NO04G03690, NO04G03690 (gene) Nannochloropsis oceanica

Overview
NameNO04G03690
Unique NameNO04G03690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3172
Alignment locationchr4:1001134..1004305 -

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Properties
Property NameValue
DescriptionHeat shock protein hsp20
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1001134..1004305 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: EWM28800.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 1.700e-57
Identity = 116/150 (77.33%), Postives = 132/150 (88.00%), Query Frame = 0 
Query:    1 MFGHPGHMLAFDQGGMNADMAHHLMLNPHHPH-HHSHMLMDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHSYPFAK 150
            MFGHPGH+L FDQGGMN+DMA HL+   HHP+ HH  M MDISETDRE+RI+VDLPG+KK+DIDISVDDD+LT+QTERREE SED  N+HVKERRVGK+KRSIRLP+SADTDS+RAQY DGVLRICV+KK EK QSKS+ ITD SYPF K
Sbjct:    1 MFGHPGHLLTFDQGGMNSDMARHLV---HHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK 147
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: WP_068874861.1 (MULTISPECIES: Hsp20/alpha crystallin family protein [Phenylobacterium])

HSP 1 Score: 96.3 bits (238), Expect = 8.700e-17
Identity = 44/106 (41.51%), Postives = 75/106 (70.75%), Query Frame = 0 
Query:   39 MDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHS 145
            +D+ ETD+EYR+ V+LPG  ++DI++ VDDD+LT++ E++EE   ++ + HV ERR G  +RSIRLP+S +  +++A   +GVLRI + K   ++  + V +T ++
Sbjct:   52 LDVKETDKEYRVSVELPGVAEEDIEVDVDDDLLTVRAEKKEEREVERADQHVTERRFGVLQRSIRLPQSVEAQAVKATLDNGVLRIAIPKSERQASKRRVPVTTNA 157
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: KUK50979.1 (Heat shock protein Hsp20 [candidate division TA06 bacterium 32_111] >KUK88264.1 Heat shock protein Hsp20 [candidate division TA06 bacterium 34_109])

HSP 1 Score: 92.8 bits (229), Expect = 9.600e-16
Identity = 53/118 (44.92%), Postives = 79/118 (66.95%), Query Frame = 0 
Query:   25 MLNPHHPHHHSHMLMDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITD 143
            ML P++  + +   MDISETD+E+ + V+LPG KK+DI +S+D++VLTI+ ER+ E  E    +H  ER  GK  RS+ LPK  D D+I+A + DG+L I +  K EK + K++ I+D
Sbjct:   33 MLQPYYESNWTPS-MDISETDKEFFVTVELPGLKKEDITLSIDNNVLTIEGERKSEKEEKGKTFHRIERSYGKFYRSVTLPKKVDEDNIKASFKDGLLNITI-PKVEKEKVKNIEISD 148
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: EWM22022.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-15
Identity = 42/103 (40.78%), Postives = 69/103 (66.99%), Query Frame = 0 
Query:   39 MDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIIT 142
            +D+ E + E+++ +D PG KK+D D++ D++VL +  ER+EE  E+   +H+ ERR G S RS+RLP++A+ D I A+Y  GVL+I V K  E    K++ ++
Sbjct:   57 LDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESETRKTIRVS 159
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: WP_015888004.1 (Hsp20/alpha crystallin family protein [Sinorhizobium fredii] >YP_002824136.1 HSP16 heat shock protein (plasmid) [Sinorhizobium fredii NGR234] >ACP23383.1 heat shock protein 16 (plasmid) [Sinorhizobium fredii NGR234])

HSP 1 Score: 91.3 bits (225), Expect = 2.800e-15
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:   39 MDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSV 139
            +D+SET+ E RI  +LPG K +D+D+S++DD LTI+ E++ E  +++ NYH  ER  G  +RS+RLP S D D IRA + DGVL + + K  E+ + + +
Sbjct:   60 IDVSETENEVRICAELPGVKDEDVDVSLNDDTLTIRAEKKFERKDEKENYHFMERSYGTFQRSLRLPYSVDADKIRADFADGVLTVTLPKGPEQEKRRKI 159
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: WP_067562008.1 (Hsp20/alpha crystallin family protein [Halofilum ochraceum])

