NO04G03670.1, NO04G03670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03670.1
Unique NameNO04G03670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr4:994518..995681 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:994518..995681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03670.1 vs.
Match: EWM28767.1 (ApaG domain protein [Nannochloropsis gaditana])

HSP 1 Score: 590.5 bits (1521), Expect = 3.800e-165
Identity = 304/380 (80.00%), Postives = 330/380 (86.84%), Query Frame = 0 
Query:    8 SQLALLLVFWGLSSTQAFVSPAIWSRIHSSLRLFGRNPVVAEQQLAATRSSASTPFWRALTFGERMTALRATAPMSFGDFGGSHGSEELTFAEMREQLGTLESQLAGAMELGRYEEAKELVNEITTMKNFLEKQINGGENGG-GMLNTKAPPPASRNPFFDAFGLGGASPAAAAMMAPVQPPAFAPQPRRSNRPGLGAFGSAVGNRRRPAPSTGKSSGGLVN--REGWAGKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGASKPQDNLYQFQCNIRITNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPTVGPGSVYMYMSEFGITCVPEDKKYLGRIEGHFNVLVKEENAVVKVPIAPFWLELPGDTL 385
            SQL ++ V     ST AFVSPAIWSRI SSLRL G+  V AEQ       ++++PF RALTFGERMTALRATAPMSFGDFGG    +EL+FAE+REQLG LES+LAGAME GRY+EAK+LVNEITTMK+FLEKQ+NG + G  G+ N K    ASRNPFFDAFGLGGASP AA MMAPVQP + APQPRRS+RPGLGAFGS VG+RRRP+ S  KSSGGLVN  REGW GKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGAS+PQDNLYQFQCN+R+TNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQP VGPGSVYMYMSEFGITCVPED+KYLGRIEGHFNV VK+ENAVVKVPIAPFWLELPGDTL
Sbjct:   72 SQLVVVSVTLLFGSTNAFVSPAIWSRIQSSLRLHGQR-VEAEQPPVLGSVASTSPFRRALTFGERMTALRATAPMSFGDFGGQQNGDELSFAEVREQLGALESRLAGAMEFGRYDEAKQLVNEITTMKDFLEKQLNGRQVGSDGVPNGKGSSRASRNPFFDAFGLGGASPMAATMMAPVQPSSSAPQPRRSSRPGLGAFGSVVGSRRRPSGSASKSSGGLVNGPREGWVGKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWLELPGDTL 450
The following BLAST results are available for this feature:
BLAST of NO04G03670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28767.13.800e-16580.00ApaG domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03670NO04G03670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03670.1NO04G03670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03670.1.cds1NO04G03670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03670.1 ID=NO04G03670.1|Name=NO04G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGTCCCGCACGTCAATCACCAGCCAATTGGCGCTCCTTCTCGTTTTTTG
GGGCCTCTCTTCGACCCAAGCCTTTGTCAGCCCTGCCATTTGGTCCCGGA
TTCACAGCAGTCTGCGCCTCTTTGGCCGCAACCCTGTAGTAGCAGAACAA
