NO04G03550, NO04G03550 (gene) Nannochloropsis oceanica

Overview
NameNO04G03550
Unique NameNO04G03550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length994
Alignment locationchr4:966994..967987 +

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Properties
Property NameValue
DescriptiontRNA/rRNA methyltransferase, SpoU
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:966994..967987 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
Homology
BLAST of NO04G03550 vs. NCBI_GenBank
Match: EWM28734.1 (tRNA/rRNA methyltransferase, SpoU [Nannochloropsis gaditana])

HSP 1 Score: 281.6 bits (719), Expect = 2.500e-72
Identity = 150/250 (60.00%), Postives = 172/250 (68.80%), Query Frame = 0
Query:   12 KESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQE------------GGKGEEEGEGWPDLWGADDYSSK 250
            KE       MVAIEV++KTNAGT VRCSVAFG   LCLVGVGRPRFSKHGSFGSHHYL TR+F+SW+ALRQ ADN+K+ VIGV    A  + SV  RPF G TIFV+ T+GKTLT EQ  ACH LVHV + GGPA +A FS  GGGLTL+ DVALS+VLHHFTAWS+   HRF GQKYV GQ  + G+ + EEQ RL+ ERRQQR  ADILSQ E              + EE+   W   WG    + K
Sbjct:   13 KEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK 262          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: PNW83678.1 (hypothetical protein CHLRE_05g238950v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 0
Query:    1 MEASPPQQDNKK------------ESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRT 198
            ME S    DN++             + GP   ++   V ++ N GT VR + AFG   +CL  VG  +F+  GS GS  +++ R F +     QH  + +  RV+GV  E    +L V + PF GPT F+   +G+ +T+ Q A C   V++P  G            G  +L   VA S+VLHHF  W+     + +G K+V+ + P RT
Sbjct:    1 MEPSQASNDNERVAEAGSSAAEAPSTSGPASYIITHSVSKRHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQHLKEVEGCRVLGV--EICEGALPVQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQHG-----------AGTASLNVAVAASIVLHHFAIWAAYPERQREGYKFVVAEKPQRT 196          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_002953134.1 (hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] >EFJ45733.1 hypothetical protein VOLCADRAFT_63297, partial [Volvox carteri f. nagariensis])

HSP 1 Score: 95.9 bits (237), Expect = 2.000e-16
Identity = 63/176 (35.80%), Postives = 92/176 (52.27%), Query Frame = 0
Query:   16 GPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNG--PTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWS---QREAHRFQ 186
            GPP  ++   V ++ N GT VR + AFG   +CL  VG  +F+  GS GS  +++ + F + +   QH  D +  RV+G+  E    +L VH+ PF G  PT F+   +G+ L+E Q A C   V++P   GP          G  +L   VA S+VLHHF  W    +RE H F+
Sbjct:   21 GPPCFIITHSVSKRHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFKHFDTLQQCVQHLKDVEGCRVLGI--EICEGALPVHEHPFTGSSPTAFLLGNEGQGLSERQMALCDGFVYIP-QHGP----------GTASLNVAVAASIVLHHFAVWGAYPERERHGFK 181          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: GAX79628.1 (hypothetical protein CEUSTIGMA_g7069.t1 [Chlamydomonas eustigma])

HSP 1 Score: 94.7 bits (234), Expect = 4.400e-16
Identity = 62/197 (31.47%), Postives = 99/197 (50.25%), Query Frame = 0
Query:    1 MEASPPQQ----DNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWK-ALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG 193
            M+A  P++        +  GP   ++   V ++ N GT  RC+ AFG   +CL  VG  +F+  GS GS  Y+    + + +  + Q  + +   ++GV  E    +L VH  PF+G T F+   +G+ L+ +Q A C   V++P   GP          G  +L   VA S+VLHHF  W++ +    QGQK+V+G
Sbjct:    1 MQALDPKEQASTSGNDQDGGPDCYVILHSVAKRHNVGTIARCATAFGVKEMCL--VGSRQFNTFGSHGSDAYVDIGHYQTLELCVIQLKEEKGCEIVGV--EIVEGALPVHSHPFSGSTAFMLGNEGQGLSPKQLALCDRFVYIP-QHGP----------GTASLNVAVACSIVLHHFALWAKYDERERQGQKFVVG 182          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: PSC75588.1 (family tRNA rRNA methyltransferase [Micractinium conductrix])