HSP 1 Score: 90.1 bits (222), Expect = 6.200e-15
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:   40 DISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKS 138
            D+SETD  Y ++VDLPG KKDD+ +   D +LTI  ERR+E  +++  Y++ ER  G  +RS R+P+S D DSI A++ DGVL + +  KTE+S+  S
Sbjct:   87 DLSETDEAYELQVDLPGMKKDDVAVDYSDGILTISGERRDEREDERKGYYLSERSYGAYRRSFRVPESVDHDSIAARFSDGVLTVKL-PKTEESRETS 183
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: WP_069457627.1 (Hsp20/alpha crystallin family protein [Ensifer alkalisoli] >ODR92110.1 type III effector protein [Ensifer alkalisoli])

HSP 1 Score: 89.0 bits (219), Expect = 1.400e-14
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:   39 MDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSV 139
            +D+SET+ + RI  +LPG +++DID+S++DD LTI+ E++ E  +++ NYH  ER  G  +RS+RLP S D D + A + DGVL + + K  E+ +S+ +
Sbjct:   60 IDVSETENQVRICAELPGVREEDIDVSLNDDTLTIRGEKKFERKDEKENYHFMERSYGTFQRSLRLPYSVDPDKVEADFADGVLTVTLPKGAEQERSRKI 159
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: WP_012520263.1 (Hsp20/alpha crystallin family protein [Phenylobacterium zucineum] >ACG79963.1 heat shock protein Hsp20 (plasmid) [Phenylobacterium zucineum HLK1])

HSP 1 Score: 88.6 bits (218), Expect = 1.800e-14
Identity = 43/104 (41.35%), Postives = 75/104 (72.12%), Query Frame = 0 
Query:   39 MDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERR--EESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVII 141
            MD++ETD+E R+ V+LPG  + DID+++D+D+LTI+ E++  +E  +++ NYH  ER  G+ +RS+RLP  A+ D ++A Y +GVL + V K  ++++S+ + I
Sbjct:   98 MDVAETDKEVRVCVELPGVDEKDIDVTLDNDLLTIRGEKKFEQEKGDEKTNYHFVERGYGRFQRSLRLPFQANPDEVKASYNNGVLTVTVPKSAQQARSRRIQI 201
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: WP_071017625.1 (Hsp20/alpha crystallin family protein [Ensifer sp. LCM 4579] >OHV80927.1 type III effector protein [Ensifer sp. LCM 4579])

HSP 1 Score: 88.6 bits (218), Expect = 1.800e-14
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:   39 MDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSV 139
            +D+SET+ + RI  +LPG +++DID+S++DD LTI+ E++ E  +D+ NYH  ER  G  +RS+RLP S D D + A + DGVL + + K  E  +S  +
Sbjct:   60 IDVSETENQVRICAELPGVREEDIDVSLNDDTLTIRGEKKFERKDDKENYHFMERSYGTFQRSLRLPYSVDPDKVEADFADGVLTVTLPKGAEPERSXKI 159
[Close]
BLAST of NO04G03690 vs. NCBI_GenBank
Match: WP_034855332.1 (Hsp20/alpha crystallin family protein [Ensifer sojae] >ASY66971.1 Small heat shock protein (plasmid) [Ensifer sojae CCBAU 05684])

