NO04G03540.1, NO04G03540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03540.1
Unique NameNO04G03540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length783
Alignment locationchr4:965891..966673 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:965891..966673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03540.1 vs.
Match: EWM28781.1 (FUN14 family protein [Nannochloropsis gaditana])

HSP 1 Score: 117.1 bits (292), Expect = 8.300e-23
Identity = 92/203 (45.32%), Postives = 120/203 (59.11%), Query Frame = 0 
Query:   10 RTKKRARTSAVFALVSASILIILLLLAVPGRHVAHAISPSRLLASFASQQQQRATMTGRVGSRGRSAAAAFRSAAAAGSKTSAPYAPNGGRRGLAGGSSGCSRAGIGPP---PDNTAFVATGNDGGLGEFWGLRDGSRDMLSRRPQDMASNMGVSGLGGIAAGYVAKRFGKFLSFACGFMLVSMKVAEEFGYVAVNWEKIEDD 210
            R  +R RT A  + +  ++    LL+A     +A A+SP+RLL +F  QQQQ      R G         + S  A+ S  SA  A NG        SS   R  +  P    +  AF+  G+ GGL + WG+ +G+R  LSR+   +AS+MG+SGLGG+AAGY AKRFG+ LSFACGF+LVSMKVAEE GYVAV+WEKIE D
Sbjct:   34 RRPRRVRTPARLSTL-ITLWGFALLMARSTDLIADAVSPARLLKTFVEQQQQH-----REGLIKTKWDGNYCSGPASLSTRSALRARNGMISASTCASSVKKR--VERPIRIVERRAFIGGGDGGGLTDVWGVSNGNRG-LSRQVSCLASDMGLSGLGGMAAGYAAKRFGRLLSFACGFVLVSMKVAEELGYVAVDWEKIEGD 227
The following BLAST results are available for this feature:
BLAST of NO04G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28781.18.300e-2345.32FUN14 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03540NO04G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03540.1NO04G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03540.1.cds1NO04G03540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03540.1 ID=NO04G03540.1|Name=NO04G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
ATGTCGATTGCAGCTTCGAAAGCCACGAGGACAAAGAAGCGGGCCCGAAC
AAGCGCTGTTTTTGCCTTAGTGTCCGCCTCTATCCTCATCATTCTTCTCC
TCCTAGCGGTACCCGGTCGCCACGTCGCGCATGCTATCTCTCCGTCCCGA
CTGCTGGCTTCGTTTGCCAGCCAGCAACAACAACGTGCCACAATGACAGG
GCGGGTGGGTAGCCGGGGCCGATCGGCAGCAGCCGCCTTTCGCAGTGCCG
CGGCAGCAGGGTCAAAAACGTCTGCACCCTATGCACCTAATGGTGGAAGG
CGAGGGCTGGCTGGGGGCAGCAGTGGCTGCAGCAGAGCAGGCATCGGCCC
ACCGCCAGACAACACTGCGTTCGTTGCAACAGGCAACGACGGCGGTTTGG
GGGAGTTCTGGGGCCTCCGGGATGGGAGCCGGGACATGTTGTCCAGGCGT
CCGCAGGATATGGCTAGCAACATGGGTGTAAGTGGATTAGGAGGGATTGC
CGCAGGTTATGTAGCAAAGAGGTTTGGGAAATTTTTGAGTTTCGCATGTG
GGTTTATGTTGGTGTCGATGAAGGTGGCGGAGGAATTCGGGTATGTGGCG
GTGAATTGGGAGAAGATTGAGGATGATGTGCATTCGTTTGGAGAAAGTGC
ATGGGGGCGGCAGGGGAAGGTGCGATTGAAGGCGGAGAAACTGGCAAAGT
CGTGGCAGAATGAGCTAGGGTGGAATGCGAGCATTGCAGGGTCATTTCTA
GCGGGCTTTGCGTACGCCTTCAAATCCACTTAA
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protein sequence of NO04G03540.1

