+ ++ K S ATA+ + +A + P+ + S Y SDTHRETLKLL QLSPAGA P+A DV+KAFR LYPPFQ + +E V + S+ S +R P LD +QEELE HL A DLF LRDVI+ ++DAW AGKR L +A + K EE E+ +K K ++ + D + E L SQASQD D++ KKRKRG+ GGRATLPL + K+ SRS L+ELDERDKAQDLTGDSGAVGRVHV+K +G++LDLKGHQYLA L RCPT+LLVS+G+EEAKVEDVV+TLCVLTH HD+L+AMGGKV+ R GEE E G E Y G GEG R G + +KR S G G ++ K K G +RK SS GA K + +K+QGP++VSLRALK+ K K S+ +EE+EEESF DDDDDSD S+
Sbjct: 1 MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQT-------NGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVL-KKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRR------GEEEEESVGGEESDY---------GLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQ---------GAARKGGASSAGAPK--RTGMHAKKQGPKRVSLRALKRPKPRK----------GSDVDEEEEEESFS--DDDDDSDFSV 501
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03730.1 ID=NO04G03730.1|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp AGGGCGGGCTCCCGGGGTTTGGTGCGGCCTGTTGCTTGCGCTTGCAGCCA ACACACGCTCCAACAACAACCAACAGCCACTTCACACGACTGCGACCAAC CCATATCTATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTT GACCTGGTCAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAG TGCCACCGCTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCT CGACCGTCGTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGG GAGACGTTGAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCC TACGGCGGAAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCC AAGCCCCCCAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTT GAAGTCAGTCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTAC CCCCCCAATACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGG GTGCGACGGACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGAT GCCTGGCACGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGA ACAGGAGCGGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGG CGAAGCAGAAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTT GATGACAAGAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATC TCAGCTCTCACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACA AGAAACGAAAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCC TTACGGCTACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCT TGTCGAACTCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTG GAGCAGTGGGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGAT TTAAAGGGGCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTT GTTGGTAAGTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGA CATTGTGTGTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGA AAGGTTGTGAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGA GGGAGGTGGATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGA ATGAAGGGAAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGG GATGGAGGGGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGG GGCGAAGAAGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAG GAGGAGGAGGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAA GGAAAGAAGGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTC GCTGCGAGCGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTG GTTATGACGACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCG TTCCAGGAGCCGGATGACGACGATGACAGTGACTGTAGCATATAGAAAAG CTTAAACATGCTAATGTACAATTCGTAATTATTTCCATGCCCTTACAATA AGGCGAGGAAAAACTGGAAGGAAGTTACAGTAAAAAAGCAAAGTAAAGAG GAGAGAAACAGGAGAGAAAGCAGAATCAGAAAACGAATGCGAAAGTGTTT TTTAAGAACCCAATCCAACTCAACAGTGACGACGAGCAAATGCAAAGCTG TACAAACCAAAGCCAAAAACAGACAGAAGTAATGTAACGGCGCAAGTGAA GGTGAATCACGCGATACGACGACCATGACAAGACTGAGTCACCTGTCTTC GGTCCATCAATCTGTTTTAGTACCTCTTATGTGGCGGCTCTTGGGATGCG GGCTCACCTTCCTGACCCTTCTATAATTTTATTTCGGGCTGTCGTGTCGG CTACTTCAACTCTATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT back to topprotein sequence of NO04G03730.1 >NO04G03730.1-protein ID=NO04G03730.1-protein|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp MANDDDDPYLAELLDLVKDDDVKPNGSSSSSATASSSQSATNVMKPASTV VSSPSQYHDSDTHRETLKLLLQLSPAGANLPTAEDVQKAFRTLYPPFQAP QQLINLDDNDEKVFEVSPSTVSTGGARNERTPPIHLDAVQEELEEHLGAT DLFALRDVIRTQVDAWHAGKRALLEIVAAKEQERKNWTEEEEKKKEAAKQ KQQQRKTEKEAMDVDDKSDEDKEQLNGLSQSQLSQSQASQDDVDIIDKKR KRGTGVVGGRATLPLRLPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAV GRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLC VLTHQHDQLKAMGGKVVSRAAGEIKGEEGGEGGGYESEHYRPSDDSENEG KKKGGGEGGRRGGWDGGGRTVANKRSSGGGGAKKGKCKGGKGGGGGGGGG GSRKSMGSSLGAGKGKKASASSKRQGPRKVSLRALKQQKKVKQQKGGGYD DDDSEDEEEDEEESFQEPDDDDDSDCSI* back to topmRNA from alignment at chr4:1009343..1011490- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03730.1 ID=NO04G03730.1|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at chr4:1009343..1011490- (Nannochloropsis oceanica) AGGGCGGGCTCCCGGGGTTTGGTGCGGCCTGTTGCTTGCGCTTGCAGCCA
ACACACGCTCCAACAACAACCAACAGCCACTTCACACGACTGCGACCAAC
CCATATCTATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTT
GACCTGGTCAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAG
TGCCACCGCTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCT
CGACCGTCGTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGG
GAGACGTTGAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCC
TACGGCGGAAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCC
AAGCCCCCCAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTT
GAAGTCAGTCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTAC
CCCCCCAATACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGG
GTGCGACGGACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGAT
GCCTGGCACGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGA
ACAGGAGCGGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGG
CGAAGCAGAAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTT
GATGACAAGAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATC
TCAGCTCTCACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACA
AGAAACGAAAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCC
TTACGGCTACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCT
TGTCGAACTCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTG
GAGCAGTGGGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGAT
TTAAAGGGGCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTT
GTTGGTAAGTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGA
CATTGTGTGTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGA
AAGGTTGTGAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGA
GGGAGGTGGATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGA
ATGAAGGGAAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGG
GATGGAGGGGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGG
GGCGAAGAAGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAG
GAGGAGGAGGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAA
GGAAAGAAGGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTC
GCTGCGAGCGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTG
GTTATGACGACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCG
TTCCAGGAGCCGGATGACGACGATGACAGTGACTGTAGCATATAGAAAAG
CTTAAACATGCTAATGTACAATTCGTAATTATTTCCATGCCCTTACAATA
AGGCGAGGAAAAACTGGAAGGAAGTTACAGTAAAAAAGCAAAGTAAAGAG
GAGAGAAACAGGAGAGAAAGCAGAATCAGAAAACGAATGCGAAAGTGTTT
TTTAAGAACCCAATCCAACTCAACAGTGACGACGAGCAAATGCAAAGCTG
TACAAACCAAAGCCAAAAACAGACAGAAGTAATGTAACGGCGCAAGTGAA
GGTGAATCACGCGATACGACGACCATGACAAGACTGAGTCACCTGTCTTC
GGTCCATCAATCTGTTTTAGTACCTCTTATGTGGCGGCTCTTGGGATGCG
GGCTCACCTTCCTGACCCTTCTATAATTTTATTTCGGGCTGTCGTGTCGG
CTACTTCAACTCTATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT back to topCoding sequence (CDS) from alignment at chr4:1009343..1011490- >NO04G03730.1 ID=NO04G03730.1|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at chr4:1009343..1011490- (Nannochloropsis oceanica) ATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTTGACCTGGT CAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAGTGCCACCG CTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCTCGACCGTC GTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGGGAGACGTT GAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCCTACGGCGG AAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCCAAGCCCCC CAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTTGAAGTCAG TCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTACCCCCCCAA TACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGGGTGCGACG GACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGATGCCTGGCA CGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGAACAGGAGC GGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGGCGAAGCAG AAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTTGATGACAA GAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATCTCAGCTCT CACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACAAGAAACGA AAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCCTTACGGCT ACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCTTGTCGAAC TCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTGGAGCAGTG GGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGATTTAAAGGG GCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTTGTTGGTAA GTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGACATTGTGT GTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGAAAGGTTGT GAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGAGGGAGGTG GATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGAATGAAGGG AAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGGGATGGAGG GGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGGGGCGAAGA AGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAGGAGGAGGA GGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAAGGAAAGAA GGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTCGCTGCGAG CGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTGGTTATGAC GACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCGTTCCAGGA GCCGGATGACGACGATGACAGTGACTGTAGCATATAG back to top
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