NO04G03560.2, NO04G03560.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03560.2
Unique NameNO04G03560.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr4:968010..969687 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:968010..969687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03560.2 vs.
Match: EWM28812.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 3.700e-49
Identity = 117/212 (55.19%), Postives = 139/212 (65.57%), Query Frame = 0
Query:   28 NLRSLALVWRAEGGVGKERI---SLPRIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGKVEKGG----DETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEIVR 233
            NL  +A + RA     KE +   S+P ++ G L+     C C+   R       K  TDI A   D  EA      +E GG       T S R G KKKLRAIRQHVNPLSSLYQRP ++   WV+ AFA P LPFHIDIGSARGRFCI MARE  ++NFLGLEIRRPCVEE+ KKMEKY +KDNVHF+ALN NVD++R+V DV++ SEIVR
Sbjct:   29 NLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSR---CLCAGPQREGGK---KEYTDIHA-LQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVR 233          
The following BLAST results are available for this feature:
BLAST of NO04G03560.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28812.13.700e-4955.19trna (guanine-n -)-methyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03560NO04G03560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03560.2NO04G03560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03560.2.cds1NO04G03560.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03560.2.cds2NO04G03560.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03560.2 ID=NO04G03560.2|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA
AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC
AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC
TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG
GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG
TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC
TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT
GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA
GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA
GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC
ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG
AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGAAGAAGCTCC
GCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCC
GTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCT
CCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACA
TGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGG
CCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGA
TAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGG
TGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATAGATGG
AGGATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGGCCTTA
GGCAGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTGAAGCA
AAAGTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTACATCC
GTGTCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTTTGCGA
CTCTAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAA
AAGCGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCT
CAAGCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAG
CAGAGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTT
TGTCCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGA
GAGAGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCT
TTCGTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTC
AGTAGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTA
AATTAAATTATGTTTGCTCTCTCAGTTTAGA
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protein sequence of NO04G03560.2

>NO04G03560.2-protein ID=NO04G03560.2-protein|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPASKAGPWTGFWNSRWPLFLLVSVGMNLRSLALVWRAEGGVGKERISLP
RIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGK
VEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFA
KPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKY
GIKDNVHFVALNANVDIDRVVKDVQEQSEIVRCGYRWRMERER*
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mRNA from alignment at chr4:968010..969687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03560.2 ID=NO04G03560.2|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at chr4:968010..969687- (Nannochloropsis oceanica)
CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGTAAAGTCTAA CTTCGTAGCCGGGGTTCTTGGCACAGCTTTTGATTTATCGAGTTTCCTAT TCAATCTTACCCAAATATCTCACACATCCATCACAGGAAGAAGCTCCGCG CCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCCGTG GATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCTCCC TTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACATGG CGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGGCCA TGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGATAA TGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGGTGA AGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATAGATGGAGG ATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGGCCTTAGGC AGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTGAAGCAAAA GTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTACATCCGTG TCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTTTGCGACTC TAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAG CGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAA GCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAG AGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGT CCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAG AGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTC GTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTCAGT AGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTAAAT TAAATTATGTTTGCTCTCTCAGTTTAGA
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Coding sequence (CDS) from alignment at chr4:968010..969687-

>NO04G03560.2 ID=NO04G03560.2|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr4:968010..969687- (Nannochloropsis oceanica)
ATGCCCGCGAGTAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTG
GCCTCTCTTCCTTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCC
TCGTGTGGCGTGCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCA
AGAATAGCGGAGGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAG
CAGTAGTAGTAGGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACA
TTGGCGCTAGCACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAG
GTGGAGAAAGGAGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAA
GAAGAAGCTCCGCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTT
ACCAAAGACCCGTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCC
AAGCCTCACCTCCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTT
TTGTATTGACATGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTG
AGATTCGAAGGCCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTAT
GGGATTAAGGATAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACAT
TGACCGGGTGGTGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTG
GGTATAGATGGAGGATGGAGAGGGAGAGATGA
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Synonyms
Publications