HSP 1 Score: 94.4 bits (233), Expect = 5.700e-16
Identity = 73/214 (34.11%), Postives = 102/214 (47.66%), Query Frame = 0
Query:   17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSS----WKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG-QPGRTG-----EVDKEEQQRLQAERRQQRQVAD 221
            P   ++   V +K N GT  RC+ AF  A +CL  VG  +F+  G+ G+  Y+S    SS      +LRQ   N+   ++GV  E    +  VH  PF G T F+   +G+ L E Q A C   +++P  G            G  +L   VA S+VLHHF  W+  E    +GQK+VLG +P RT       +  EEQ   +A RRQ     D
Sbjct:   45 PRSWLIQYNVSKKHNIGTLARCATAFNVAEVCL--VGSRQFNSFGAHGADSYVSFSHHSSLDECCASLRQ---NKGCTIVGV--EIVEGARPVHNFPFRGNTAFMLGNEGQGLNERQVALCDEFIYIPQYG-----------PGTASLNVAVAASIVLHHFALWAGYEERAREGQKFVLGDRPQRTAARGVVPLTAEEQAAERARRRQSAADGD 240          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_001697715.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 93.2 bits (230), Expect = 1.300e-15
Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 0
Query:   21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRT 198
            ++   V ++ N GT VR + AFG   +CL  VG  +F+  GS GS  +++ R F +     QH  + +  RV+GV  E    +L V + PF GPT F+   +G+ +T+ Q A C   V++P  G            G  +L   VA S+VLHHF  W+     + +G K+V+ + P RT
Sbjct:    3 IITHSVSKRHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQHLKEVEGCRVLGV--EICEGALPVQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQHG-----------AGTASLNVAVAASIVLHHFAIWAAYPERQREGYKFVVAEKPQRT 166          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_005647853.1 (hypothetical protein COCSUDRAFT_66262 [Coccomyxa subellipsoidea C-169] >EIE23309.1 hypothetical protein COCSUDRAFT_66262 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 93.2 bits (230), Expect = 1.300e-15
Identity = 70/221 (31.67%), Postives = 108/221 (48.87%), Query Frame = 0
Query:   17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQK-YRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRTGEVD----KEEQQRLQAERRQQRQVA----DILSQQEG 228
            P   ++   V ++ N GT VR + AF    +CLVG    +F+  GS GS  Y++ R F S +    +    K  R++GV  E A ++  +H  PF+GPT F+   +G  L+ +Q   C + V++P  G            G  +L   VA S+VL HF AW+        G KY +G+ P RTG        EE++  + ERR +++ A    D+L   +G
Sbjct:   28 PGCYLIVHNVSKRHNIGTLVRSAAAFSVTEVCLVGA--RQFNTFGSHGSADYVNYRHFPSLQECCHYLKQDKGCRIMGV--EIAEDAQPIHAHPFSGPTAFMLGNEGSGLSPQQVQLCDAFVYIPQYG-----------AGTASLNVTVAASIVLQHFAAWAGYAERPRSGAKYDVGERPPRTGARGTVPLTEEERAAERERRLKKKAAANGHDVLQGSDG 233          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: GAX86423.1 (hypothetical protein CEUSTIGMA_g13833.t1 [Chlamydomonas eustigma])

HSP 1 Score: 91.7 bits (226), Expect = 3.700e-15
Identity = 61/197 (30.96%), Postives = 98/197 (49.75%), Query Frame = 0
Query:    1 MEASPPQQ----DNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWK-ALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG 193
            M+A  P++        +  GP   ++   V ++ N GT  RC+ AFG   +CL  VG  +F+  GS GS  Y+    + + +  + Q  + +   ++GV  E    +L VH  PF+  T F+   +G+ L+ +Q A C   V++P   GP          G  +L   VA S+VLHHF  W++ +    QGQK+V+G
Sbjct:    1 MQALDPKEHASTSGNDQDGGPDCYVILHSVAKRHNVGTIARCATAFGVKEMCL--VGSRQFNTFGSHGSDAYVDIGHYQTLELCVIQLKEEKGCEIVGV--EIVEGALPVHSHPFSRSTAFMLGNEGQGLSPKQLALCDRFVYIP-QHGP----------GTASLNVAVACSIVLHHFALWAKYDERERQGQKFVVG 182          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_011400754.1 (tRNA (guanosine(18)-2'-O)-methyltransferase [Auxenochlorella protothecoides] >KFM27767.1 tRNA (guanosine(18)-2'-O)-methyltransferase [Auxenochlorella protothecoides])

