NO04G03560, NO04G03560 (gene) Nannochloropsis oceanica

Overview
NameNO04G03560
Unique NameNO04G03560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1678
Alignment locationchr4:968010..969687 -

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Properties
Property NameValue
DescriptionTrna (Guanine-n-)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:968010..969687 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008176tRNA (guanine-N7-)-methyltransferase activity
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006400tRNA modification
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR003358tRNA_(Gua-N-7)_MeTrfase_Trmb
Homology
BLAST of NO04G03560 vs. NCBI_GenBank
Match: EWM28812.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 4.800e-49
Identity = 117/212 (55.19%), Postives = 139/212 (65.57%), Query Frame = 0
Query:   28 NLRSLALVWRAEGGVGKERI---SLPRIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGKVEKGG----DETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEIVR 233
            NL  +A + RA     KE +   S+P ++ G L+     C C+   R       K  TDI A   D  EA      +E GG       T S R G KKKLRAIRQHVNPLSSLYQRP ++   WV+ AFA P LPFHIDIGSARGRFCI MARE  ++NFLGLEIRRPCVEE+ KKMEKY +KDNVHF+ALN NVD++R+V DV++ SEIVR
Sbjct:   29 NLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLK---SRCLCAGPQREG---GKKEYTDIHA-LQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVR 233          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: CEL92745.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 0
Query:  119 KLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQ 226
            K R  R HVNP S  +QRPVDL + W +  F KP LP H+D+GSA G FC+ MA +    N+LG+EIR   VE A+ + +K G + N HF+  N NV++DR++ D++
Sbjct:   75 KFRRPRNHVNPFSPFHQRPVDLEDRWPEKVFEKPSLPLHVDLGSAYGHFCMAMAEKYPSHNYLGVEIRTKVVEHAISQRDKAG-QRNAHFIGCNVNVNLDRILTDIE 180          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: KOO25126.1 (tRNA (guanine-n -)-methyltransferase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 102.4 bits (254), Expect = 2.000e-18
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 0
Query:  114 GGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVK 223
            GG     R IR HVNPL   +Q  + L E W +  FA+P LP H+DIG ARG FC+D+A   +E N LGLEIR    + A +  +++G+  N  F+A NAN ++D +++
Sbjct:    2 GGRSIGKRKIRHHVNPLKDTHQAKLQLEERWPERLFARPELPLHVDIGCARGLFCLDLASSSAEANVLGLEIRAALADAATEDAQRFGL-HNAAFLACNANTNLDEILR 109          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_006528657.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Gloeocapsa sp. PCC 73106] >ELR98507.1 tRNA (guanine-N(7)-)-methyltransferase [Gloeocapsa sp. PCC 73106])

HSP 1 Score: 102.1 bits (253), Expect = 2.600e-18
Identity = 52/122 (42.62%), Postives = 83/122 (68.03%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRV---VKDVQEQSEIVRCGYRWRMER 242
            +RQHVNPLS  YQ+P+ LP+ W    +   + PFH+D+G ARG+F I +A+ ++E+NFLG+EIR+P V++A K++EK G+K NV+F+  NAN  + ++   +  +Q QS  ++    W  +R
Sbjct:    6 VRQHVNPLSFKYQQPIQLPD-W-STVYTNINQPFHLDLGCARGKFLISLAQIQTEMNFLGIEIRQPLVKDATKEVEKLGLK-NVYFLFGNANNYLKQILASIPQLQLQSVTIQFPDPWFKKR 124          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_106920436.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [filamentous cyanobacterium CCP3] >PSR18738.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB [filamentous cyanobacterium CCP3])

HSP 1 Score: 100.5 bits (249), Expect = 7.500e-18
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231
            +RQHVNPLS  YQ PV++P  W  AAFA P  P HIDIG  +G F + MA    E NFLGLEIR+P VE A K+ ++ G+  N+HF+  N N+ +  +++   +Q+ +
Sbjct:   18 VRQHVNPLSGKYQAPVEVP-NW-SAAFATPRQPLHIDIGCGKGVFLLSMAELAPEWNFLGLEIRKPVVESAQKRQQETGL-SNLHFMYCNVNISLRALLEGWGDQNPL 122          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_035992464.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 100.1 bits (248), Expect = 9.800e-18
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231
            +RQHVNPLS  YQ PV +P+ W   AFA P  P HIDIG  +G F + MA+ + E NFLGLEIR+P VE A K+ ++ G+  N+HF+  N N+ +  +++   +Q+ +
Sbjct:    6 VRQHVNPLSERYQAPVAMPD-W-SEAFANPQQPLHIDIGCGKGVFALHMAQLQPEWNFLGLEIRKPVVESAQKRQQEAGL-SNLHFMYCNVNISLRALLESWGDQNPL 110          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_073610617.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Phormidium tenue] >OKH44511.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB [Phormidium tenue NIES-30])