HSP 1 Score: 88.2 bits (217), Expect = 2.400e-14
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:   39 MDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSV 139
            +D+SET+ E RI  +LPG K++DID+S++ D+LTI+ E++ E  +D+ NYH  ER  G  +RS+RLP S D D + A + DGVL + + K  ++ +S+ +
Sbjct:   60 IDVSETENEVRICAELPGVKEEDIDVSLNGDMLTIRGEKKFERKDDKENYHFMERSYGTFQRSLRLPYSVDPDKVEADFGDGVLTVTLPKGPDEERSRKI 159
The following BLAST results are available for this feature:
BLAST of NO04G03690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28800.11.700e-5777.33heat shock protein hsp20 [Nannochloropsis gaditana... [more]
WP_068874861.18.700e-1741.51MULTISPECIES: Hsp20/alpha crystallin family protei... [more]
KUK50979.19.600e-1644.92Heat shock protein Hsp20 [candidate division TA06 ... [more]
EWM22022.11.600e-1540.78heat shock protein hsp20 [Nannochloropsis gaditana... [more]
WP_015888004.12.800e-1544.00Hsp20/alpha crystallin family protein [Sinorhizobi... [more]
WP_067562008.16.200e-1546.94Hsp20/alpha crystallin family protein [Halofilum o... [more]
WP_069457627.11.400e-1442.00Hsp20/alpha crystallin family protein [Ensifer alk... [more]
WP_012520263.11.800e-1441.35Hsp20/alpha crystallin family protein [Phenylobact... [more]
WP_071017625.11.800e-1443.00Hsp20/alpha crystallin family protein [Ensifer sp.... [more]
WP_034855332.12.400e-1443.00Hsp20/alpha crystallin family protein [Ensifer soj... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009434NSK009434Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03690.1NO04G03690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579259gene_2151Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g99gene1834Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03690.1NO04G03690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03690 ID=NO04G03690|Name=NO04G03690|organism=Nannochloropsis oceanica|type=gene|length=3172bp
CCTTCCCACCCTCCCTCCCTGTGCTCACGCAGTCGACGCCTCCTTTATCT
CGAGCACCATCTTGGCATACGTTTCTTTCTCCTCCTTTCCTGCATCTTTA
TTGCTCACCAACACACAACTTGTTGGTCGCTTCACTGCCGCTGCACTGCC
CAGGTCATGCTTGGACGGTACGTAAATATAGGGGGTGTCTTTCTCCTCAC
ACAAGACTGCCAGGTGGCTTATGACGTCGACCGGGTAGATGTCCCCCGCG
ATGAGACAGATGCCTTTCTCGCCCTTCTTGAGTCCTTTTACCACTTCCTT
GACGCCGCGTTTAACGTTCTTGGCGGACGAGGCTTTTTTTACGAGCTTGT
AAAGTTTCTTGGTCAATTTCTTACCGGCCAGAGGCTTGGAGATGATACTG
ACAGCTTTTAACCGGTCTTCGTAGGATTTGGCGCTGTTGGTTAGGTGGAG
GGATGAGGGATGGATGGTGGCGTATGTGAGAGATGGTGAGCGCGGGAAGG
GAGAGTTAGGAGGGGAAACGTTATCAGCACTATGTCTTCGTGGGTCATGG
CTCTGCTTTGTTTTGGGGAGTGGATAGGGGAAGAAAGGTAAGCGGAGTGG
GATTCACAGAGTTCGCGTGCCAATGATATTGGCCTTGAATAGGTCACCAT
TTATTCATGCAAAGACATGATTGCATTCCAAGAAGGGCGATTGTGTGAAT
GAAATGAGTCAAGGGCGTTGCTGATAGGAGAGGTTGTACTTTGAGACGAC
GACTGGGCGACATTTTGTCGAAAGCATGCTTGTGCTCAAGTGATTTATCC
TGATCTCTGAGGAACGCAAAGCCTTGTCATTATAGTGGCTCTGAATTTTG
