NO04G03640, NO04G03640 (gene) Nannochloropsis oceanica

Overview
NameNO04G03640
Unique NameNO04G03640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length447
Alignment locationchr4:988289..988735 -

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Properties
Property NameValue
DescriptionElongation factor Ts, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:988289..988735 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003746translation elongation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: INTERPRO
TermDefinition
IPR036402EF-Ts_dimer_sf
IPR009060UBA-like
IPR001816Transl_elong_EFTs/EF1B
IPR014039Transl_elong_EFTs/EF1B_dimer
Homology
BLAST of NO04G03640 vs. NCBI_GenBank
Match: EWM28678.1 (elongation factor ts [Nannochloropsis gaditana])

HSP 1 Score: 193.7 bits (491), Expect = 4.000e-46
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0
Query:   29 RAFATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPP 137
            R++A APLALVKELR ASGAPITDCKKALEAEGV+GD+AKAFEWLRKKGQATVMKNNRAANEGLVGIAVEG AGVIVEVNSETDFVARNADFQAF+KDLA AIL MPP
Sbjct:   31 RSYAAAPLALVKELRSASGAPITDCKKALEAEGVDGDIAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGQAGVIVEVNSETDFVARNADFQAFVKDLAGAILRMPP 138          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: CBJ48335.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 121.7 bits (304), Expect = 1.900e-24
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 0
Query:   36 LALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG--QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIK 126
            +AL+KELR+ASGAP+ DCK AL AEGV GD+A+AF+WLRK+G  +AT M  +R+ANEGL+G+ V+G  G +VEVNSETDFVARNA FQ F+K
Sbjct:   45 MALIKELREASGAPVVDCKNALAAEGVNGDIAQAFQWLRKRGIAKATSMA-DRSANEGLIGLRVDGPHGALVEVNSETDFVARNAKFQEFVK 135          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: EWM20492.1 (elongation factor ts, partial [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 2.100e-23
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 0
Query:   35 PLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            P+ L+K+LR  SGAPI DCKKAL  E +  D+  AF+WLRKKGQAT+ K +RA  EGLV +AV+G+ GV VEVNSETDFVARNADFQ F+   A   L
Sbjct:   49 PMDLIKKLRGMSGAPIMDCKKALAEEKL--DVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTAL 144          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_088520769.1 (elongation factor Ts [Rhodoblastus acidophilus] >SNB70911.1 elongation factor Ts [Rhodoblastus acidophilus] >PPQ39755.1 elongation factor Ts [Rhodoblastus acidophilus])

HSP 1 Score: 105.1 bits (261), Expect = 1.900e-19
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 0
Query:   32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG-QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLA 129
            A    ALVK+LR+ +GA + DCK+AL A   EGD+  A +WLRKKG      K++R A EGLVGIA+ G+ GV+VEVNSETDFVARN +FQA +K +A
Sbjct:    2 ANITAALVKDLREKTGAGMMDCKQALNA--TEGDIEAAVDWLRKKGLSKAAKKSDRVAAEGLVGIAISGTTGVVVEVNSETDFVARNEEFQALVKTIA 97          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_021097052.1 (elongation factor Ts [Rubellimicrobium thermophilum] >EPX86144.1 translation elongation factor Ts (EF-Ts) [Rubellimicrobium thermophilum DSM 16684])

HSP 1 Score: 104.0 bits (258), Expect = 4.100e-19
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 0
Query:   33 TAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQA-TVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            T   ++VKELR+A+GA + D KKAL      GD+  A +WLR KG A    K+ R A EGLVG+AVEG  GV+VEVNSETDFVA+NA+FQA ++D+A A L
Sbjct:    2 TITASMVKELREATGAGMMDAKKALTE--TNGDMDAAIDWLRTKGLAKAAKKSGRTAAEGLVGVAVEGGRGVVVEVNSETDFVAKNAEFQALVRDVAHAAL 100          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: PCI38563.1 (elongation factor Ts [Rhodospirillaceae bacterium])

HSP 1 Score: 104.0 bits (258), Expect = 4.100e-19
Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG-QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            A    ALVKELR+ SGA + DCKKAL   G  GDL  A +WLR KG  A   K+ R A EGLVG+AV+GS G +VEVNSETDFVARN  FQ F+  +A   L
Sbjct:    2 AAITAALVKELRETSGAGMMDCKKALTETG--GDLTAAADWLRTKGLAAAAKKSGRVAAEGLVGVAVDGSKGAVVEVNSETDFVARNEQFQGFVSAVAKLAL 101          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: OYZ36485.1 (translation elongation factor Ts [Alphaproteobacteria bacterium 16-39-46] >OZA41768.1 translation elongation factor Ts [Alphaproteobacteria bacterium 17-39-52])