>NO04G03540.1-protein ID=NO04G03540.1-protein|Name=NO04G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MSIAASKATRTKKRARTSAVFALVSASILIILLLLAVPGRHVAHAISPSR
LLASFASQQQQRATMTGRVGSRGRSAAAAFRSAAAAGSKTSAPYAPNGGR
RGLAGGSSGCSRAGIGPPPDNTAFVATGNDGGLGEFWGLRDGSRDMLSRR
PQDMASNMGVSGLGGIAAGYVAKRFGKFLSFACGFMLVSMKVAEEFGYVA
VNWEKIEDDVHSFGESAWGRQGKVRLKAEKLAKSWQNELGWNASIAGSFL
AGFAYAFKST*
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mRNA from alignment at chr4:965891..966673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03540.1 ID=NO04G03540.1|Name=NO04G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=783bp|location=Sequence derived from alignment at chr4:965891..966673- (Nannochloropsis oceanica)
ATGTCGATTGCAGCTTCGAAAGCCACGAGGACAAAGAAGCGGGCCCGAAC
AAGCGCTGTTTTTGCCTTAGTGTCCGCCTCTATCCTCATCATTCTTCTCC
TCCTAGCGGTACCCGGTCGCCACGTCGCGCATGCTATCTCTCCGTCCCGA
CTGCTGGCTTCGTTTGCCAGCCAGCAACAACAACGTGCCACAATGACAGG
GCGGGTGGGTAGCCGGGGCCGATCGGCAGCAGCCGCCTTTCGCAGTGCCG
CGGCAGCAGGGTCAAAAACGTCTGCACCCTATGCACCTAATGGTGGAAGG
CGAGGGCTGGCTGGGGGCAGCAGTGGCTGCAGCAGAGCAGGCATCGGCCC
ACCGCCAGACAACACTGCGTTCGTTGCAACAGGCAACGACGGCGGTTTGG
GGGAGTTCTGGGGCCTCCGGGATGGGAGCCGGGACATGTTGTCCAGGCGT
CCGCAGGATATGGCTAGCAACATGGGTGTAAGTGGATTAGGAGGGATTGC
CGCAGGTTATGTAGCAAAGAGGTTTGGGAAATTTTTGAGTTTCGCATGTG
GGTTTATGTTGGTGTCGATGAAGGTGGCGGAGGAATTCGGGTATGTGGCG
GTGAATTGGGAGAAGATTGAGGATGATGTGCATTCGTTTGGAGAAAGTGC
ATGGGGGCGGCAGGGGAAGGTGCGATTGAAGGCGGAGAAACTGGCAAAGT
CGTGGCAGAATGAGCTAGGGTGGAATGCGAGCATTGCAGGGTCATTTCTA
GCGGGCTTTGCGTACGCCTTCAAATCCACTTAA
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Coding sequence (CDS) from alignment at chr4:965891..966673-

>NO04G03540.1 ID=NO04G03540.1|Name=NO04G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at chr4:965891..966673- (Nannochloropsis oceanica)
ATGTCGATTGCAGCTTCGAAAGCCACGAGGACAAAGAAGCGGGCCCGAAC
AAGCGCTGTTTTTGCCTTAGTGTCCGCCTCTATCCTCATCATTCTTCTCC
TCCTAGCGGTACCCGGTCGCCACGTCGCGCATGCTATCTCTCCGTCCCGA
CTGCTGGCTTCGTTTGCCAGCCAGCAACAACAACGTGCCACAATGACAGG
GCGGGTGGGTAGCCGGGGCCGATCGGCAGCAGCCGCCTTTCGCAGTGCCG
CGGCAGCAGGGTCAAAAACGTCTGCACCCTATGCACCTAATGGTGGAAGG
CGAGGGCTGGCTGGGGGCAGCAGTGGCTGCAGCAGAGCAGGCATCGGCCC
ACCGCCAGACAACACTGCGTTCGTTGCAACAGGCAACGACGGCGGTTTGG
GGGAGTTCTGGGGCCTCCGGGATGGGAGCCGGGACATGTTGTCCAGGCGT
CCGCAGGATATGGCTAGCAACATGGGTGTAAGTGGATTAGGAGGGATTGC
CGCAGGTTATGTAGCAAAGAGGTTTGGGAAATTTTTGAGTTTCGCATGTG
GGTTTATGTTGGTGTCGATGAAGGTGGCGGAGGAATTCGGGTATGTGGCG
GTGAATTGGGAGAAGATTGAGGATGATGTGCATTCGTTTGGAGAAAGTGC
ATGGGGGCGGCAGGGGAAGGTGCGATTGAAGGCGGAGAAACTGGCAAAGT
CGTGGCAGAATGAGCTAGGGTGGAATGCGAGCATTGCAGGGTCATTTCTA
GCGGGCTTTGCGTACGCCTTCAAATCCACTTAA
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Synonyms
Publications