NO04G03640.1, NO04G03640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03640.1
Unique NameNO04G03640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length447
Alignment locationchr4:988289..988735 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:988289..988735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03640.1 vs.
Match: EWM28678.1 (elongation factor ts [Nannochloropsis gaditana])

HSP 1 Score: 193.7 bits (491), Expect = 4.000e-46
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0 
Query:   29 RAFATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPP 137
            R++A APLALVKELR ASGAPITDCKKALEAEGV+GD+AKAFEWLRKKGQATVMKNNRAANEGLVGIAVEG AGVIVEVNSETDFVARNADFQAF+KDLA AIL MPP
Sbjct:   31 RSYAAAPLALVKELRSASGAPITDCKKALEAEGVDGDIAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGQAGVIVEVNSETDFVARNADFQAFVKDLAGAILRMPP 138
The following BLAST results are available for this feature:
BLAST of NO04G03640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28678.14.000e-4690.74elongation factor ts [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03640NO04G03640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03640.1NO04G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03640.1.cds1NO04G03640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03640.1 ID=NO04G03640.1|Name=NO04G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=447bp
ATGATGCTATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGC
ATCCTTCTTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGG
CCCCTTTGGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATC
ACGGACTGCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGC
CAAGGCATTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGA
ACAATCGGGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCC
GCGGGAGTGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAA
CGCCGACTTCCAAGCCTTCATCAAAGATCTCGCCACCGCCATTCTTCACA
TGCCCCCCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGA
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protein sequence of NO04G03640.1

>NO04G03640.1-protein ID=NO04G03640.1-protein|Name=NO04G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MMLWRSAAASTTIRTRASFFLLGSWEVNRAFATAPLALVKELRDASGAPI
TDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGS
AGVIVEVNSETDFVARNADFQAFIKDLATAILHMPPPWANMASSATAF*
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mRNA from alignment at chr4:988289..988735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03640.1 ID=NO04G03640.1|Name=NO04G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=447bp|location=Sequence derived from alignment at chr4:988289..988735- (Nannochloropsis oceanica)
ATGATGCTATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGC
ATCCTTCTTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGG
CCCCTTTGGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATC
ACGGACTGCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGC
CAAGGCATTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGA
ACAATCGGGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCC
GCGGGAGTGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAA
CGCCGACTTCCAAGCCTTCATCAAAGATCTCGCCACCGCCATTCTTCACA
TGCCCCCCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGA
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Coding sequence (CDS) from alignment at chr4:988289..988735-

>NO04G03640.1 ID=NO04G03640.1|Name=NO04G03640.1|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr4:988289..988735- (Nannochloropsis oceanica)
ATGATGCTATGGAGATCCGCCGCCGCGTCCACTACTATCCGGACCCGGGC
ATCCTTCTTCCTACTTGGATCATGGGAGGTTAACCGTGCTTTTGCTACGG
CCCCTTTGGCCCTGGTCAAAGAGCTTCGTGACGCCTCGGGTGCCCCTATC
ACGGACTGCAAAAAAGCCTTGGAAGCCGAGGGCGTTGAAGGGGACCTGGC
CAAGGCATTCGAATGGCTTCGTAAAAAAGGGCAAGCCACGGTCATGAAGA
ACAATCGGGCGGCCAACGAGGGGCTGGTCGGTATTGCTGTCGAGGGCTCC
GCGGGAGTGATTGTCGAGGTGAACAGCGAGACTGATTTCGTGGCCCGCAA
CGCCGACTTCCAAGCCTTCATCAAAGATCTCGCCACCGCCATTCTTCACA
TGCCCCCCCCATGGGCCAACATGGCGAGCTCAGCAACAGCGTTTTGA
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Synonyms
Publications