NO04G03670, NO04G03670 (gene) Nannochloropsis oceanica

Overview
NameNO04G03670
Unique NameNO04G03670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr4:994518..995681 -

Link to JBrowse

Properties
Property NameValue
DescriptionApaG domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:994518..995681 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036767ApaG_sf
IPR007474ApaG_domain
Homology
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BLAST of NO04G03670 vs. NCBI_GenBank
Match: EWM28767.1 (ApaG domain protein [Nannochloropsis gaditana])

HSP 1 Score: 590.5 bits (1521), Expect = 3.800e-165
Identity = 304/380 (80.00%), Postives = 330/380 (86.84%), Query Frame = 0 
Query:    8 SQLALLLVFWGLSSTQAFVSPAIWSRIHSSLRLFGRNPVVAEQQLAATRSSASTPFWRALTFGERMTALRATAPMSFGDFGGSHGSEELTFAEMREQLGTLESQLAGAMELGRYEEAKELVNEITTMKNFLEKQINGGENGG-GMLNTKAPPPASRNPFFDAFGLGGASPAAAAMMAPVQPPAFAPQPRRSNRPGLGAFGSAVGNRRRPAPSTGKSSGGLVN--REGWAGKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGASKPQDNLYQFQCNIRITNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPTVGPGSVYMYMSEFGITCVPEDKKYLGRIEGHFNVLVKEENAVVKVPIAPFWLELPGDTL 385
            SQL ++ V     ST AFVSPAIWSRI SSLRL G+  V AEQ       ++++PF RALTFGERMTALRATAPMSFGDFGG    +EL+FAE+REQLG LES+LAGAME GRY+EAK+LVNEITTMK+FLEKQ+NG + G  G+ N K    ASRNPFFDAFGLGGASP AA MMAPVQP + APQPRRS+RPGLGAFGS VG+RRRP+ S  KSSGGLVN  REGW GKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGAS+PQDNLYQFQCN+R+TNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQP VGPGSVYMYMSEFGITCVPED+KYLGRIEGHFNV VK+ENAVVKVPIAPFWLELPGDTL
Sbjct:   72 SQLVVVSVTLLFGSTNAFVSPAIWSRIQSSLRLHGQR-VEAEQPPVLGSVASTSPFRRALTFGERMTALRATAPMSFGDFGGQQNGDELSFAEVREQLGALESRLAGAMEFGRYDEAKQLVNEITTMKDFLEKQLNGRQVGSDGVPNGKGSSRASRNPFFDAFGLGGASPMAATMMAPVQPSSSAPQPRRSSRPGLGAFGSVVGSRRRPSGSASKSSGGLVNGPREGWVGKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWLELPGDTL 450
The following BLAST results are available for this feature:
BLAST of NO04G03670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28767.13.800e-16580.00ApaG domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009437NSK009437Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03670.1NO04G03670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579254gene_2149Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g97gene1836Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03670.1NO04G03670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03670 ID=NO04G03670|Name=NO04G03670|organism=Nannochloropsis oceanica|type=gene|length=1164bp
ATGTCCCGCACGTCAATCACCAGCCAATTGGCGCTCCTTCTCGTTTTTTG
GGGCCTCTCTTCGACCCAAGCCTTTGTCAGCCCTGCCATTTGGTCCCGGA
TTCACAGCAGTCTGCGCCTCTTTGGCCGCAACCCTGTAGTAGCAGAACAA
CAGCTTGCCGCCACCAGGAGTAGTGCCTCTACACCGTTTTGGCGGGCGCT
GACGTTTGGAGAGCGCATGACAGCACTTCGGGCAACAGCACCGATGAGCT
TTGGGGATTTCGGGGGTTCACATGGGAGCGAAGAGCTGACCTTCGCAGAG
ATGCGAGAGCAACTGGGCACGCTCGAGTCGCAGTTAGCGGGGGCGATGGA
GTTGGGACGGTACGAGGAGGCTAAGGAATTGGTTAATGAGATCACCACCA
TGAAGAACTTTTTGGAGAAGCAGATTAATGGTGGGGAGAACGGCGGTGGC
ATGTTGAACACGAAGGCGCCCCCCCCTGCATCCCGCAACCCTTTCTTCGA
CGCCTTCGGCTTGGGCGGGGCCTCTCCCGCGGCTGCAGCCATGATGGCTC
CTGTCCAGCCCCCTGCCTTTGCACCGCAGCCTCGCCGTAGCAATCGACCT
GGCTTGGGTGCTTTTGGAAGCGCTGTTGGCAACCGTCGCCGACCTGCACC
CAGCACGGGCAAGAGCTCGGGGGGGCTGGTAAACCGTGAGGGGTGGGCAG
GGAAGGGAAAAAGCGGGGATTTACCAATGGAAGCTGTTAGGAAGCGTCAT
TCTGACATCACCGCCTACGGCATCCGCGTCGAGGTGTTTTGTTTTTTCCA
ACCAGGGGCAAGCAAGCCCCAGGACAACCTGTACCAGTTTCAGTGCAACA
TCCGCATTACCAACACCAACCCGGGGGACGTGCAGCTTCTTTCTCGCGAA
CTCAAGATCTTTAAGGCTGACGGCTCGCCTCCTGAGTACGGGCCTGCGTC
GCAGCAGTTGGAGAGTCAGCCGACGGTGGGTCCAGGATCAGTTTATATGT
ACATGAGCGAGTTTGGGATTACGTGTGTGCCGGAGGATAAGAAGTATTTG
GGGCGGATCGAGGGTCATTTTAATGTACTGGTCAAAGAGGAGAATGCAGT
GGTTAAGGTGCCGATTGCCCCGTTCTGGCTGGAGTTGCCCGGAGATACGT
TGGTGTTGGCTTAA
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protein sequence of NO04G03670.1

>NO04G03670.1-protein ID=NO04G03670.1-protein|Name=NO04G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSRTSITSQLALLLVFWGLSSTQAFVSPAIWSRIHSSLRLFGRNPVVAEQ
QLAATRSSASTPFWRALTFGERMTALRATAPMSFGDFGGSHGSEELTFAE
MREQLGTLESQLAGAMELGRYEEAKELVNEITTMKNFLEKQINGGENGGG
MLNTKAPPPASRNPFFDAFGLGGASPAAAAMMAPVQPPAFAPQPRRSNRP
GLGAFGSAVGNRRRPAPSTGKSSGGLVNREGWAGKGKSGDLPMEAVRKRH
SDITAYGIRVEVFCFFQPGASKPQDNLYQFQCNIRITNTNPGDVQLLSRE
LKIFKADGSPPEYGPASQQLESQPTVGPGSVYMYMSEFGITCVPEDKKYL
GRIEGHFNVLVKEENAVVKVPIAPFWLELPGDTLVLA*
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Synonyms
Publications