NO04G03360, NO04G03360 (gene) Nannochloropsis oceanica

Overview
NameNO04G03360
Unique NameNO04G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3557
Alignment locationchr4:925338..928894 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:925338..928894 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
The following BLAST results are available for this feature:
BLAST of NO04G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009481NSK009481Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03360.1NO04G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G03360.2NO04G03360.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579111gene_2111Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g54gene1876Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03360.1NO04G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G03360.2NO04G03360.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03360 ID=NO04G03360|Name=NO04G03360|organism=Nannochloropsis oceanica|type=gene|length=3557bp
ACAGTTTTGCCGGGCCTGCCCTTGTTGAACGAGAAACTTGCGCACACAGG
GACCACCAGCAAAGCGACCAAGCGTCACCGAAAACTTAAGACCCATGGCG
TCGACTTTTCTCCCGAGCAGTAACAGTGCCTTCATGGCGCCGCTACAGCC
TCCCTCGCCGCCTCCGCAGCCCAGCGATGTCCCTATGTCCTCTGCTCGTA
TCCGACTCTCGTATGAGTACGATTCGTACGAGGATGGGCCCTCGCCTGAG
TACCACGAAGTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGCAGCAGCAGCATGTCTCGCACCAGCCTGCCT
CGGTCGGTACCAACGCAAAGAATGAGAGCACGAACTTCACACACGACGAC
TATGAATGGCTACACAACATCGACGAGGAGGTTCGGCGGCGCCATGAGGA
ACTGACCCGTGTCCGAGAAGCCAGTAAGGCCTCCGTGCATTTGTTGGAAA
ACAAGGCGCGGAGTGGACTGAGCCCGGCTTTTAGTCCCTCCGTGCAACAC
TTTGTTAGCAACGTGATGGCGCGAGGCACGGTCACATCATTCTTCCCCGG
CGATTCACTGTCCGGGCGCACACCTTCGGGTCCTGACGACGAGCGCACCC
CCACCACGCCGGGCGGGGGGGATTTCCTTCAAACCCCGCGCAGTACGGGT
GGTGGAGCTATCAATGCCAGCTCGTCTTTCCGCACCAAGGGTGCACTGGG
GTTCATCAAGGAAGAGGCCGTTCGCCTACGAGgtaagggaagaatctttg
tgcagaagatttgtgagaaatgacaaggggagggaggaaaggaagggatg
atggttgacgatggcgtatggcctctgtgttgtgcgagcttcagtcgaag
aatatggagcttgggcttatgtgcgagccatctctatctactatgagtca
cgacgtactaatgtatacttactatcctctcattttacccatagCCGACC
TGGAACAGCAAGCGGGCCTGCTTGCAAGCGAAAAGCAATACAACGATCAG
CTCCAGGAAGAGGTGCGAAAGCTTGTCGGGGAGTCGGAGCGCCTGCGGCA
GGAATCAGAGgtaggttgggtagtgtcctgtgtgtgtattttgagcatgg
atgaattacacaccacgtgcaatgtagcaatggtactcacccccccaccc
ctttccatccttacacgtcctcaccgggcacgacagGCTCAACTAGATCA
GCTGCGCCAGGAGCTCGCACGCAAACACCAGGCGTACGAAGAAATGAAAG
