NO04G03690.1, NO04G03690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03690.1
Unique NameNO04G03690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2998
Alignment locationchr4:1001134..1004305 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1001134..1004305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03690.1 vs.
Match: EWM28800.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 1.700e-57
Identity = 116/150 (77.33%), Postives = 132/150 (88.00%), Query Frame = 0
Query:    1 MFGHPGHMLAFDQGGMNADMAHHLMLNPHHPH-HHSHMLMDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHSYPFAK 150
            MFGHPGH+L FDQGGMN+DMA HL+   HHP+ HH  M MDISETDRE+RI+VDLPG+KK+DIDISVDDD+LT+QTERREE SED  N+HVKERRVGK+KRSIRLP+SADTDS+RAQY DGVLRICV+KK EK QSKS+ ITD SYPF K
Sbjct:    1 MFGHPGHLLTFDQGGMNSDMARHLV---HHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK 147          
The following BLAST results are available for this feature:
BLAST of NO04G03690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28800.11.700e-5777.33heat shock protein hsp20 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03690NO04G03690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03690.1NO04G03690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03690.1.cds1NO04G03690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03690.1.cds2NO04G03690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03690.1 ID=NO04G03690.1|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2998bp
CCTTCCCACCCTCCCTCCCTGTGCTCACGCAGTCGACGCCTCCTTTATCT
CGAGCACCATCTTGGCATACGTTTCTTTCTCCTCCTTTCCTGCATCTTTA
TTGCTCACCAACACACAACTTGTTGGTCGCTTCACTGCCGCTGCACTGCC
CAGGTCATGCTTGGACGGTACGTAAATATAGGGGGTGTCTTTCTCCTCAC
ACAAGACTGCCAGGTGGCTTATGACGTCGACCGGGTAGATGTCCCCCGCG
ATGAGACAGATGCCTTTCTCGCCCTTCTTGAGTCCTTTTACCACTTCCTT
GACGCCGCGTTTAACGTTCTTGGCGGACGAGGCTTTTTTTACGAGCTTGT
AAAGTTTCTTGGTCAATTTCTTACCGGCCAGAGGCTTGGAGATGATACTG
ACAGCTTTTAACCGGTCTTCGTAGGATTTGGCGCTGTTGGTTAGGTGGAG
GGATGAGGGATGGATGGTGGCGTATGTGAGAGATGGTGAGCGCGGGAAGG
GAGAGTTAGGAGGGGAAACGTTATCAGCACTATGTCTTCGTGGGTCATGG
CTCTGCTTTGTTTTGGGGAGTGGATAGGGGAAGAAAGGTAAGCGGAGTGG
GATTCACAGAGTTCGCGTGCCAATGATATTGGCCTTGAATAGGTCACCAT
TTATTCATGCAAAGACATGATTGCATTCCAAGAAGGGCGATTGTGTGAAT
GAAATGAGTCAAGGGCGTTGCTGATAGGAGAGGTTGTACTTTGAGACGAC
GACTGGGCGACATTTTGTCGAAAGCATGCTTGTGCTCAAGTGATTTATCC