HSP 1 Score: 103.2 bits (256), Expect = 7.100e-19
Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 0
Query:   38 LVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG-QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLA 129
            LVK LR+ +GA + DCKKALEA  V+GDL +  +WLRKKG  A   K+ R A+EGL+GI  +G+AGV++EVN+ETDFVARN  FQ F+K ++
Sbjct:    8 LVKTLREKTGAGMMDCKKALEA--VKGDLEEGIDWLRKKGLSAAAKKSGRVASEGLIGIVTKGTAGVLLEVNAETDFVARNEQFQKFVKTVS 97          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_106335375.1 (elongation factor Ts [Alsobacter sp. SH9] >PSC06461.1 elongation factor Ts [Alsobacter sp. SH9])

HSP 1 Score: 103.2 bits (256), Expect = 7.100e-19
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 0
Query:   32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQA-TVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133
            AT   ALVK+LR+ +GA + DCK ALEA G  GD+ +A +WLRKKG A    K+ R A EGLV +AV  + GV+VEVNSETDFVARN +FQA ++ +A   L
Sbjct:    2 ATITAALVKDLREKTGAGMMDCKAALEANG--GDVEQAIDWLRKKGLAKAAKKSGRVAAEGLVAVAVRENRGVVVEVNSETDFVARNEEFQALVRTVADVAL 101          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_043918885.1 (elongation factor Ts [Jannaschia aquimarina] >KIT16190.1 Elongation factor Ts [Jannaschia aquimarina] >SNT40080.1 translation elongation factor Ts (EF-Ts) [Jannaschia aquimarina])

HSP 1 Score: 102.8 bits (255), Expect = 9.200e-19
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQA-TVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMP 136
            A VKELRD++GA + D KKAL     +GD+  A +WLR KG A    K+ R A EGLV +AVEG  GV VEVNSETDFVA+NA+FQ  +KD+A   L++P
Sbjct:    6 AQVKELRDSTGAGMMDAKKALTE--TDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVEGGTGVAVEVNSETDFVAKNAEFQTMVKDIAQTALNVP 103          
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_062732287.1 (elongation factor Ts [Sphingobium abikonense])

HSP 1 Score: 102.8 bits (255), Expect = 9.200e-19
Identity = 61/110 (55.45%), Postives = 71/110 (64.55%), Query Frame = 0
Query:   37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVM-KNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPPPWANMASSA 146
            A VKELRD SGA + DCKKAL      GDL  A +WLR KG A    K++R A EGLVG+AV G+ GV VEVNSETDFVA+N  FQ F++ +AT  L      A   SSA
Sbjct:    7 AAVKELRDRSGAGMMDCKKALTE--ANGDLEAATDWLRAKGLAAAQKKSSRTAAEGLVGVAVAGTKGVAVEVNSETDFVAKNDQFQDFVRTVATVALETGAADAEALSSA 114          
The following BLAST results are available for this feature:
BLAST of NO04G03640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28678.14.000e-4690.74elongation factor ts [Nannochloropsis gaditana][more]
CBJ48335.11.900e-2466.30conserved unknown protein [Ectocarpus siliculosus][more]
EWM20492.12.100e-2362.24elongation factor ts, partial [Nannochloropsis gad... [more]
WP_088520769.11.900e-1957.14elongation factor Ts [Rhodoblastus acidophilus] >S... [more]
WP_021097052.14.100e-1956.44elongation factor Ts [Rubellimicrobium thermophilu... [more]
PCI38563.14.100e-1957.84elongation factor Ts [Rhodospirillaceae bacterium][more]
OYZ36485.17.100e-1957.61translation elongation factor Ts [Alphaproteobacte... [more]
WP_106335375.17.100e-1955.88elongation factor Ts [Alsobacter sp. SH9] >PSC0646... [more]
WP_043918885.19.200e-1956.00elongation factor Ts [Jannaschia aquimarina] >KIT1... [more]
WP_062732287.19.200e-1955.45elongation factor Ts [Sphingobium abikonense][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03640.1NO04G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03640.1NO04G03640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03640 ID=NO04G03640|Name=NO04G03640|organism=Nannochloropsis oceanica|type=gene|length=447bp
ATGATGCTATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGC
ATCCTTCTTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGG
CCCCTTTGGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATC
ACGGACTGCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGC
CAAGGCATTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGA
ACAATCGGGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCC
GCGGGAGTGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAA
CGCCGACTTCCAAGCCTTCATCAAAGATCTCGCCACCGCCATTCTTCACA
TGCCCCCCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGA
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protein sequence of NO04G03640.1

>NO04G03640.1-protein ID=NO04G03640.1-protein|Name=NO04G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MMLWRSAAASTTIRTRASFFLLGSWEVNRAFATAPLALVKELRDASGAPI
TDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGS
AGVIVEVNSETDFVARNADFQAFIKDLATAILHMPPPWANMASSATAF*
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Synonyms
Publications