NO04G03730.1, NO04G03730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03730.1
Unique NameNO04G03730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr4:1009343..1011490 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1009343..1011490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03730.1 vs.
Match: EWM28762.1 (hypothetical protein Naga_100002g103 [Nannochloropsis gaditana])

HSP 1 Score: 299.7 bits (766), Expect = 1.800e-77
Identity = 251/547 (45.89%), Postives = 311/547 (56.86%), Query Frame = 0
Query:    1 MANDDDDPYLAELLDLVKDDDVKPNGSSSSSATASSSQSATNVM---------KPASTVVSSPSQYHDSDTHRETLKLLLQLSPAGANLPTAEDVQKAFRTLYPPFQAPQQLINLDDNDEKVFEVSPSTVSTGGARNERTPPI--HLDAVQEELEEHLGATDLFALRDVIRTQVDAWHAGKRALLEIVAAKEQERKNWTEEEEKKKEAAKQKQQQRKTEKEAMDVDDKSDEDKEQLNGLSQSQLSQSQASQDDV-------DIIDKKRKRGTGVVGGRATLPLRLPKAV-SDSSTSRSFLVELDERDKAQDLTGDSGAVGRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLCVLTHQHDQLKAMGGKVVSRAAGEIKGEEGGEGGGYESEHYRPSDDSENEGKKKGGGEGGRRGGWDGGGRTVANKRSSGGGGAKKGKCKGGKGGGGGGGGGGSRKSMGSSLGAGKGKKASASSKRQGPRKVSLRALKQQKKVKQQKGGGYDDDDSEDEEEDEEESFQEPDDDDDSDCSI 529
            MA DDDDPYLAELLD+   ++ K      S ATA+ + +A  +           P+ +   S   Y  SDTHRETLKLL QLSPAGA  P+A DV+KAFR LYPPFQ        +  +E V   + S+ S      +R  P    LD +QEELE HL A DLF LRDVI+ ++DAW AGKR  L  +A   +  K   EE E+      +K    K  ++ +  D +  E       L       SQASQD         D++ KKRKRG+   GGRATLPL + K+       SRS L+ELDERDKAQDLTGDSGAVGRVHV+K +G++LDLKGHQYLA L RCPT+LLVS+G+EEAKVEDVV+TLCVLTH HD+L+AMGGKV+ R      GEE  E  G E   Y         G     GEG R G      +   +KR S G G ++ K K           G +RK   SS GA K  +    +K+QGP++VSLRALK+ K  K           S+ +EE+EEESF   DDDDDSD S+
Sbjct:    1 MAEDDDDPYLAELLDISDAEEGKAFAQRGSIATAAGTSTAALLAANTTRNASNSPSPSTGKSNVTYQASDTHRETLKLLSQLSPAGAKAPSAVDVRKAFRALYPPFQT-------NGANEGVKSNAKSSTSMVATIEKRECPCVAQLDVIQEELEVHLDAVDLFDLRDVIKEEIDAWQAGKRKALAEMAGYGKSEKATCEEAEQFTGDLDRKGGTSKGSEKHVGEDVEEPEGPVSQASLLDGGAQASQASQDTANGELKSGDVL-KKRKRGSLAGGGRATLPLMVLKSARGGGGASRSLLIELDERDKAQDLTGDSGAVGRVHVKKDRGVVLDLKGHQYLAELCRCPTMLLVSLGEEEAKVEDVVDTLCVLTHHHDELEAMGGKVLRR------GEEEEESVGGEESDY---------GLMGSEGEGARAGKRMKAMKRTVSKRGSTGVGVRQAKRKSQ---------GAARKGGASSAGAPK--RTGMHAKKQGPKRVSLRALKRPKPRK----------GSDVDEEEEEESFS--DDDDDSDFSV 501          
The following BLAST results are available for this feature:
BLAST of NO04G03730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28762.11.800e-7745.89hypothetical protein Naga_100002g103 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03730NO04G03730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03730.1NO04G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03730.1.cds1NO04G03730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03730.1 ID=NO04G03730.1|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
AGGGCGGGCTCCCGGGGTTTGGTGCGGCCTGTTGCTTGCGCTTGCAGCCA
ACACACGCTCCAACAACAACCAACAGCCACTTCACACGACTGCGACCAAC
CCATATCTATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTT
GACCTGGTCAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAG
TGCCACCGCTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCT
CGACCGTCGTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGG
GAGACGTTGAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCC
TACGGCGGAAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCC
AAGCCCCCCAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTT
GAAGTCAGTCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTAC
CCCCCCAATACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGG
GTGCGACGGACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGAT
GCCTGGCACGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGA
ACAGGAGCGGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGG
CGAAGCAGAAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTT
GATGACAAGAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATC
TCAGCTCTCACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACA
AGAAACGAAAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCC
TTACGGCTACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCT
TGTCGAACTCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTG
GAGCAGTGGGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGAT
TTAAAGGGGCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTT
GTTGGTAAGTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGA
CATTGTGTGTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGA
AAGGTTGTGAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGA
GGGAGGTGGATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGA
ATGAAGGGAAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGG
GATGGAGGGGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGG
GGCGAAGAAGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAG
GAGGAGGAGGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAA
GGAAAGAAGGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTC
GCTGCGAGCGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTG
GTTATGACGACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCG
TTCCAGGAGCCGGATGACGACGATGACAGTGACTGTAGCATATAGAAAAG
CTTAAACATGCTAATGTACAATTCGTAATTATTTCCATGCCCTTACAATA
AGGCGAGGAAAAACTGGAAGGAAGTTACAGTAAAAAAGCAAAGTAAAGAG
GAGAGAAACAGGAGAGAAAGCAGAATCAGAAAACGAATGCGAAAGTGTTT
TTTAAGAACCCAATCCAACTCAACAGTGACGACGAGCAAATGCAAAGCTG
TACAAACCAAAGCCAAAAACAGACAGAAGTAATGTAACGGCGCAAGTGAA
GGTGAATCACGCGATACGACGACCATGACAAGACTGAGTCACCTGTCTTC
GGTCCATCAATCTGTTTTAGTACCTCTTATGTGGCGGCTCTTGGGATGCG
GGCTCACCTTCCTGACCCTTCTATAATTTTATTTCGGGCTGTCGTGTCGG
CTACTTCAACTCTATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
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protein sequence of NO04G03730.1

>NO04G03730.1-protein ID=NO04G03730.1-protein|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MANDDDDPYLAELLDLVKDDDVKPNGSSSSSATASSSQSATNVMKPASTV
VSSPSQYHDSDTHRETLKLLLQLSPAGANLPTAEDVQKAFRTLYPPFQAP
QQLINLDDNDEKVFEVSPSTVSTGGARNERTPPIHLDAVQEELEEHLGAT
DLFALRDVIRTQVDAWHAGKRALLEIVAAKEQERKNWTEEEEKKKEAAKQ
KQQQRKTEKEAMDVDDKSDEDKEQLNGLSQSQLSQSQASQDDVDIIDKKR
KRGTGVVGGRATLPLRLPKAVSDSSTSRSFLVELDERDKAQDLTGDSGAV
GRVHVEKKKGIILDLKGHQYLAHLRRCPTLLLVSVGDEEAKVEDVVETLC
VLTHQHDQLKAMGGKVVSRAAGEIKGEEGGEGGGYESEHYRPSDDSENEG
KKKGGGEGGRRGGWDGGGRTVANKRSSGGGGAKKGKCKGGKGGGGGGGGG
GSRKSMGSSLGAGKGKKASASSKRQGPRKVSLRALKQQKKVKQQKGGGYD
DDDSEDEEEDEEESFQEPDDDDDSDCSI*
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mRNA from alignment at chr4:1009343..1011490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03730.1 ID=NO04G03730.1|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at chr4:1009343..1011490- (Nannochloropsis oceanica)
AGGGCGGGCTCCCGGGGTTTGGTGCGGCCTGTTGCTTGCGCTTGCAGCCA ACACACGCTCCAACAACAACCAACAGCCACTTCACACGACTGCGACCAAC CCATATCTATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTT GACCTGGTCAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAG TGCCACCGCTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCT CGACCGTCGTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGG GAGACGTTGAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCC TACGGCGGAAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCC AAGCCCCCCAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTT GAAGTCAGTCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTAC CCCCCCAATACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGG GTGCGACGGACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGAT GCCTGGCACGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGA ACAGGAGCGGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGG CGAAGCAGAAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTT GATGACAAGAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATC TCAGCTCTCACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACA AGAAACGAAAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCC TTACGGCTACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCT TGTCGAACTCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTG GAGCAGTGGGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGAT TTAAAGGGGCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTT GTTGGTAAGTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGA CATTGTGTGTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGA AAGGTTGTGAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGA GGGAGGTGGATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGA ATGAAGGGAAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGG GATGGAGGGGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGG GGCGAAGAAGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAG GAGGAGGAGGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAA GGAAAGAAGGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTC GCTGCGAGCGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTG GTTATGACGACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCG TTCCAGGAGCCGGATGACGACGATGACAGTGACTGTAGCATATAGAAAAG CTTAAACATGCTAATGTACAATTCGTAATTATTTCCATGCCCTTACAATA AGGCGAGGAAAAACTGGAAGGAAGTTACAGTAAAAAAGCAAAGTAAAGAG GAGAGAAACAGGAGAGAAAGCAGAATCAGAAAACGAATGCGAAAGTGTTT TTTAAGAACCCAATCCAACTCAACAGTGACGACGAGCAAATGCAAAGCTG TACAAACCAAAGCCAAAAACAGACAGAAGTAATGTAACGGCGCAAGTGAA GGTGAATCACGCGATACGACGACCATGACAAGACTGAGTCACCTGTCTTC GGTCCATCAATCTGTTTTAGTACCTCTTATGTGGCGGCTCTTGGGATGCG GGCTCACCTTCCTGACCCTTCTATAATTTTATTTCGGGCTGTCGTGTCGG CTACTTCAACTCTATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
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Coding sequence (CDS) from alignment at chr4:1009343..1011490-

>NO04G03730.1 ID=NO04G03730.1|Name=NO04G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at chr4:1009343..1011490- (Nannochloropsis oceanica)
ATGGCGAACGACGACGATGATCCATACCTGGCTGAGCTCCTTGACCTGGT
CAAAGACGACGACGTCAAGCCCAACGGGAGCAGCAGCAGCAGTGCCACCG
CTTCCTCCTCCCAGTCGGCAACGAATGTTATGAAGCCCGCCTCGACCGTC
GTTTCTTCGCCTAGCCAATATCATGATTCGGATACACATAGGGAGACGTT
GAAACTTCTGTTGCAACTCAGCCCCGCGGGCGCCAACCTTCCTACGGCGG
AAGACGTTCAAAAAGCCTTTCGCACACTTTACCCACCCTTCCAAGCCCCC
CAACAACTTATAAATCTGGATGACAACGATGAAAAGGTTTTTGAAGTCAG
TCCTTCTACAGTATCTACAGGAGGGGCCAGGAATGAACGTACCCCCCCAA
TACACCTGGACGCAGTGCAAGAGGAGTTAGAGGAGCATCTGGGTGCGACG
GACTTGTTTGCTTTGAGGGACGTGATTCGGACACAGGTCGATGCCTGGCA
CGCGGGCAAGCGCGCACTTCTGGAGATCGTGGCGGCCAAGGAACAGGAGC
GGAAGAATTGGACAGAAGAGGAGGAGAAGAAAAAGGAAGCGGCGAAGCAG
AAGCAGCAGCAGAGGAAGACGGAGAAGGAAGCGATGGATGTTGATGACAA
GAGTGACGAGGATAAGGAGCAACTGAATGGCCTGTCACAATCTCAGCTCT
CACAGTCGCAGGCCTCTCAAGATGACGTCGACATTATCGACAAGAAACGA
AAACGAGGGACAGGTGTCGTAGGAGGGCGGGCCACTCTGCCCTTACGGCT
ACCAAAAGCTGTTAGTGATAGCAGTACCTCCCGCTCATTCCTTGTCGAAC
TCGATGAGAGAGACAAGGCTCAAGACCTAACAGGGGATAGTGGAGCAGTG
GGGAGAGTGCATGTGGAGAAAAAGAAGGGGATTATTCTAGATTTAAAGGG
GCATCAGTATTTAGCGCATTTAAGGAGGTGTCCCACGTTGTTGTTGGTAA
GTGTGGGGGATGAAGAGGCAAAAGTAGAAGATGTTGTGGAGACATTGTGT
GTGCTGACGCATCAGCATGATCAGCTAAAGGCAATGGGGGGAAAGGTTGT
GAGTAGAGCAGCAGGGGAGATCAAAGGAGAGGAAGGGGGGGAGGGAGGTG
GATATGAATCGGAGCATTACCGGCCGAGTGATGACAGTGAGAATGAAGGG
AAGAAAAAGGGAGGAGGAGAGGGAGGGAGGAGAGGAGGGTGGGATGGAGG
GGGAAGGACAGTTGCAAATAAGAGGAGCAGTGGCGGAGGCGGGGCGAAGA
AGGGAAAGTGTAAGGGAGGGAAGGGGGGAGGTGGAGGAGGAGGAGGAGGA
GGAAGTCGGAAGAGCATGGGTTCGTCATTGGGGGCCGGAAAAGGAAAGAA
GGCTTCGGCGAGCAGTAAAAGGCAGGGTCCGCGGAAGGTGTCGCTGCGAG
CGTTGAAGCAACAAAAGAAGGTGAAACAGCAGAAGGGGGGTGGTTATGAC
GACGATGATAGTGAGGACGAGGAGGAGGACGAGGAGGAGTCGTTCCAGGA
GCCGGATGACGACGATGACAGTGACTGTAGCATATAG
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Synonyms
Publications