CAGCTTGCCGCCACCAGGAGTAGTGCCTCTACACCGTTTTGGCGGGCGCT
GACGTTTGGAGAGCGCATGACAGCACTTCGGGCAACAGCACCGATGAGCT
TTGGGGATTTCGGGGGTTCACATGGGAGCGAAGAGCTGACCTTCGCAGAG
ATGCGAGAGCAACTGGGCACGCTCGAGTCGCAGTTAGCGGGGGCGATGGA
GTTGGGACGGTACGAGGAGGCTAAGGAATTGGTTAATGAGATCACCACCA
TGAAGAACTTTTTGGAGAAGCAGATTAATGGTGGGGAGAACGGCGGTGGC
ATGTTGAACACGAAGGCGCCCCCCCCTGCATCCCGCAACCCTTTCTTCGA
CGCCTTCGGCTTGGGCGGGGCCTCTCCCGCGGCTGCAGCCATGATGGCTC
CTGTCCAGCCCCCTGCCTTTGCACCGCAGCCTCGCCGTAGCAATCGACCT
GGCTTGGGTGCTTTTGGAAGCGCTGTTGGCAACCGTCGCCGACCTGCACC
CAGCACGGGCAAGAGCTCGGGGGGGCTGGTAAACCGTGAGGGGTGGGCAG
GGAAGGGAAAAAGCGGGGATTTACCAATGGAAGCTGTTAGGAAGCGTCAT
TCTGACATCACCGCCTACGGCATCCGCGTCGAGGTGTTTTGTTTTTTCCA
ACCAGGGGCAAGCAAGCCCCAGGACAACCTGTACCAGTTTCAGTGCAACA
TCCGCATTACCAACACCAACCCGGGGGACGTGCAGCTTCTTTCTCGCGAA
CTCAAGATCTTTAAGGCTGACGGCTCGCCTCCTGAGTACGGGCCTGCGTC
GCAGCAGTTGGAGAGTCAGCCGACGGTGGGTCCAGGATCAGTTTATATGT
ACATGAGCGAGTTTGGGATTACGTGTGTGCCGGAGGATAAGAAGTATTTG
GGGCGGATCGAGGGTCATTTTAATGTACTGGTCAAAGAGGAGAATGCAGT
GGTTAAGGTGCCGATTGCCCCGTTCTGGCTGGAGTTGCCCGGAGATACGT
TGGTGTTGGCTTAA
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protein sequence of NO04G03670.1

>NO04G03670.1-protein ID=NO04G03670.1-protein|Name=NO04G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSRTSITSQLALLLVFWGLSSTQAFVSPAIWSRIHSSLRLFGRNPVVAEQ
QLAATRSSASTPFWRALTFGERMTALRATAPMSFGDFGGSHGSEELTFAE
MREQLGTLESQLAGAMELGRYEEAKELVNEITTMKNFLEKQINGGENGGG
MLNTKAPPPASRNPFFDAFGLGGASPAAAAMMAPVQPPAFAPQPRRSNRP
GLGAFGSAVGNRRRPAPSTGKSSGGLVNREGWAGKGKSGDLPMEAVRKRH
SDITAYGIRVEVFCFFQPGASKPQDNLYQFQCNIRITNTNPGDVQLLSRE
LKIFKADGSPPEYGPASQQLESQPTVGPGSVYMYMSEFGITCVPEDKKYL
GRIEGHFNVLVKEENAVVKVPIAPFWLELPGDTLVLA*
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mRNA from alignment at chr4:994518..995681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03670.1 ID=NO04G03670.1|Name=NO04G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at chr4:994518..995681- (Nannochloropsis oceanica)
ATGTCCCGCACGTCAATCACCAGCCAATTGGCGCTCCTTCTCGTTTTTTG
GGGCCTCTCTTCGACCCAAGCCTTTGTCAGCCCTGCCATTTGGTCCCGGA
TTCACAGCAGTCTGCGCCTCTTTGGCCGCAACCCTGTAGTAGCAGAACAA
CAGCTTGCCGCCACCAGGAGTAGTGCCTCTACACCGTTTTGGCGGGCGCT
GACGTTTGGAGAGCGCATGACAGCACTTCGGGCAACAGCACCGATGAGCT
TTGGGGATTTCGGGGGTTCACATGGGAGCGAAGAGCTGACCTTCGCAGAG
ATGCGAGAGCAACTGGGCACGCTCGAGTCGCAGTTAGCGGGGGCGATGGA
GTTGGGACGGTACGAGGAGGCTAAGGAATTGGTTAATGAGATCACCACCA