HSP 1 Score: 99.0 bits (245), Expect = 2.200e-17
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0
Query:  123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231
            +RQHVNPLS  YQ PV++P  W  A FA P  P HIDIG A+G F + MA+ + E NFLGLEIR+P VE A K+ ++  +  N+HF+  N N+ +  +++   +Q+ +
Sbjct:    6 VRQHVNPLSGKYQAPVEVP-NW-SAVFANPQQPLHIDIGCAKGVFLLQMAQLQPEWNFLGLEIRKPVVESAQKRQQEAEL-TNLHFMYCNVNISLRSLLESWGDQNPL 110          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: CBJ48289.1 (tRNA (guanine-N(7)-)-methyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 98.6 bits (244), Expect = 2.800e-17
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 0
Query:  107 ETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQE 227
            E  GSP    ++K++  RQHVNPL++ +Q PV LPE W +AAF     P  +DIG A+G F   MA E  E N+LGLEIRRP    AL++    G + N H V  NANVD+D V+ +  +
Sbjct:    2 EKLGSPD---RRKVKT-RQHVNPLAATFQAPVVLPERWFQAAFRDLSAPLLVDIGCAKGSFVRAMATEHPERNYLGLEIRRPTAALALERAAGLGTR-NCHVVCCNANVDLDAVLTEAAQ 116          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: XP_005776409.1 (hypothetical protein EMIHUDRAFT_310327 [Emiliania huxleyi CCMP1516] >EOD23980.1 hypothetical protein EMIHUDRAFT_310327 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 98.6 bits (244), Expect = 2.800e-17
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 0
Query:  116 IKKKLRAIRQHVNPLSSLYQRPVDLPEGW-VKAAFAKPHLPFHIDIGSARGRFCIDMAREKS-EINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVV 222
            +KKK   IR HVNPL  ++ +P+DLPE W  + AF +P LP H+DIG ARG FC+D+A E S   N LGLEIR    E A +   + G+  N  F+  NANV+++ V+
Sbjct:    4 VKKK---IRHHVNPLKDVHMQPLDLPERWPEEGAFTQPDLPLHVDIGCARGLFCLDLAAESSGSANVLGLEIRSALAEAAAEDARRLGVA-NAAFLPCNANVNLEAVL 107          
BLAST of NO04G03560 vs. NCBI_GenBank
Match: XP_005766712.1 (hypothetical protein EMIHUDRAFT_76396 [Emiliania huxleyi CCMP1516] >EOD14283.1 hypothetical protein EMIHUDRAFT_76396 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 97.4 bits (241), Expect = 6.300e-17
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = 0
Query:   76 FCDKSGTDIGASTDDEEEASTTVGKVEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGW-VKAAFAKPHLPFHIDIGSARGRFCIDMAREKS-EINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVV 222
            FC   G  +     D    S T G       +  G    G KKK   IR HVNPL  ++ +P+DLPE W  + AF +P LP H+DIG ARG FC+D+A E S   N LGLEIR    E A +   + G+  N  F+  NANV+++ V+
Sbjct:   15 FCRPRGCPL-LCAPDSPSISPTAGATRSRFGQHQGGRSLGKKKK---IRHHVNPLKDVHMQPLDLPERWPEEGAFTQPDLPLHVDIGCARGLFCLDLAAESSGSANVLGLEIRSALAEAAAEDARRLGVA-NAAFLPCNANVNLEAVL 157          
The following BLAST results are available for this feature:
BLAST of NO04G03560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28812.14.800e-4955.19trna (guanine-n -)-methyltransferase [Nannochlorop... [more]
CEL92745.11.100e-2146.73unnamed protein product [Vitrella brassicaformis C... [more]
KOO25126.12.000e-1843.12tRNA (guanine-n -)-methyltransferase [Chrysochromu... [more]
WP_006528657.12.600e-1842.62tRNA (guanosine(46)-N7)-methyltransferase TrmB [Gl... [more]
WP_106920436.17.500e-1846.30tRNA (guanosine(46)-N7)-methyltransferase TrmB [fi... [more]
WP_035992464.19.800e-1845.37tRNA (guanosine(46)-N7)-methyltransferase TrmB [Le... [more]
WP_073610617.12.200e-1745.37tRNA (guanosine(46)-N7)-methyltransferase TrmB [Ph... [more]
CBJ48289.12.800e-1745.83tRNA (guanine-N(7)-)-methyltransferase [Ectocarpus... [more]
XP_005776409.12.800e-1747.22hypothetical protein EMIHUDRAFT_310327 [Emiliania ... [more]