GGGAAAACGTGGCACACGGCGGCCGAGTTAAGAGGCCGAGGCAGGGAGTA
CCAAGTGCGGGTTGGTGTGAGCACAGGCCAAACTCTGCTCACAGCCTATA
ATTCTTGCTGCGCCGCGCCAGACTCTCAAACAGGGTATGCTAAAGGCGAG
GCGAACAAGAGCCCACAACGACAGGGCATAGAGAAGGTGGATGCATTGCG
AGAAGGCAGGGTATACTTGGATGGGTGGGGAGGCTGTGCAAGAACAAACG
TACCCTTTCTTCGTGCCCTCGTCGTCGCTCATGTTCCCGGTGCGACTGCA
GACTCTTCTGCTGCTCTTGAGCTGTAAGATTGTGGTGAAAGGGTGACATG
GCAAGTAAGTGGCAAAAGAAAAAAAATAGCTGGGGTCCATTGATTGATAT
CCGAGATGTGCCGAGTTTTTCTCCCGTCGGCATGCGTCGTGTGATGGATG
GTATACCTCAAGGTAAACCTTGTCCGGAGAGTCTCTTTACTGAACAAGGT
TTACAAAAAGCGGTCAATGATTGCTTGAGTCAATTTTCAGATTCATTTGT
AGCTAAAATGCTGCCCCCCCCCCCACCCAGCATAAAAGTGACTTCGTGTG
AGGTAACAGAACATACAGATGCCCATATGGAAGGTGAGGGAACTTACTTT
ACTTTTCGGGAACTTCTAGACGCCGCAAGCATCGGCACAAAATTTACTGA
ATCCCATACACACACCAGTAAATCGAAATCCTGTAACCCCCATTGATGCT
TGGCGCCGGCCTGTTGCAGGCTTCGTGCGTGCTGCACGAAATTGCCATCC
TTCCTCATCGCACTTCCCACATCTCCATCTGCTTTGCAGCCTGATGTGCT
TCTCTCTCTTGCGCAAGAGGCGCACCACAGCAAAGGCAGAGTGCATAGCT
TGGCCACAACATCGCAGTGGCCCACCAGTGTCCCTTTCGAGTATTGCAGG
GGAGAGATTTGCCGTGCCGTGGCTATCACATGGGACGAAACAAATTGGAC
AGAACATTTGAGGTCCGCTTCCCAGCTGGCGAATCGCATTATCCTGCAAG
CACCTGGCCCTATTGCGGAAAGGCGCATCAAGAGCCTCTCTCGCACCATT
AAATGCATCACTGATGTACTTGGCTATTATCCGTGGATTTGCTTACCCTT
TCCACCTTATCACCATCTCTACCCACCAAACAGAAAACATTACATAAATG
TTTGGGCATCCTGGCCATATGCTCGCGTTCGACCAAGGTGGGATGAATGC
TGACATGGCCCATCATCTGATGCTTAATCCCCACCATCCGCACCACCACT
CGCACATGTTGATGGATATCAGgtacgaggattgagggagaaaattgtgg
aagaagaaaatcggaggattaaagaagagtgaagtgttttatgtacatgt
attcttggcagcgctttataaggacttctttcttctcacactccctctca
tcctcctcctccctccttctctcccaaccttttgctcacgacacagTGAG
ACCGACCGTGAGTACCGCATCGAGGTTGACCTCCCCGGGAACAAGAAAGA
CGACATCGATATCAGCGTGGACGACGACGTGCTGACCATTCAAACAGAGC
GTCGGGAGGAGTCCAGCGAGGACCAACTTAACTATCATGTGAAAGAACGA
CGGGTGGGCAAGAGTAAACGCTCCATTCGTCTGCCCAAGAGCGCTGATAC
TGATTCGATTCGAGCGCAGTACATGGATGGGGTATTGCGAATCTGTGTGG
ACAAGAAGACGGAGAAGTCCCAGAGCAAAAGCGTTATAATTACTGACCAT
TCTTATCCTTTTGCGAAATGAGAAGGCCGCCCACCCCCGGAGGGGGCGGA
GGTGAGGAGCCGGAGATGGAGGAAGAAGGGTAGGACAAGTCGGCTACATC
GGGAAAGCGGAAGAGAGAGCGGAGTAAAGCGAGGTGGGGGTTAAGAAGAC
GTTGAGGTTTGAGACAGATGAAGAAAATGTGGTAGATAGAGAGCAAAGAC
GTGAATGAGAGGCAACTTCCTGAGCAGCCCAATTAGTTGCTACACTCGCA
AGGAGTAGGGGAATATGTGTAGAGACAAAGGGATAGAGATGCAGTGGGTG
GAGATTAAAGGGAATAGGACCCCGAAGAGAATAGCAAATGATGCGAGTGT
CCCCTGCTTAGGATCGAATGTCAAAGAGGTATTGGCGTGAGGAGGGAGGG
GAAACACCAAGTCTTAGAGGAGCGAGCTGCGCTGGCAGTCACATCAGGAT
AGACGAAGTCATGGGACTCAATAAGAACAAAAGCGGCGGACGACTGTCCC
TGACAACCAACTGTTACACTCA
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protein sequence of NO04G03690.1

>NO04G03690.1-protein ID=NO04G03690.1-protein|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MFGHPGHMLAFDQGGMNADMAHHLMLNPHHPHHHSHMLMDISETDREYRI
EVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKR
SIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHSYPFAK*
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Synonyms
Publications