NO04G03560, NO04G03560 (gene) Nannochloropsis oceanica

Overview
NameNO04G03560
Unique NameNO04G03560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1678
Alignment locationchr4:968010..969687 -

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Properties
Property NameValue
DescriptionTrna (Guanine-n-)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:968010..969687 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008176tRNA (guanine-N7-)-methyltransferase activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006400tRNA modification
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR003358tRNA_(Gua-N-7)_MeTrfase_Trmb
Homology
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_051158517.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Nodosilinea nodulosa])

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-16
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 0
Query:  113 RGGIKKKLRA---IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231
            RG I+ K  A   +RQHVNPLS  YQ PV +P+ W +  FA P  P HIDIG  +G F + MA+ + + NFLGLEIR+P  E A K+ +  G+  N+HF+  N N+ +  +++    QS +
Sbjct:    5 RGSIEVKAVAVVRVRQHVNPLSERYQAPVAMPD-WGE-VFANPQQPLHIDIGCGKGMFLLQMAQLQPQWNFLGLEIRKPVAESAQKRQQDAGL-TNLHFMFCNVNISLRSLLESWGAQSPL 122          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_018398542.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [filamentous cyanobacterium ESFC-1])

HSP 1 Score: 95.9 bits (237), Expect = 1.800e-16
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQ 228
            +RQHVNPLS  YQ  +  P  W K  ++    P H+DIG ARGRF + MARE+ + NFLGLEIR P VEEA +  ++ G+  N+H++  N N+D+D ++  +  Q
Sbjct:    6 VRQHVNPLSKKYQEIIS-PPNWEK-IYSNLQQPLHLDIGCARGRFLLKMAREQPDWNFLGLEIRDPLVEEANRIRDELGL-TNLHYLFSNVNIDLDSLLSSLPLQ 107          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_007100726.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Synechococcus sp. RS9917] >EAQ68654.1 hypothetical protein RS9917_03693 [Synechococcus sp. RS9917])

HSP 1 Score: 95.5 bits (236), Expect = 2.400e-16
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDID 219
            +RQHVNPLS  +Q P +LP    +A F+ P LP H+DIGSARGRF +D+A  +   N LG+EIRRP VE A +  ++  +  N+HF+  NANV ++
Sbjct:    1 MRQHVNPLSRFFQLPRELPA--PEALFSDPFLPIHLDIGSARGRFLLDLAAVQPHWNHLGVEIRRPLVEAAQRDRDRLNL-HNLHFLFCNANVSLE 93          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_038084102.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Tolypothrix bouteillei] >KIE08865.1 tRNA (guanine-N7)-methyltransferase [Tolypothrix bouteillei VB521301])

HSP 1 Score: 94.4 bits (233), Expect = 5.400e-16
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNAN 215
            +RQHVNPL+  YQ P++ P  W K  FA+P+LP H+DIG A+GRF ++MA+ +   NFLGLEIR P V +A +  ++ G++ N+H++  NAN
Sbjct:    6 VRQHVNPLAHKYQTPLN-PPNWEK-VFAQPNLPLHLDIGCAKGRFVLNMAQVEPMWNFLGLEIREPLVADANRLRDELGLR-NLHYLFCNAN 94          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_017749893.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Scytonema hofmannii] >KYC39872.1 tRNA (guanine-N7)-methyltransferase [Scytonema hofmannii PCC 7110])

HSP 1 Score: 94.0 bits (232), Expect = 7.000e-16
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNAN 215
            +RQHVNPL+  YQ P+  P  W K  +A+P+LP H+DIG ARGRF ++MA+ ++  NFLGLEIR P V EA K  ++ G+  N+H++  NAN
Sbjct:    6 VRQHVNPLAHKYQTPLS-PIDWEK-VYAQPNLPLHLDIGCARGRFVLNMAQVETMWNFLGLEIREPLVVEANKLRDELGLV-NLHYLFCNAN 94          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: KKZ14096.1 (tRNA (guanine-N7)-methyltransferase [Candidatus Synechococcus spongiarum 15L])

HSP 1 Score: 94.0 bits (232), Expect = 7.000e-16
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDV 225
            +RQHVNPL   +Q+P++LP   + A F +PH P H+DIG ARGRF +DMA    + N LGLEIRRP VE+A  + +   + DN+H++  N  V +  + + +
Sbjct:    1 MRQHVNPLGRFFQQPLELPS--LTALFPRPHQPLHLDIGCARGRFLVDMAALYPQRNHLGLEIRRPLVEQAETQRQLRQL-DNLHYLFCNVTVSLASLTRQL 99          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_013321486.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Cyanothece sp. PCC 7822] >ADN13379.1 tRNA (guanine-N(7)-)-methyltransferase [Cyanothece sp. PCC 7822])

HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQE 227
            +RQHVNPLS  Y  P+ +P  W +  FA   LP H+DIG ARG+F + MA    +INFLG+EIR P V+EAL + E   +  N+HF+  N NV +  +++ + E
Sbjct:    6 VRQHVNPLSHKYSNPISIP-NW-QEVFADTALPLHLDIGCARGKFLLKMASLYPQINFLGIEIREPLVKEALVQRELLQL-SNLHFLFCNINVSVSPLLESLPE 106          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_015155532.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Chroococcidiopsis thermalis] >AFY88987.1 tRNA (guanine-N(7)-)-methyltransferase [Chroococcidiopsis thermalis PCC 7203])

HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQE 227
            +RQHVNPL++ YQ PV  PE W K  FA P  P H+DIG  +GRF ++MA+ +S  NFLGLEIR P V+EA K  ++ G+  N+H++  N N  +  ++  + E
Sbjct:    5 VRQHVNPLANKYQTPVSPPE-WDK-IFALPTQPLHLDIGCGKGRFVLEMAQLESSWNFLGLEIREPLVDEANKWRDELGL-TNLHYLFCNVNNSLLPILSSLPE 105          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_017712364.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Prochlorothrix hollandica] >KKI98914.1 tRNA (guanine-N7)-methyltransferase [Prochlorothrix hollandica PCC 9006 = CALU 1027])

HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVV 222
            +RQHVNPLS  +Q  V +P  W +A +  PH P H+DIG+ARGRF + +A+++ + NFLGLEIR P V+ A    ++  +  N+H++  NANV ++ V+
Sbjct:    5 VRQHVNPLSQKFQAAV-VPLDW-EACYGAPHAPLHLDIGAARGRFLLALAQQRRDWNFLGLEIREPLVQSANDDRDRLSL-SNLHYLFCNANVHLENVL 100          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: SBO43645.1 (tRNA (guanine-N(7)-)-methyltransferase [Cyanobium sp. NIES-981])

HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDID 219
            +RQHVNPLS  YQ+P  LP       F +P LP H+DIG ARGRF + +A  + + N+LGLEIRRP VE A  +    G+ D++HF+  NANV ++
Sbjct:    2 VRQHVNPLSRFYQQPRPLPP--PADLFPRPELPIHLDIGCARGRFLLALAPLEPQRNYLGLEIRRPLVEAAEAERRALGL-DHLHFLFCNANVSLE 94          
The following BLAST results are available for this feature:
BLAST of NO04G03560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_051158517.11.100e-1642.98tRNA (guanosine(46)-N7)-methyltransferase TrmB [No... [more]
WP_018398542.11.800e-1645.71tRNA (guanosine(46)-N7)-methyltransferase TrmB [fi... [more]
WP_007100726.12.400e-1648.96tRNA (guanosine(46)-N7)-methyltransferase TrmB [Sy... [more]
WP_038084102.15.400e-1648.91tRNA (guanosine(46)-N7)-methyltransferase TrmB [To... [more]
WP_017749893.17.000e-1651.09tRNA (guanosine(46)-N7)-methyltransferase TrmB [Sc... [more]
KKZ14096.17.000e-1644.12tRNA (guanine-N7)-methyltransferase [Candidatus Sy... [more]
WP_013321486.19.100e-1645.19tRNA (guanosine(46)-N7)-methyltransferase TrmB [Cy... [more]
WP_015155532.19.100e-1646.15tRNA (guanosine(46)-N7)-methyltransferase TrmB [Ch... [more]
WP_017712364.19.100e-1644.44tRNA (guanosine(46)-N7)-methyltransferase TrmB [Pr... [more]
SBO43645.19.100e-1648.96tRNA (guanine-N(7)-)-methyltransferase [Cyanobium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009502NSK009502Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03560.2NO04G03560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G03560.1NO04G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579209gene_2133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g34gene1895Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03560.2NO04G03560.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G03560.1NO04G03560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03560 ID=NO04G03560|Name=NO04G03560|organism=Nannochloropsis oceanica|type=gene|length=1678bp
CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA
AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC
AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC
TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG
GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG
TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC
TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT
GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA
GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA
GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC
ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG
AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAgtaaagtctaa
cttcgtagccggggttcttggcacagcttttgatttatcgagtttcctat
tcaatcttacccaaatatctcacacatccatcacagGAAGAAGCTCCGCG
CCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCCGTG
GATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCTCCC
TTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACATGG
CGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGGCCA
TGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGATAA
TGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGGTGA
AGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATAGATGGAGG
ATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGGCCTTAGGC
AGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTGAAGCAAAA
GTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTACATCCGTG
TCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTTTGCGACTC
TAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAG
CGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAA
GCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAG
AGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGT
CCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAG
AGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTC
GTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTCAGT
AGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTAAAT
TAAATTATGTTTGCTCTCTCAGTTTAGA
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protein sequence of NO04G03560.2

>NO04G03560.2-protein ID=NO04G03560.2-protein|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPASKAGPWTGFWNSRWPLFLLVSVGMNLRSLALVWRAEGGVGKERISLP
RIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGK
VEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFA
KPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKY
GIKDNVHFVALNANVDIDRVVKDVQEQSEIVRCGYRWRMERER*
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protein sequence of NO04G03560.1

>NO04G03560.1-protein ID=NO04G03560.1-protein|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MPASKAGPWTGFWNSRWPLFLLVSVGMNLRSLALVWRAEGGVGKERISLP
RIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGK
VEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFA
KPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKY
GIKDNVHFVALNANVDIDRVVKDVQEQSEIVRYSVQFPDPHFKAKHKKRR
MVQPALVAAMCASLKPEGGEILIQSDVLEVAESMREAFAEDELVTDVCPP
GEWMEENPLMVPTEREKLTLGRGDPVYRTVFRRKDSS*
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Synonyms
Publications