NO04G03550.1, NO04G03550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03550.1
Unique NameNO04G03550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length783
Alignment locationchr4:966994..967987 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:966994..967987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03550.1 vs.
Match: EWM28734.1 (tRNA/rRNA methyltransferase, SpoU [Nannochloropsis gaditana])

HSP 1 Score: 281.6 bits (719), Expect = 2.500e-72
Identity = 150/250 (60.00%), Postives = 172/250 (68.80%), Query Frame = 0 
Query:   12 KESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQE------------GGKGEEEGEGWPDLWGADDYSSK 250
            KE       MVAIEV++KTNAGT VRCSVAFG   LCLVGVGRPRFSKHGSFGSHHYL TR+F+SW+ALRQ ADN+K+ VIGV    A  + SV  RPF G TIFV+ T+GKTLT EQ  ACH LVHV + GGPA +A FS  GGGLTL+ DVALS+VLHHFTAWS+   HRF GQKYV GQ  + G+ + EEQ RL+ ERRQQR  ADILSQ E              + EE+   W   WG    + K
Sbjct:   13 KEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK 262
The following BLAST results are available for this feature:
BLAST of NO04G03550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28734.12.500e-7260.00tRNA/rRNA methyltransferase, SpoU [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03550NO04G03550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03550.1NO04G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03550.1.cds1NO04G03550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03550.1.cds2NO04G03550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03550.1.cds3NO04G03550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03550.1 ID=NO04G03550.1|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
ATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAATCCCAGGGGCC
GCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGACGAATGCGGGGA
CGACGGTGCGCTGCAGCGTAGCATTTGGCACGGCATGCCTTTGTCTGGTA
GGTGTGGGGCGGCCACGCTTTAGCAAGCATGGGAGCTTTGGAAGTCATCA
CTACTTGTCCACACGAGCCTTTTCTAGCTGGAAGGCTTTGCGCCAGCACG
CCGACAACCAGAAGTACCGCGTCATAGGAGTCTGTCTTGAACGAGCCGTC
GAATCATTGTCCGTACACAAACGGCCATTCAATGGCCCCACCATCTTTGT
GACGTCAACTAAAGGCAAGACTCTGACGGAGGAGCAGAGGGCAGCTTGCC
ACTCACTCGTGCACGTTCCTATCATGGGCGGGCCCGCGGCAAATGCTGTG
TTCAGTCCTTCCGGCGGTGGGCTGACCTTAGAGGCAGATGTGGCCTTGTC
TGTCGTGTTGCATCACTTTACCGCTTGGAGCCAAAGAGAGGCACACAGGT
TTCAGGGCCAGAAATACGTGCTCGGTCAGCCAGGGAGGACAGGCGAGGTG
GACAAAGAAGAGCAGCAACGACTGCAAGCAGAGAGGCGACAGCAACGGCA
GGTAGCGGATATTTTGTCGCAACAGGAAGGGGGGAAAGGGGAGGAGGAAG
GGGAGGGGTGGCCGGATTTGTGGGGAGCTGACGACTATAGCTCGAAAGAG
GAGGAAAGGAAAGTAACCAATTCGTGTACGTGA
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protein sequence of NO04G03550.1

