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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:968010..969687 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03560.2 vs.
Match: EWM28812.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 204.5 bits (519), Expect = 3.700e-49 Identity = 117/212 (55.19%), Postives = 139/212 (65.57%), Query Frame = 0
Query: 28 NLRSLALVWRAEGGVGKERI---SLPRIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGKVEKGG----DETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEIVR 233
NL +A + RA KE + S+P ++ G L+ C C+ R K TDI A D EA +E GG T S R G KKKLRAIRQHVNPLSSLYQRP ++ WV+ AFA P LPFHIDIGSARGRFCI MARE ++NFLGLEIRRPCVEE+ KKMEKY +KDNVHF+ALN NVD++R+V DV++ SEIVR
Sbjct: 29 NLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSR---CLCAGPQREGGK---KEYTDIHA-LQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVR 233
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03560.2 ID=NO04G03560.2|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGAAGAAGCTCC GCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCC GTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCT CCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACA TGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGG CCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGA TAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGG TGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATAGATGG AGGATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGGCCTTA GGCAGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTGAAGCA AAAGTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTACATCC GTGTCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTTTGCGA CTCTAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAA AAGCGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCT CAAGCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAG CAGAGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTT TGTCCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGA GAGAGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCT TTCGTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTC AGTAGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTA AATTAAATTATGTTTGCTCTCTCAGTTTAGA back to topprotein sequence of NO04G03560.2 >NO04G03560.2-protein ID=NO04G03560.2-protein|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp MPASKAGPWTGFWNSRWPLFLLVSVGMNLRSLALVWRAEGGVGKERISLP RIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGK VEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFA KPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKY GIKDNVHFVALNANVDIDRVVKDVQEQSEIVRCGYRWRMERER* back to topmRNA from alignment at chr4:968010..969687- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03560.2 ID=NO04G03560.2|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at chr4:968010..969687- (Nannochloropsis oceanica) CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA
AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC
AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC
TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG
GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG
TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC
TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT
GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA
GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA
GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC
ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG
AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGTAAAGTCTAA
CTTCGTAGCCGGGGTTCTTGGCACAGCTTTTGATTTATCGAGTTTCCTAT
TCAATCTTACCCAAATATCTCACACATCCATCACAGGAAGAAGCTCCGCG
CCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCCGTG
GATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCTCCC
TTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACATGG
CGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGGCCA
TGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGATAA
TGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGGTGA
AGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATAGATGGAGG
ATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGGCCTTAGGC
AGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTGAAGCAAAA
GTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTACATCCGTG
TCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTTTGCGACTC
TAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAG
CGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAA
GCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAG
AGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGT
CCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAG
AGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTC
GTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTCAGT
AGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTAAAT
TAAATTATGTTTGCTCTCTCAGTTTAGA back to topCoding sequence (CDS) from alignment at chr4:968010..969687- >NO04G03560.2 ID=NO04G03560.2|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr4:968010..969687- (Nannochloropsis oceanica) ATGCCCGCGAGTAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTG GCCTCTCTTCCTTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCC TCGTGTGGCGTGCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCA AGAATAGCGGAGGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAG CAGTAGTAGTAGGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACA TTGGCGCTAGCACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAG GTGGAGAAAGGAGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAA GAAGAAGCTCCGCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTT ACCAAAGACCCGTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCC AAGCCTCACCTCCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTT TTGTATTGACATGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTG AGATTCGAAGGCCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTAT GGGATTAAGGATAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACAT TGACCGGGTGGTGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTG GGTATAGATGGAGGATGGAGAGGGAGAGATGA back to top
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