NO04G03560, NO04G03560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_051158517.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Nodosilinea nodulosa]) HSP 1 Score: 96.7 bits (239), Expect = 1.100e-16 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 0 Query: 113 RGGIKKKLRA---IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231 RG I+ K A +RQHVNPLS YQ PV +P+ W + FA P P HIDIG +G F + MA+ + + NFLGLEIR+P E A K+ + G+ N+HF+ N N+ + +++ QS + Sbjct: 5 RGSIEVKAVAVVRVRQHVNPLSERYQAPVAMPD-WGE-VFANPQQPLHIDIGCGKGMFLLQMAQLQPQWNFLGLEIRKPVAESAQKRQQDAGL-TNLHFMFCNVNISLRSLLESWGAQSPL 122
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_018398542.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [filamentous cyanobacterium ESFC-1]) HSP 1 Score: 95.9 bits (237), Expect = 1.800e-16 Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQ 228 +RQHVNPLS YQ + P W K ++ P H+DIG ARGRF + MARE+ + NFLGLEIR P VEEA + ++ G+ N+H++ N N+D+D ++ + Q Sbjct: 6 VRQHVNPLSKKYQEIIS-PPNWEK-IYSNLQQPLHLDIGCARGRFLLKMAREQPDWNFLGLEIRDPLVEEANRIRDELGL-TNLHYLFSNVNIDLDSLLSSLPLQ 107
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_007100726.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Synechococcus sp. RS9917] >EAQ68654.1 hypothetical protein RS9917_03693 [Synechococcus sp. RS9917]) HSP 1 Score: 95.5 bits (236), Expect = 2.400e-16 Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDID 219 +RQHVNPLS +Q P +LP +A F+ P LP H+DIGSARGRF +D+A + N LG+EIRRP VE A + ++ + N+HF+ NANV ++ Sbjct: 1 MRQHVNPLSRFFQLPRELPA--PEALFSDPFLPIHLDIGSARGRFLLDLAAVQPHWNHLGVEIRRPLVEAAQRDRDRLNL-HNLHFLFCNANVSLE 93
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_038084102.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Tolypothrix bouteillei] >KIE08865.1 tRNA (guanine-N7)-methyltransferase [Tolypothrix bouteillei VB521301]) HSP 1 Score: 94.4 bits (233), Expect = 5.400e-16 Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNAN 215 +RQHVNPL+ YQ P++ P W K FA+P+LP H+DIG A+GRF ++MA+ + NFLGLEIR P V +A + ++ G++ N+H++ NAN Sbjct: 6 VRQHVNPLAHKYQTPLN-PPNWEK-VFAQPNLPLHLDIGCAKGRFVLNMAQVEPMWNFLGLEIREPLVADANRLRDELGLR-NLHYLFCNAN 94
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_017749893.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Scytonema hofmannii] >KYC39872.1 tRNA (guanine-N7)-methyltransferase [Scytonema hofmannii PCC 7110]) HSP 1 Score: 94.0 bits (232), Expect = 7.000e-16 Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNAN 215 +RQHVNPL+ YQ P+ P W K +A+P+LP H+DIG ARGRF ++MA+ ++ NFLGLEIR P V EA K ++ G+ N+H++ NAN Sbjct: 6 VRQHVNPLAHKYQTPLS-PIDWEK-VYAQPNLPLHLDIGCARGRFVLNMAQVETMWNFLGLEIREPLVVEANKLRDELGLV-NLHYLFCNAN 94
BLAST of NO04G03560 vs. NCBI_GenBank
Match: KKZ14096.1 (tRNA (guanine-N7)-methyltransferase [Candidatus Synechococcus spongiarum 15L]) HSP 1 Score: 94.0 bits (232), Expect = 7.000e-16 Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDV 225 +RQHVNPL +Q+P++LP + A F +PH P H+DIG ARGRF +DMA + N LGLEIRRP VE+A + + + DN+H++ N V + + + + Sbjct: 1 MRQHVNPLGRFFQQPLELPS--LTALFPRPHQPLHLDIGCARGRFLVDMAALYPQRNHLGLEIRRPLVEQAETQRQLRQL-DNLHYLFCNVTVSLASLTRQL 99
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_013321486.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Cyanothece sp. PCC 7822] >ADN13379.1 tRNA (guanine-N(7)-)-methyltransferase [Cyanothece sp. PCC 7822]) HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16 Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQE 227 +RQHVNPLS Y P+ +P W + FA LP H+DIG ARG+F + MA +INFLG+EIR P V+EAL + E + N+HF+ N NV + +++ + E Sbjct: 6 VRQHVNPLSHKYSNPISIP-NW-QEVFADTALPLHLDIGCARGKFLLKMASLYPQINFLGIEIREPLVKEALVQRELLQL-SNLHFLFCNINVSVSPLLESLPE 106
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_015155532.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Chroococcidiopsis thermalis] >AFY88987.1 tRNA (guanine-N(7)-)-methyltransferase [Chroococcidiopsis thermalis PCC 7203]) HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16 Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQE 227 +RQHVNPL++ YQ PV PE W K FA P P H+DIG +GRF ++MA+ +S NFLGLEIR P V+EA K ++ G+ N+H++ N N + ++ + E Sbjct: 5 VRQHVNPLANKYQTPVSPPE-WDK-IFALPTQPLHLDIGCGKGRFVLEMAQLESSWNFLGLEIREPLVDEANKWRDELGL-TNLHYLFCNVNNSLLPILSSLPE 105
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_017712364.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Prochlorothrix hollandica] >KKI98914.1 tRNA (guanine-N7)-methyltransferase [Prochlorothrix hollandica PCC 9006 = CALU 1027]) HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16 Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVV 222 +RQHVNPLS +Q V +P W +A + PH P H+DIG+ARGRF + +A+++ + NFLGLEIR P V+ A ++ + N+H++ NANV ++ V+ Sbjct: 5 VRQHVNPLSQKFQAAV-VPLDW-EACYGAPHAPLHLDIGAARGRFLLALAQQRRDWNFLGLEIREPLVQSANDDRDRLSL-SNLHYLFCNANVHLENVL 100
BLAST of NO04G03560 vs. NCBI_GenBank
Match: SBO43645.1 (tRNA (guanine-N(7)-)-methyltransferase [Cyanobium sp. NIES-981]) HSP 1 Score: 93.6 bits (231), Expect = 9.100e-16 Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDID 219 +RQHVNPLS YQ+P LP F +P LP H+DIG ARGRF + +A + + N+LGLEIRRP VE A + G+ D++HF+ NANV ++ Sbjct: 2 VRQHVNPLSRFYQQPRPLPP--PADLFPRPELPIHLDIGCARGRFLLALAPLEPQRNYLGLEIRRPLVEAAEAERRALGL-DHLHFLFCNANVSLE 94 The following BLAST results are available for this feature:
BLAST of NO04G03560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03560 ID=NO04G03560|Name=NO04G03560|organism=Nannochloropsis oceanica|type=gene|length=1678bpback to top protein sequence of NO04G03560.2 >NO04G03560.2-protein ID=NO04G03560.2-protein|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=244bpback to top protein sequence of NO04G03560.1 >NO04G03560.1-protein ID=NO04G03560.1-protein|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bpback to top Synonyms
Publications
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