HSP 1 Score: 91.3 bits (225), Expect = 4.900e-15
Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 0
Query:   17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQK-YRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVL 192
            P   ++   V +K N GT  RC+ AF    +CLVG    RF+  GS GS  ++     +S +A  Q    +K  +++GV  E    +L VH  PF GPT F+   +G+ L+E Q   C + +++P  G            G  +L   VA S+VLHHF  W+       +GQK+++
Sbjct:    4 PESYVILHNVSKKHNVGTISRCATAFNVTQICLVGSN--RFNAFGSHGSDAHVDFGWHASIEACCQELREEKGAQIVGV--EIMPSALPVHSFPFRGPTAFMLGNEGQGLSERQIRNCDAFIYIPQYG-----------AGTASLNVAVAASIVLHHFALWAGFPERGREGQKFIV 164          
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_001415856.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO94148.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-14
Identity = 64/217 (29.49%), Postives = 108/217 (49.77%), Query Frame = 0
Query:   22 VAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQK--YRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRT---GEVDKEEQQRLQAERRQQRQVADILSQQEGGKGEE 233
            +A  V +K N GT  RC  AFG   L L  +G  +F+  GS G+  ++    F S +  R+    ++   +++GV  E   ++ ++   PF G T F+   +G  +TE Q+A C   V++P  G            G  +L   VA S+V+HHF +W+  E    +G+K+++ + P RT   GEV +  +Q      R +R  A  L +++  +GE+
Sbjct:    4 LAHNVAKKHNIGTMARCCTAFGVKSLVL--IGSRQFNTFGSHGADGHVHFEHFDSLEEAREKLKGERGCTQILGV--EIVDDARAIESHPFTGNTAFIMGNEGHGMTEAQKAICDGFVYIPQYG-----------PGTASLNVSVAASIVMHHFASWAGYEERSREGEKFIVAERPQRTRKRGEVGESPEQ-----VRARRAAARALDKEQETRGED 200          
The following BLAST results are available for this feature:
BLAST of NO04G03550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28734.12.500e-7260.00tRNA/rRNA methyltransferase, SpoU [Nannochloropsis... [more]
PNW83678.11.200e-1631.75hypothetical protein CHLRE_05g238950v5 [Chlamydomo... [more]
XP_002953134.12.000e-1635.80hypothetical protein VOLCADRAFT_63297 [Volvox cart... [more]
GAX79628.14.400e-1631.47hypothetical protein CEUSTIGMA_g7069.t1 [Chlamydom... [more]
PSC75588.15.700e-1634.11family tRNA rRNA methyltransferase [Micractinium c... [more]
XP_001697715.11.300e-1533.52predicted protein, partial [Chlamydomonas reinhard... [more]
XP_005647853.11.300e-1531.67hypothetical protein COCSUDRAFT_66262 [Coccomyxa s... [more]
GAX86423.13.700e-1530.96hypothetical protein CEUSTIGMA_g13833.t1 [Chlamydo... [more]
XP_011400754.14.900e-1532.39tRNA (guanosine(18)-2'-O)-methyltransferase [Auxen... [more]
XP_001415856.11.400e-1429.49predicted protein [Ostreococcus lucimarinus CCE990... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03550.1NO04G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579207gene_2132Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g35gene1894Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03550.1NO04G03550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03550 ID=NO04G03550|Name=NO04G03550|organism=Nannochloropsis oceanica|type=gene|length=994bp
ATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAATCCCAGGGGCC
GCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGgtgagatggtgta
agcgcacaaccgacctcccctcccctccccaagttaacaatcccgacgaa
ccatacgacggcagACGAATGCGGGGACGACGGTGCGCTGCAGCGTAGCA
TTTGGCACGGCATGCCTTTGTCTGGTAGGTGTGGGGCGGCCACGCTTTAG
CAAGCATGGGAGCTTTGGAAGTCATCACTACTTGTCCACACGAGCCTTTT
CTAGCTGGAAGGCTTTGCGCCAGCACGCCGACAACCAGAAGTACCGCGTC
ATAGGAGTCTGTCTTGAACGAGCCGTCGAATCATTGTCCGTACACAAACG
GCCATTCAATGGCCCCACCATCTTTGTGACGTCAACTAAAGGCAAGACTC
TGACGGAGGAGCAGAGGGCAGCTTGCCACTCACTCGTGCACGTTCCTATC
ATGGGCGGGCCCGCGGCAAATGCTGTGTTCAGTCCTTCCGGCGGTGGGCT
GACCTTAGAGGCAGATGTGGCCTTGTCTGTCGTGTTGCATCACTTTACCG
CTTGGAGCCAAAGAGAGGCACACAGgtgggttgatggtggggttggggaa
aatggagcttcgtgtgtgcgtctaagctcacgtgagcggatacgatatgt
gcaacctttccgttcctccaaccctttttttaaaataatataattcgcct
ttgacacagGTTTCAGGGCCAGAAATACGTGCTCGGTCAGCCAGGGAGGA
CAGGCGAGGTGGACAAAGAAGAGCAGCAACGACTGCAAGCAGAGAGGCGA
CAGCAACGGCAGGTAGCGGATATTTTGTCGCAACAGGAAGGGGGGAAAGG
GGAGGAGGAAGGGGAGGGGTGGCCGGATTTGTGGGGAGCTGACGACTATA
GCTCGAAAGAGGAGGAAAGGAAAGTAACCAATTCGTGTACGTGA
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protein sequence of NO04G03550.1

>NO04G03550.1-protein ID=NO04G03550.1-protein|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MEASPPQQDNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLV
GVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAV
ESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAV
FSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQPGRTGEV
DKEEQQRLQAERRQQRQVADILSQQEGGKGEEEGEGWPDLWGADDYSSKE
EERKVTNSCT*
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Synonyms
Publications