TGAAGAACTTTTTGGAGAAGCAGATTAATGGTGGGGAGAACGGCGGTGGC
ATGTTGAACACGAAGGCGCCCCCCCCTGCATCCCGCAACCCTTTCTTCGA
CGCCTTCGGCTTGGGCGGGGCCTCTCCCGCGGCTGCAGCCATGATGGCTC
CTGTCCAGCCCCCTGCCTTTGCACCGCAGCCTCGCCGTAGCAATCGACCT
GGCTTGGGTGCTTTTGGAAGCGCTGTTGGCAACCGTCGCCGACCTGCACC
CAGCACGGGCAAGAGCTCGGGGGGGCTGGTAAACCGTGAGGGGTGGGCAG
GGAAGGGAAAAAGCGGGGATTTACCAATGGAAGCTGTTAGGAAGCGTCAT
TCTGACATCACCGCCTACGGCATCCGCGTCGAGGTGTTTTGTTTTTTCCA
ACCAGGGGCAAGCAAGCCCCAGGACAACCTGTACCAGTTTCAGTGCAACA
TCCGCATTACCAACACCAACCCGGGGGACGTGCAGCTTCTTTCTCGCGAA
CTCAAGATCTTTAAGGCTGACGGCTCGCCTCCTGAGTACGGGCCTGCGTC
GCAGCAGTTGGAGAGTCAGCCGACGGTGGGTCCAGGATCAGTTTATATGT
ACATGAGCGAGTTTGGGATTACGTGTGTGCCGGAGGATAAGAAGTATTTG
GGGCGGATCGAGGGTCATTTTAATGTACTGGTCAAAGAGGAGAATGCAGT
GGTTAAGGTGCCGATTGCCCCGTTCTGGCTGGAGTTGCCCGGAGATACGT
TGGTGTTGGCTTAA
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Coding sequence (CDS) from alignment at chr4:994518..995681-

>NO04G03670.1 ID=NO04G03670.1|Name=NO04G03670.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr4:994518..995681- (Nannochloropsis oceanica)
ATGTCCCGCACGTCAATCACCAGCCAATTGGCGCTCCTTCTCGTTTTTTG
GGGCCTCTCTTCGACCCAAGCCTTTGTCAGCCCTGCCATTTGGTCCCGGA
TTCACAGCAGTCTGCGCCTCTTTGGCCGCAACCCTGTAGTAGCAGAACAA
CAGCTTGCCGCCACCAGGAGTAGTGCCTCTACACCGTTTTGGCGGGCGCT
GACGTTTGGAGAGCGCATGACAGCACTTCGGGCAACAGCACCGATGAGCT
TTGGGGATTTCGGGGGTTCACATGGGAGCGAAGAGCTGACCTTCGCAGAG
ATGCGAGAGCAACTGGGCACGCTCGAGTCGCAGTTAGCGGGGGCGATGGA
GTTGGGACGGTACGAGGAGGCTAAGGAATTGGTTAATGAGATCACCACCA
TGAAGAACTTTTTGGAGAAGCAGATTAATGGTGGGGAGAACGGCGGTGGC
ATGTTGAACACGAAGGCGCCCCCCCCTGCATCCCGCAACCCTTTCTTCGA
CGCCTTCGGCTTGGGCGGGGCCTCTCCCGCGGCTGCAGCCATGATGGCTC
CTGTCCAGCCCCCTGCCTTTGCACCGCAGCCTCGCCGTAGCAATCGACCT
GGCTTGGGTGCTTTTGGAAGCGCTGTTGGCAACCGTCGCCGACCTGCACC
CAGCACGGGCAAGAGCTCGGGGGGGCTGGTAAACCGTGAGGGGTGGGCAG
GGAAGGGAAAAAGCGGGGATTTACCAATGGAAGCTGTTAGGAAGCGTCAT
TCTGACATCACCGCCTACGGCATCCGCGTCGAGGTGTTTTGTTTTTTCCA
ACCAGGGGCAAGCAAGCCCCAGGACAACCTGTACCAGTTTCAGTGCAACA
TCCGCATTACCAACACCAACCCGGGGGACGTGCAGCTTCTTTCTCGCGAA
CTCAAGATCTTTAAGGCTGACGGCTCGCCTCCTGAGTACGGGCCTGCGTC
GCAGCAGTTGGAGAGTCAGCCGACGGTGGGTCCAGGATCAGTTTATATGT
ACATGAGCGAGTTTGGGATTACGTGTGTGCCGGAGGATAAGAAGTATTTG
GGGCGGATCGAGGGTCATTTTAATGTACTGGTCAAAGAGGAGAATGCAGT
GGTTAAGGTGCCGATTGCCCCGTTCTGGCTGGAGTTGCCCGGAGATACGT
TGGTGTTGGCTTAA
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Synonyms
Publications