AATTTAGCGAGCAGGCTCAAGCCAAGGGACTAGACGCAGAGACGAGGCTG
CAGGCCACTATCGAGGAGATGCAGCGGGTGGCCGCCACGGGCCTGGAGCA
ACAGCAGCAGCAGCAGGGAGAGGAAATCGACGCGGCGGCCCATCCACATT
CCACGTTTGTCTACCAGGAAGAGCAGCTGTTTATCCTAAATCGTCAGGTT
GAGGAGCTGCGCCAGCAAGGCGCCACGGCTGAAGAGACTGCCAGGGCTGC
CACCCAAGCATTGGAGGACGAGCTGCAGCAGCAAAGGGAGGCGACAGACG
CCTACCGGCTCGAGGCGCGGCAGCTCCAATGGAAGTACGATCAGCAGCAG
GTCGAGAAACAGCAGCAGGAAGAAGCAGCAGCAGCAGAGGCAGAGGCAAC
GGTGAAAGGGATGCTTCCCCCAGCTCTTTCTCCGACAACTCCTCTCGGTG
GGTCGGGCGTTGATGCGGAGAGGTTGACGCAGGCATTAGCGGTCTCGGAA
GCAGCGAAAGAAGCGCTTGAGGGGGAGCTTCATCAGCAGCGACTGGACGC
GGAGTGGTATCGGGCGGAGATAAAGCGGCTGCAGCAGAAGCAAAGTCTGG
ACGAAGAGGGACAGGGAGTCGTAGCTCCGCCAGAGACAGGGCAGCGGGGA
GAAGAGGAAGCAGGTGCCCGGCAAGCCGTGGAGGAGTTGCTCCACCAGCA
GCGACGGGAACTGGAATGGTATCGGGCGGAAACGGAGCGGTTACAACAGA
GTCAGGTTGAGGGACAAAGCGCTGTTCTGGCACCGGAAGGGGGCCTGGGA
AGGGACGAGGAAGCGGCTGCCCGGCAAGCGCTGGAGGAGGCGCTTCACCA
GCAGGAAGTCAAGGCGGCGTGGCTACAAAAGGAGATAGAGCAGCTGCGAC
GAGAGCGAGATGAGCAACAGGCTGCAGTGGCGGCGGCCTCAGCAGATGCA
AGCCAGGGGGCAGAGGGGGGAGAGATGGTGCAGATGCTTGAGGGGGAGAT
TCAGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTGAGTTGGAACAGC
ACCGACAAGATAAGGCCCCTATGACCGCAAGGATGACGACGATCGGTGCT
ACCATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCAGGGAGGAACTGA
AGGGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGGAACGACAGACAT
TGGAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGGCAACTGGTCGAG
GGGTTTCAAAAGGTGGAGGGGAAGTTGTCGCGAGTGAAAGAGgtcagttc
actgaagtgctttgttcgtggctttccaaattgaggggatattttgacac
caatatttcttctctcttcctgtttttccacctctttccacagCTCGAGA
GCGAAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCAAAGATGTGTTG
GGCAATGAGCGAGAGAACCACCACAGGCACCTCGAAGATTCCgtaagata
gggaaggcttgggtggggtggattagatcaaagtttgtacctacccgtca
gcgtctcatgtcataacttttcttacttgctcttcgctgtagacctccat
actgttgatatttaatttctcacctgcgctcccctaatcacgcatataca
gTTGTCGGGACTGAAAAACGAGATCGAGCGGCTGGTCGATGAAGTCCAAC
GGCTAGAGGCGGCGGACAAAGAGTTGAGGCTAAAGAAATACAATGAATCG
CTTTTCGTGCTAAAGCGTGTGACGCATAATGTTCTTGCCAAGCAGCAGCT
CAAAACCAAACAGCGTGCGATTTGCCGCTGGGTAACGGCTGTCAATGCGA
TGCAGGGGGAAGAGCTTGTAGCGTTCCGAGAGGCGGCAAAGCAGGCACCA
CAGGCAGAGGAGATCAAGCAGCTAGAGGGCGAGAACAAGGCCTTGCTCGA
GGAGCTGCAGAGGGAGCCGCCCACCCGAGAAGGTGTGATGACAGGGGCAG
TGCGGGGAGGAACATCAGCTCCAGGAGGAAGCGGAATTGCGTCATTTTTG
AGTTTTTGGCTCAAGTTGTTCCTTGTCGGCAGCCTTTTCATGTTCCTGCA
GCAGGTCTTTGCCATGCTGGGTGGGGTTAGTTCCTACTGCTATATGGAAA