TGATCTCTGAGGAACGCAAAGCCTTGTCATTATAGTGGCTCTGAATTTTG
GGGAAAACGTGGCACACGGCGGCCGAGTTAAGAGGCCGAGGCAGGGAGTA
CCAAGTGCGGGTTGGTGTGAGCACAGGCCAAACTCTGCTCACAGCCTATA
ATTCTTGCTGCGCCGCGCCAGACTCTCAAACAGGGTATGCTAAAGGCGAG
GCGAACAAGAGCCCACAACGACAGGGCATAGAGAAGGTGGATGCATTGCG
AGAAGGCAGGGTATACTTGGATGGGTGGGGAGGCTGTGCAAGAACAAACG
TACCCTTTCTTCGTGCCCTCGTCGTCGCTCATGTTCCCGGTGCGACTGCA
GACTCTTCTGCTGCTCTTGAGCTGTAAGATTGTGGTGAAAGGGTGACATG
GCAAGTAAGTGGCAAAAGAAAAAAAATAGCTGGGGTCCATTGATTGATAT
CCGAGATGTGCCGAGTTTTTCTCCCGTCGGCATGCGTCGTGTGATGGATG
GTATACCTCAAGGTAAACCTTGTCCGGAGAGTCTCTTTACTGAACAAGGT
TTACAAAAAGCGGTCAATGATTGCTTGAGTCAATTTTCAGATTCATTTGT
AGCTAAAATGCTGCCCCCCCCCCCACCCAGCATAAAAGTGACTTCGTGTG
AGGTAACAGAACATACAGATGCCCATATGGAAGGTGAGGGAACTTACTTT
ACTTTTCGGGAACTTCTAGACGCCGCAAGCATCGGCACAAAATTTACTGA
ATCCCATACACACACCAGTAAATCGAAATCCTGTAACCCCCATTGATGCT
TGGCGCCGGCCTGTTGCAGGCTTCGTGCGTGCTGCACGAAATTGCCATCC
TTCCTCATCGCACTTCCCACATCTCCATCTGCTTTGCAGCCTGATGTGCT
TCTCTCTCTTGCGCAAGAGGCGCACCACAGCAAAGGCAGAGTGCATAGCT
TGGCCACAACATCGCAGTGGCCCACCAGTGTCCCTTTCGAGTATTGCAGG
GGAGAGATTTGCCGTGCCGTGGCTATCACATGGGACGAAACAAATTGGAC
AGAACATTTGAGGTCCGCTTCCCAGCTGGCGAATCGCATTATCCTGCAAG
CACCTGGCCCTATTGCGGAAAGGCGCATCAAGAGCCTCTCTCGCACCATT
AAATGCATCACTGATGTACTTGGCTATTATCCGTGGATTTGCTTACCCTT
TCCACCTTATCACCATCTCTACCCACCAAACAGAAAACATTACATAAATG
TTTGGGCATCCTGGCCATATGCTCGCGTTCGACCAAGGTGGGATGAATGC
TGACATGGCCCATCATCTGATGCTTAATCCCCACCATCCGCACCACCACT
CGCACATGTTGATGGATATCAGTGAGACCGACCGTGAGTACCGCATCGAG
GTTGACCTCCCCGGGAACAAGAAAGACGACATCGATATCAGCGTGGACGA
CGACGTGCTGACCATTCAAACAGAGCGTCGGGAGGAGTCCAGCGAGGACC
AACTTAACTATCATGTGAAAGAACGACGGGTGGGCAAGAGTAAACGCTCC
ATTCGTCTGCCCAAGAGCGCTGATACTGATTCGATTCGAGCGCAGTACAT
GGATGGGGTATTGCGAATCTGTGTGGACAAGAAGACGGAGAAGTCCCAGA
GCAAAAGCGTTATAATTACTGACCATTCTTATCCTTTTGCGAAATGAGAA
GGCCGCCCACCCCCGGAGGGGGCGGAGGTGAGGAGCCGGAGATGGAGGAA
GAAGGGTAGGACAAGTCGGCTACATCGGGAAAGCGGAAGAGAGAGCGGAG
TAAAGCGAGGTGGGGGTTAAGAAGACGTTGAGGTTTGAGACAGATGAAGA
AAATGTGGTAGATAGAGAGCAAAGACGTGAATGAGAGGCAACTTCCTGAG
CAGCCCAATTAGTTGCTACACTCGCAAGGAGTAGGGGAATATGTGTAGAG
ACAAAGGGATAGAGATGCAGTGGGTGGAGATTAAAGGGAATAGGACCCCG
AAGAGAATAGCAAATGATGCGAGTGTCCCCTGCTTAGGATCGAATGTCAA
AGAGGTATTGGCGTGAGGAGGGAGGGGAAACACCAAGTCTTAGAGGAGCG
AGCTGCGCTGGCAGTCACATCAGGATAGACGAAGTCATGGGACTCAATAA
GAACAAAAGCGGCGGACGACTGTCCCTGACAACCAACTGTTACACTCA
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protein sequence of NO04G03690.1