XP_005766712.16.300e-1740.54hypothetical protein EMIHUDRAFT_76396 [Emiliania h... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009502NSK009502Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03560.2NO04G03560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G03560.1NO04G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579209gene_2133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g34gene1895Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03560.2NO04G03560.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G03560.1NO04G03560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03560 ID=NO04G03560|Name=NO04G03560|organism=Nannochloropsis oceanica|type=gene|length=1678bp
CGGCGCGGAGTTGAACACACCCCCTAATTATTATTGATGGCGTGCGGCGA
AATGTTTCCTTTCCTTTTCCTCCCACAATTGCGAGCAATCTAACTCACAC
AGCACGCGACTAAGACATACAGCCATCACGACAATCGCGAAGACAACCAC
TAAACCACCACCACATCTTTCTTTATTTTCCCTATAATCACCACAGATCG
GCAAGCGAAGTGTCAGCTTCCCGCGCCAATCATCATCACATGCCCGCGAG
TAAAGCTGGGCCCTGGACAGGCTTTTGGAATTCCCGTTGGCCTCTCTTCC
TTCTTGTTAGCGTCGGCATGAATTTGCGAAGTCTAGCCCTCGTGTGGCGT
GCGGAAGGCGGAGTGGGAAAGGAGCGCATTAGCCTTCCAAGAATAGCGGA
GGGGGCGTTGAGGGTTGCTGGACGGCCTTGTTATTGCAGCAGTAGTAGTA
GGGGTAGCGTGGCTTTCTGTGATAAAAGTGGTACCGACATTGGCGCTAGC
ACCGATGATGAGGAGGAGGCTTCCACCACCGTTGGCAAGGTGGAGAAAGG
AGGCGACGAGACGACGGGTTCCCCCCGTGGCGGCATCAAgtaaagtctaa
cttcgtagccggggttcttggcacagcttttgatttatcgagtttcctat
tcaatcttacccaaatatctcacacatccatcacagGAAGAAGCTCCGCG
CCATTCGGCAGCACGTCAACCCACTGTCCTCCCTTTACCAAAGACCCGTG
GATCTACCTGAAGGTTGGGTCAAGGCAGCTTTCGCCAAGCCTCACCTCCC
TTTTCACATAGACATTGGATCCGCCCGAGGACGCTTTTGTATTGACATGG
CGCGCGAAAAGTCGGAGATAAATTTCTTGGGGCTTGAGATTCGAAGGCCA
TGTGTAGAAGAGGCGTTGAAGAAGATGGAGAAGTATGGGATTAAGGATAA
TGTACATTTTGTCGCCTTGAATGCCAATGTGGACATTGACCGGGTGGTGA
AGGACGTGCAAGAGCAGAGCGAGATTGTGCGATGTGGGTATAGATGGAGG
ATGGAGAGGGAGAGATGAAGAAGGAGGAAGTGGTGAAGTAGGCCTTAGGC
AGACTGTCGAGTCATTTGCCCGCTTGCTCGCGTGCGCGCTTGAAGCAAAA
GTCATCATGCCTTTTCCATTTCTCCCTCCTGTGTGTGTCTTACATCCGTG
TCGATTTAAAAACTCACCGCTCCGCCACAACCCTTCCCTCTTTGCGACTC
TAGACTCCGTCCAATTCCCCGACCCCCACTTCAAAGCCAAGCACAAAAAG
CGGCGCATGGTCCAGCCTGCCTTGGTGGCTGCCATGTGCGCCAGTCTCAA
GCCGGAGGGAGGGGAGATATTGATTCAATCAGACGTGCTGGAGGTAGCAG
AGAGCATGCGAGAGGCCTTCGCGGAGGATGAGCTCGTGACTGATGTTTGT
CCGCCGGGAGAGTGGATGGAGGAGAACCCTTTAATGGTGCCGACCGAGAG
AGAGAAATTGACGTTGGGAAGAGGGGATCCGGTTTATCGGACTGTCTTTC
GTAGGAAAGACAGCAGTTAGATAGGGAGAGTGGGGGAAGGGGTATTCAGT
AGCAACACAGATAACGAAAGAGGAGGAACTTAAAGTAGTGCATTTTAAAT
TAAATTATGTTTGCTCTCTCAGTTTAGA
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protein sequence of NO04G03560.2

>NO04G03560.2-protein ID=NO04G03560.2-protein|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPASKAGPWTGFWNSRWPLFLLVSVGMNLRSLALVWRAEGGVGKERISLP
RIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGK
VEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFA
KPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKY
GIKDNVHFVALNANVDIDRVVKDVQEQSEIVRCGYRWRMERER*
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protein sequence of NO04G03560.1

>NO04G03560.1-protein ID=NO04G03560.1-protein|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MPASKAGPWTGFWNSRWPLFLLVSVGMNLRSLALVWRAEGGVGKERISLP
RIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGK
VEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFA
KPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKY
GIKDNVHFVALNANVDIDRVVKDVQEQSEIVRYSVQFPDPHFKAKHKKRR
MVQPALVAAMCASLKPEGGEILIQSDVLEVAESMREAFAEDELVTDVCPP
GEWMEENPLMVPTEREKLTLGRGDPVYRTVFRRKDSS*
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Synonyms
Publications