>NO04G03550.1-protein ID=NO04G03550.1-protein|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MEASPPQQDNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLV
GVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAV
ESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAV
FSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQPGRTGEV
DKEEQQRLQAERRQQRQVADILSQQEGGKGEEEGEGWPDLWGADDYSSKE
EERKVTNSCT*
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mRNA from alignment at chr4:966994..967987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03550.1 ID=NO04G03550.1|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=994bp|location=Sequence derived from alignment at chr4:966994..967987+ (Nannochloropsis oceanica)
ATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAATCCCAGGGGCC
GCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGGTGAGATGGTGTA
AGCGCACAACCGACCTCCCCTCCCCTCCCCAAGTTAACAATCCCGACGAA
CCATACGACGGCAGACGAATGCGGGGACGACGGTGCGCTGCAGCGTAGCA
TTTGGCACGGCATGCCTTTGTCTGGTAGGTGTGGGGCGGCCACGCTTTAG
CAAGCATGGGAGCTTTGGAAGTCATCACTACTTGTCCACACGAGCCTTTT
CTAGCTGGAAGGCTTTGCGCCAGCACGCCGACAACCAGAAGTACCGCGTC
ATAGGAGTCTGTCTTGAACGAGCCGTCGAATCATTGTCCGTACACAAACG
GCCATTCAATGGCCCCACCATCTTTGTGACGTCAACTAAAGGCAAGACTC
TGACGGAGGAGCAGAGGGCAGCTTGCCACTCACTCGTGCACGTTCCTATC
ATGGGCGGGCCCGCGGCAAATGCTGTGTTCAGTCCTTCCGGCGGTGGGCT
GACCTTAGAGGCAGATGTGGCCTTGTCTGTCGTGTTGCATCACTTTACCG
CTTGGAGCCAAAGAGAGGCACACAGGTGGGTTGATGGTGGGGTTGGGGAA
AATGGAGCTTCGTGTGTGCGTCTAAGCTCACGTGAGCGGATACGATATGT
GCAACCTTTCCGTTCCTCCAACCCTTTTTTTAAAATAATATAATTCGCCT
TTGACACAGGTTTCAGGGCCAGAAATACGTGCTCGGTCAGCCAGGGAGGA
CAGGCGAGGTGGACAAAGAAGAGCAGCAACGACTGCAAGCAGAGAGGCGA
CAGCAACGGCAGGTAGCGGATATTTTGTCGCAACAGGAAGGGGGGAAAGG
GGAGGAGGAAGGGGAGGGGTGGCCGGATTTGTGGGGAGCTGACGACTATA
GCTCGAAAGAGGAGGAAAGGAAAGTAACCAATTCGTGTACGTGA
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Coding sequence (CDS) from alignment at chr4:966994..967987+

>NO04G03550.1 ID=NO04G03550.1|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at chr4:966994..967987+ (Nannochloropsis oceanica)
ATGGAGGCATCGCCACCACAACAGGACAATAAAAAGGAATCCCAGGGGCC
GCCGCACTTGATGGTTGCCATCGAGGTGGACAGAAAGACGAATGCGGGGA
CGACGGTGCGCTGCAGCGTAGCATTTGGCACGGCATGCCTTTGTCTGGTA
GGTGTGGGGCGGCCACGCTTTAGCAAGCATGGGAGCTTTGGAAGTCATCA
CTACTTGTCCACACGAGCCTTTTCTAGCTGGAAGGCTTTGCGCCAGCACG
CCGACAACCAGAAGTACCGCGTCATAGGAGTCTGTCTTGAACGAGCCGTC
GAATCATTGTCCGTACACAAACGGCCATTCAATGGCCCCACCATCTTTGT
GACGTCAACTAAAGGCAAGACTCTGACGGAGGAGCAGAGGGCAGCTTGCC
ACTCACTCGTGCACGTTCCTATCATGGGCGGGCCCGCGGCAAATGCTGTG
TTCAGTCCTTCCGGCGGTGGGCTGACCTTAGAGGCAGATGTGGCCTTGTC
TGTCGTGTTGCATCACTTTACCGCTTGGAGCCAAAGAGAGGCACACAGGT
TTCAGGGCCAGAAATACGTGCTCGGTCAGCCAGGGAGGACAGGCGAGGTG
GACAAAGAAGAGCAGCAACGACTGCAAGCAGAGAGGCGACAGCAACGGCA
GGTAGCGGATATTTTGTCGCAACAGGAAGGGGGGAAAGGGGAGGAGGAAG
GGGAGGGGTGGCCGGATTTGTGGGGAGCTGACGACTATAGCTCGAAAGAG
GAGGAAAGGAAAGTAACCAATTCGTGTACGTGA
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Synonyms
Publications