>NO04G03690.1-protein ID=NO04G03690.1-protein|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MFGHPGHMLAFDQGGMNADMAHHLMLNPHHPHHHSHMLMDISETDREYRI
EVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKR
SIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHSYPFAK*
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mRNA from alignment at chr4:1001134..1004305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03690.1 ID=NO04G03690.1|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=3172bp|location=Sequence derived from alignment at chr4:1001134..1004305- (Nannochloropsis oceanica)
CCTTCCCACCCTCCCTCCCTGTGCTCACGCAGTCGACGCCTCCTTTATCT CGAGCACCATCTTGGCATACGTTTCTTTCTCCTCCTTTCCTGCATCTTTA TTGCTCACCAACACACAACTTGTTGGTCGCTTCACTGCCGCTGCACTGCC CAGGTCATGCTTGGACGGTACGTAAATATAGGGGGTGTCTTTCTCCTCAC ACAAGACTGCCAGGTGGCTTATGACGTCGACCGGGTAGATGTCCCCCGCG ATGAGACAGATGCCTTTCTCGCCCTTCTTGAGTCCTTTTACCACTTCCTT GACGCCGCGTTTAACGTTCTTGGCGGACGAGGCTTTTTTTACGAGCTTGT AAAGTTTCTTGGTCAATTTCTTACCGGCCAGAGGCTTGGAGATGATACTG ACAGCTTTTAACCGGTCTTCGTAGGATTTGGCGCTGTTGGTTAGGTGGAG GGATGAGGGATGGATGGTGGCGTATGTGAGAGATGGTGAGCGCGGGAAGG GAGAGTTAGGAGGGGAAACGTTATCAGCACTATGTCTTCGTGGGTCATGG CTCTGCTTTGTTTTGGGGAGTGGATAGGGGAAGAAAGGTAAGCGGAGTGG GATTCACAGAGTTCGCGTGCCAATGATATTGGCCTTGAATAGGTCACCAT TTATTCATGCAAAGACATGATTGCATTCCAAGAAGGGCGATTGTGTGAAT GAAATGAGTCAAGGGCGTTGCTGATAGGAGAGGTTGTACTTTGAGACGAC GACTGGGCGACATTTTGTCGAAAGCATGCTTGTGCTCAAGTGATTTATCC TGATCTCTGAGGAACGCAAAGCCTTGTCATTATAGTGGCTCTGAATTTTG GGGAAAACGTGGCACACGGCGGCCGAGTTAAGAGGCCGAGGCAGGGAGTA CCAAGTGCGGGTTGGTGTGAGCACAGGCCAAACTCTGCTCACAGCCTATA ATTCTTGCTGCGCCGCGCCAGACTCTCAAACAGGGTATGCTAAAGGCGAG GCGAACAAGAGCCCACAACGACAGGGCATAGAGAAGGTGGATGCATTGCG AGAAGGCAGGGTATACTTGGATGGGTGGGGAGGCTGTGCAAGAACAAACG TACCCTTTCTTCGTGCCCTCGTCGTCGCTCATGTTCCCGGTGCGACTGCA GACTCTTCTGCTGCTCTTGAGCTGTAAGATTGTGGTGAAAGGGTGACATG GCAAGTAAGTGGCAAAAGAAAAAAAATAGCTGGGGTCCATTGATTGATAT CCGAGATGTGCCGAGTTTTTCTCCCGTCGGCATGCGTCGTGTGATGGATG GTATACCTCAAGGTAAACCTTGTCCGGAGAGTCTCTTTACTGAACAAGGT TTACAAAAAGCGGTCAATGATTGCTTGAGTCAATTTTCAGATTCATTTGT AGCTAAAATGCTGCCCCCCCCCCCACCCAGCATAAAAGTGACTTCGTGTG AGGTAACAGAACATACAGATGCCCATATGGAAGGTGAGGGAACTTACTTT ACTTTTCGGGAACTTCTAGACGCCGCAAGCATCGGCACAAAATTTACTGA ATCCCATACACACACCAGTAAATCGAAATCCTGTAACCCCCATTGATGCT TGGCGCCGGCCTGTTGCAGGCTTCGTGCGTGCTGCACGAAATTGCCATCC