NO04G03540, NO04G03540 (gene) Nannochloropsis oceanica

Overview
NameNO04G03540
Unique NameNO04G03540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length783
Alignment locationchr4:965891..966673 -

Link to JBrowse

Properties
Property NameValue
DescriptionFUN14 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:965891..966673 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007014FUN14
Homology
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BLAST of NO04G03540 vs. NCBI_GenBank
Match: EWM28781.1 (FUN14 family protein [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 2.800e-23
Identity = 89/203 (43.84%), Postives = 116/203 (57.14%), Query Frame = 0 
Query:   10 RTKKRARTSAVFALVSASILIILLLLAVPGRHVAHAISPSRLLASFASQQQQRATMTGRVGSRGRSAAAAFXXXXXXXXXTSAPYAPNGGRRGLAGGSSGCSRAGIGPP---PDNTAFVATGNDGGLGEFWGLRDGSRDMLSRRPQDMASNMGVSGLGGIAAGYVAKRFGKFLSFACGFMLVSMKVAEEFGYVAVNWEKIEDD 210
            R  +R RT A  + +  ++    LL+A     +A A+SP+RLL +F  QQQQ      R G         +          SA  A NG        SS   R  +  P    +  AF+  G+ GGL + WG+ +G+R  LSR+   +AS+MG+SGLGG+AAGY AKRFG+ LSFACGF+LVSMKVAEE GYVAV+WEKIE D
Sbjct:   34 RRPRRVRTPARLSTL-ITLWGFALLMARSTDLIADAVSPARLLKTFVEQQQQH-----REGLIKTKWDGNYCSGPASLSTRSALRARNGMISASTCASSVKKR--VERPIRIVERRAFIGGGDGGGLTDVWGVSNGNRG-LSRQVSCLASDMGLSGLGGMAAGYAAKRFGRLLSFACGFVLVSMKVAEELGYVAVDWEKIEGD 227
The following BLAST results are available for this feature:
BLAST of NO04G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28781.12.800e-2343.84FUN14 family protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009500NSK009500Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03540.1NO04G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579203gene_2131Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g36gene1893Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03540.1NO04G03540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03540 ID=NO04G03540|Name=NO04G03540|organism=Nannochloropsis oceanica|type=gene|length=783bp
ATGTCGATTGCAGCTTCGAAAGCCACGAGGACAAAGAAGCGGGCCCGAAC
AAGCGCTGTTTTTGCCTTAGTGTCCGCCTCTATCCTCATCATTCTTCTCC
TCCTAGCGGTACCCGGTCGCCACGTCGCGCATGCTATCTCTCCGTCCCGA
CTGCTGGCTTCGTTTGCCAGCCAGCAACAACAACGTGCCACAATGACAGG
GCGGGTGGGTAGCCGGGGCCGATCGGCAGCAGCCGCCTTTCGCAGTGCCG
CGGCAGCAGGGTCAAAAACGTCTGCACCCTATGCACCTAATGGTGGAAGG
CGAGGGCTGGCTGGGGGCAGCAGTGGCTGCAGCAGAGCAGGCATCGGCCC
ACCGCCAGACAACACTGCGTTCGTTGCAACAGGCAACGACGGCGGTTTGG
GGGAGTTCTGGGGCCTCCGGGATGGGAGCCGGGACATGTTGTCCAGGCGT
CCGCAGGATATGGCTAGCAACATGGGTGTAAGTGGATTAGGAGGGATTGC
CGCAGGTTATGTAGCAAAGAGGTTTGGGAAATTTTTGAGTTTCGCATGTG
GGTTTATGTTGGTGTCGATGAAGGTGGCGGAGGAATTCGGGTATGTGGCG
GTGAATTGGGAGAAGATTGAGGATGATGTGCATTCGTTTGGAGAAAGTGC
ATGGGGGCGGCAGGGGAAGGTGCGATTGAAGGCGGAGAAACTGGCAAAGT
CGTGGCAGAATGAGCTAGGGTGGAATGCGAGCATTGCAGGGTCATTTCTA
GCGGGCTTTGCGTACGCCTTCAAATCCACTTAA
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protein sequence of NO04G03540.1

>NO04G03540.1-protein ID=NO04G03540.1-protein|Name=NO04G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MSIAASKATRTKKRARTSAVFALVSASILIILLLLAVPGRHVAHAISPSR
LLASFASQQQQRATMTGRVGSRGRSAAAAFRSAAAAGSKTSAPYAPNGGR
RGLAGGSSGCSRAGIGPPPDNTAFVATGNDGGLGEFWGLRDGSRDMLSRR
PQDMASNMGVSGLGGIAAGYVAKRFGKFLSFACGFMLVSMKVAEEFGYVA
VNWEKIEDDVHSFGESAWGRQGKVRLKAEKLAKSWQNELGWNASIAGSFL
AGFAYAFKST*
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Synonyms
Publications