CAGCACGTATCACCATGTAATGTATTTTTAAATTCAAAAGTACCGTAGAG
ATATGGAACGGTAGAATAAGGGAGAGAAAAAAGAAAAAATGCTATGTAAA
GTTACTA
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protein sequence of NO04G03360.1

>NO04G03360.1-protein ID=NO04G03360.1-protein|Name=NO04G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=926bp
MASTFLPSSNSAFMAPLQPPSPPPQPSDVPMSSARIRLSYEYDSYEDGPS
PEYHEVQQQQQQQQQQQQQQQQQQLQQQHVSHQPASVGTNAKNESTNFTH
DDYEWLHNIDEEVRRRHEELTRVREASKASVHLLENKARSGLSPAFSPSV
QHFVSNVMARGTVTSFFPGDSLSGRTPSGPDDERTPTTPGGGDFLQTPRS
TGGGAINASSSFRTKGALGFIKEEAVRLRADLEQQAGLLASEKQYNDQLQ
EEVRKLVGESERLRQESEAQLDQLRQELARKHQAYEEMKEFSEQAQAKGL
DAETRLQATIEEMQRVAATGLEQQQQQQGEEIDAAAHPHSTFVYQEEQLF
ILNRQVEELRQQGATAEETARAATQALEDELQQQREATDAYRLEARQLQW
KYDQQQVEKQQQEEAAAAEAEATVKGMLPPALSPTTPLGGSGVDAERLTQ
ALAVSEAAKEALEGELHQQRLDAEWYRAEIKRLQQKQSLDEEGQGVVAPP
ETGQRGEEEAGARQAVEELLHQQRRELEWYRAETERLQQSQVEGQSAVLA
PEGGLGRDEEAAARQALEEALHQQEVKAAWLQKEIEQLRRERDEQQAAVA
AASADASQGAEGGEMVQMLEGEIQRQRELLTSYEAELEQHRQDKAPMTAR
MTTIGATMPLTAPVVGQQQGGTEGQMVSLQPVGDEERQTLESTIQALEEA
NRQLVEGFQKVEGKLSRVKELESENRDLLLLVDELKDVLGNERENHHRHL
EDSLSGLKNEIERLVDEVQRLEAADKELRLKKYNESLFVLKRVTHNVLAK
QQLKTKQRAICRWVTAVNAMQGEELVAFREAAKQAPQAEEIKQLEGENKA
LLEELQREPPTREGVMTGAVRGGTSAPGGSGIASFLSFWLKLFLVGSLFM
FLQQVFAMLGGVSSYCYMETARITM*
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protein sequence of NO04G03360.2

>NO04G03360.2-protein ID=NO04G03360.2-protein|Name=NO04G03360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=756bp
MASTFLPSSNSAFMAPLQPPSPPPQPSDVPMSSARIRLSYEYDSYEDGPS
PEYHEVQQQQQQQQQQQQQQQQQQLQQQHVSHQPASVGTNAKNESTNFTH
DDYEWLHNIDEEVRRRHEELTRVREASKASVHLLENKARSGLSPAFSPSV
QHFVSNVMARGTVTSFFPGDSLSGRTPSGPDDERTPTTPGGGDFLQTPRS
TGGGAINASSSFRTKGALGFIKEEAVRLRADLEQQAGLLASEKQYNDQLQ
EEVRKLVGESERLRQESEAQLDQLRQELARKHQAYEEMKEFSEQAQAKGL
DAETRLQATIEEMQRVAATGLEQQQQQQGEEIDAAAHPHSTFVYQEEQLF
ILNRQVEELRQQGATAEETARAATQALEDELQQQREATDAYRLEARQLQW
KYDQQQVEKQQQEEAAAAEAEATVKGMLPPALSPTTPLGGSGVDAERLTQ
ALAVSEAAKEALEGELHQQRLDAEWYRAEIKRLQQKQSLDEEGQGVVAPP
ETGQRGEEEAGARQAVEELLHQQRRELEWYRAETERLQQSQVEGQSAVLA
PEGGLGRDEEAAARQALEEALHQQEVKAAWLQKEIEQLRRERDEQQAAVA
AASADASQGAEGGEMVQMLEGEIQRQRELLTSYEAELEQHRQDKAPMTAR
MTTIGATMPLTAPVVGQQQGGTEGQMVSLQPVGDEERQTLESTIQALEEA
NRQLVEGFQKVEGKLSRVKELESENRDLLLLVDELKDVLGNERENHHRHL
EDSVR*
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Synonyms
Publications