TTCCTCATCGCACTTCCCACATCTCCATCTGCTTTGCAGCCTGATGTGCT TCTCTCTCTTGCGCAAGAGGCGCACCACAGCAAAGGCAGAGTGCATAGCT TGGCCACAACATCGCAGTGGCCCACCAGTGTCCCTTTCGAGTATTGCAGG GGAGAGATTTGCCGTGCCGTGGCTATCACATGGGACGAAACAAATTGGAC AGAACATTTGAGGTCCGCTTCCCAGCTGGCGAATCGCATTATCCTGCAAG CACCTGGCCCTATTGCGGAAAGGCGCATCAAGAGCCTCTCTCGCACCATT AAATGCATCACTGATGTACTTGGCTATTATCCGTGGATTTGCTTACCCTT TCCACCTTATCACCATCTCTACCCACCAAACAGAAAACATTACATAAATG TTTGGGCATCCTGGCCATATGCTCGCGTTCGACCAAGGTGGGATGAATGC TGACATGGCCCATCATCTGATGCTTAATCCCCACCATCCGCACCACCACT CGCACATGTTGATGGATATCAGGTACGAGGATTGAGGGAGAAAATTGTGG AAGAAGAAAATCGGAGGATTAAAGAAGAGTGAAGTGTTTTATGTACATGT ATTCTTGGCAGCGCTTTATAAGGACTTCTTTCTTCTCACACTCCCTCTCA TCCTCCTCCTCCCTCCTTCTCTCCCAACCTTTTGCTCACGACACAGTGAG ACCGACCGTGAGTACCGCATCGAGGTTGACCTCCCCGGGAACAAGAAAGA CGACATCGATATCAGCGTGGACGACGACGTGCTGACCATTCAAACAGAGC GTCGGGAGGAGTCCAGCGAGGACCAACTTAACTATCATGTGAAAGAACGA CGGGTGGGCAAGAGTAAACGCTCCATTCGTCTGCCCAAGAGCGCTGATAC TGATTCGATTCGAGCGCAGTACATGGATGGGGTATTGCGAATCTGTGTGG ACAAGAAGACGGAGAAGTCCCAGAGCAAAAGCGTTATAATTACTGACCAT TCTTATCCTTTTGCGAAATGAGAAGGCCGCCCACCCCCGGAGGGGGCGGA GGTGAGGAGCCGGAGATGGAGGAAGAAGGGTAGGACAAGTCGGCTACATC GGGAAAGCGGAAGAGAGAGCGGAGTAAAGCGAGGTGGGGGTTAAGAAGAC GTTGAGGTTTGAGACAGATGAAGAAAATGTGGTAGATAGAGAGCAAAGAC GTGAATGAGAGGCAACTTCCTGAGCAGCCCAATTAGTTGCTACACTCGCA AGGAGTAGGGGAATATGTGTAGAGACAAAGGGATAGAGATGCAGTGGGTG GAGATTAAAGGGAATAGGACCCCGAAGAGAATAGCAAATGATGCGAGTGT CCCCTGCTTAGGATCGAATGTCAAAGAGGTATTGGCGTGAGGAGGGAGGG GAAACACCAAGTCTTAGAGGAGCGAGCTGCGCTGGCAGTCACATCAGGAT AGACGAAGTCATGGGACTCAATAAGAACAAAAGCGGCGGACGACTGTCCC TGACAACCAACTGTTACACTCA
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Coding sequence (CDS) from alignment at chr4:1001134..1004305-

>NO04G03690.1 ID=NO04G03690.1|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr4:1001134..1004305- (Nannochloropsis oceanica)
ATGTTTGGGCATCCTGGCCATATGCTCGCGTTCGACCAAGGTGGGATGAA
TGCTGACATGGCCCATCATCTGATGCTTAATCCCCACCATCCGCACCACC
ACTCGCACATGTTGATGGATATCAGTGAGACCGACCGTGAGTACCGCATC
GAGGTTGACCTCCCCGGGAACAAGAAAGACGACATCGATATCAGCGTGGA
CGACGACGTGCTGACCATTCAAACAGAGCGTCGGGAGGAGTCCAGCGAGG
ACCAACTTAACTATCATGTGAAAGAACGACGGGTGGGCAAGAGTAAACGC
TCCATTCGTCTGCCCAAGAGCGCTGATACTGATTCGATTCGAGCGCAGTA
CATGGATGGGGTATTGCGAATCTGTGTGGACAAGAAGACGGAGAAGTCCC
AGAGCAAAAGCGTTATAATTACTGACCATTCTTATCCTTTTGCGAAATGA
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Synonyms
Publications