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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:968010..969687 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03560.1 vs.
Match: EWM28812.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 355.5 bits (911), Expect = 1.800e-94 Identity = 194/313 (61.98%), Postives = 221/313 (70.61%), Query Frame = 0
Query: 28 NLRSLALVWRAEGGVGKERI---SLPRIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGKVEKGG----DETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEIVRYSVQFPDPHFKAKHKKRRMVQPALVAAMCASLKPEGGEILIQSDVLEVAESMREAFAEDELVTDVCPPGEWMEENPLMVPTEREKLTLGRGDPVYRTVFRR 334
NL +A + RA KE + S+P ++ G L+ C C+ R K TDI A D EA +E GG T S R G KKKLRAIRQHVNPLSSLYQRP ++ WV+ AFA P LPFHIDIGSARGRFCI MARE ++NFLGLEIRRPCVEE+ KKMEKY +KDNVHF+ALN NVD++R+V DV++ SEIVRYSVQFPDPHFK KHKKRR++QPALVA MC+SLK +GGEI IQSDV EVA SMR+AF E LV D G WMEENPL VPTERE LTL RGDPVYRTVF R
Sbjct: 29 NLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLKSR---CLCAGPQREGGK---KEYTDIHA-LQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVRYSVQFPDPHFKTKHKKRRVIQPALVACMCSSLKSDGGEIFIQSDVEEVAVSMRDAFKESTLVADASASGAWMEENPLKVPTEREVLTLSRGDPVYRTVFCR 334
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03560.1 ID=NO04G03560.1|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1361bp CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGAAGAAGCTCC GCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCC GTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCT CCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACA TGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGG CCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGA TAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGG TGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATACTCCGTCCAATTC CCCGACCCCCACTTCAAAGCCAAGCACAAAAAGCGGCGCATGGTCCAGCC TGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAAGCCGGAGGGAGGGGAGA TATTGATTCAATCAGACGTGCTGGAGGTAGCAGAGAGCATGCGAGAGGCC TTCGCGGAGGATGAGCTCGTGACTGATGTTTGTCCGCCGGGAGAGTGGAT GGAGGAGAACCCTTTAATGGTGCCGACCGAGAGAGAGAAATTGACGTTGG GAAGAGGGGATCCGGTTTATCGGACTGTCTTTCGTAGGAAAGACAGCAGT TAGATAGGGAGAGTGGGGGAAGGGGTATTCAGTAGCAACACAGATAACGA AAGAGGAGGAACTTAAAGTAGTGCATTTTAAATTAAATTATGTTTGCTCT CTCAGTTTAGA back to topprotein sequence of NO04G03560.1 >NO04G03560.1-protein ID=NO04G03560.1-protein|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp MPASKAGPWTGFWNSRWPLFLLVSVGMNLRSLALVWRAEGGVGKERISLP RIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGK VEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFA KPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKY GIKDNVHFVALNANVDIDRVVKDVQEQSEIVRYSVQFPDPHFKAKHKKRR MVQPALVAAMCASLKPEGGEILIQSDVLEVAESMREAFAEDELVTDVCPP GEWMEENPLMVPTEREKLTLGRGDPVYRTVFRRKDSS* back to topmRNA from alignment at chr4:968010..969687- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03560.1 ID=NO04G03560.1|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at chr4:968010..969687- (Nannochloropsis oceanica) CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA
AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC
AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC
TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG
GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG
TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC
TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT
GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA
GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA
GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC
ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG
AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAGTAAAGTCTAA
CTTCGTAGCCGGGGTTCTTGGCACAGCTTTTGATTTATCGAGTTTCCTAT
TCAATCTTACCCAAATATCTCACACATCCATCACAGGAAGAAGCTCCGCG
CCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCCGTG
GATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCTCCC
TTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACATGG
CGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGGCCA
TGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGATAA
TGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGGTGA
AGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATAGATGGAGG
ATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGGCCTTAGGC
AGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTGAAGCAAAA
GTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTACATCCGTG
TCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTTTGCGACTC
TAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAG
CGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAA
GCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAG
AGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGT
CCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAG
AGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTC
GTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTCAGT
AGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTAAAT
TAAATTATGTTTGCTCTCTCAGTTTAGA back to topCoding sequence (CDS) from alignment at chr4:968010..969687- >NO04G03560.1 ID=NO04G03560.1|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr4:968010..969687- (Nannochloropsis oceanica) ATGCCCGCGAGTAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTG GCCTCTCTTCCTTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCC TCGTGTGGCGTGCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCA AGAATAGCGGAGGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAG CAGTAGTAGTAGGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACA TTGGCGCTAGCACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAG GTGGAGAAAGGAGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAA GAAGAAGCTCCGCGCCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTT ACCAAAGACCCGTGGATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCC AAGCCTCACCTCCCTTTTCACATAGACATTGGATCCGCCCGAGGACGCTT TTGTATTGACATGGCGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTG AGATTCGAAGGCCATGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTAT GGGATTAAGGATAATGTACATTTTGTCGCCTTGAATGCCAATGTGGACAT TGACCGGGTGGTGAAGGACGTGCAAGAGCAGAGCGAGATTGTGCGATACT CCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAGCGGCGC ATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAAGCCGGA GGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAGAGAGCA TGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGTCCGCCG GGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAGAGAGAA ATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTCGTAGGA AAGACAGCAGTTAG back to top
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