|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr4 | genome | chr4:925338..928894 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03360.2 ID=NO04G03360.2|Name=NO04G03360.2|organism=Nannochloropsis oceanica|type=mRNA|length=3118bp
ACAGTTTTGCCGGGCCTGCCCTTGTTGAACGAGAAACTTGCGCACACAGG
GACCACCAGCAAAGCGACCAAGCGTCACCGAAAACTTAAGACCCATGGCG
TCGACTTTTCTCCCGAGCAGTAACAGTGCCTTCATGGCGCCGCTACAGCC
TCCCTCGCCGCCTCCGCAGCCCAGCGATGTCCCTATGTCCTCTGCTCGTA
TCCGACTCTCGTATGAGTACGATTCGTACGAGGATGGGCCCTCGCCTGAG
TACCACGAAGTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGCAGCAGCAGCATGTCTCGCACCAGCCTGCCT
CGGTCGGTACCAACGCAAAGAATGAGAGCACGAACTTCACACACGACGAC
TATGAATGGCTACACAACATCGACGAGGAGGTTCGGCGGCGCCATGAGGA
ACTGACCCGTGTCCGAGAAGCCAGTAAGGCCTCCGTGCATTTGTTGGAAA
ACAAGGCGCGGAGTGGACTGAGCCCGGCTTTTAGTCCCTCCGTGCAACAC
TTTGTTAGCAACGTGATGGCGCGAGGCACGGTCACATCATTCTTCCCCGG
CGATTCACTGTCCGGGCGCACACCTTCGGGTCCTGACGACGAGCGCACCC
CCACCACGCCGGGCGGGGGGGATTTCCTTCAAACCCCGCGCAGTACGGGT
GGTGGAGCTATCAATGCCAGCTCGTCTTTCCGCACCAAGGGTGCACTGGG
GTTCATCAAGGAAGAGGCCGTTCGCCTACGAGCCGACCTGGAACAGCAAG
CGGGCCTGCTTGCAAGCGAAAAGCAATACAACGATCAGCTCCAGGAAGAG
GTGCGAAAGCTTGTCGGGGAGTCGGAGCGCCTGCGGCAGGAATCAGAGGC
TCAACTAGATCAGCTGCGCCAGGAGCTCGCACGCAAACACCAGGCGTACG
AAGAAATGAAAGAATTTAGCGAGCAGGCTCAAGCCAAGGGACTAGACGCA
GAGACGAGGCTGCAGGCCACTATCGAGGAGATGCAGCGGGTGGCCGCCAC
GGGCCTGGAGCAACAGCAGCAGCAGCAGGGAGAGGAAATCGACGCGGCGG
CCCATCCACATTCCACGTTTGTCTACCAGGAAGAGCAGCTGTTTATCCTA
AATCGTCAGGTTGAGGAGCTGCGCCAGCAAGGCGCCACGGCTGAAGAGAC
TGCCAGGGCTGCCACCCAAGCATTGGAGGACGAGCTGCAGCAGCAAAGGG
AGGCGACAGACGCCTACCGGCTCGAGGCGCGGCAGCTCCAATGGAAGTAC
GATCAGCAGCAGGTCGAGAAACAGCAGCAGGAAGAAGCAGCAGCAGCAGA
GGCAGAGGCAACGGTGAAAGGGATGCTTCCCCCAGCTCTTTCTCCGACAA
CTCCTCTCGGTGGGTCGGGCGTTGATGCGGAGAGGTTGACGCAGGCATTA
GCGGTCTCGGAAGCAGCGAAAGAAGCGCTTGAGGGGGAGCTTCATCAGCA
GCGACTGGACGCGGAGTGGTATCGGGCGGAGATAAAGCGGCTGCAGCAGA
AGCAAAGTCTGGACGAAGAGGGACAGGGAGTCGTAGCTCCGCCAGAGACA
GGGCAGCGGGGAGAAGAGGAAGCAGGTGCCCGGCAAGCCGTGGAGGAGTT
GCTCCACCAGCAGCGACGGGAACTGGAATGGTATCGGGCGGAAACGGAGC
GGTTACAACAGAGTCAGGTTGAGGGACAAAGCGCTGTTCTGGCACCGGAA
GGGGGCCTGGGAAGGGACGAGGAAGCGGCTGCCCGGCAAGCGCTGGAGGA
GGCGCTTCACCAGCAGGAAGTCAAGGCGGCGTGGCTACAAAAGGAGATAG
AGCAGCTGCGACGAGAGCGAGATGAGCAACAGGCTGCAGTGGCGGCGGCC
TCAGCAGATGCAAGCCAGGGGGCAGAGGGGGGAGAGATGGTGCAGATGCT
TGAGGGGGAGATTCAGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTG
AGTTGGAACAGCACCGACAAGATAAGGCCCCTATGACCGCAAGGATGACG
ACGATCGGTGCTACCATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCA
GGGAGGAACTGAAGGGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGG
AACGACAGACATTGGAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGG
CAACTGGTCGAGGGGTTTCAAAAGGTGGAGGGGAAGTTGTCGCGAGTGAA
AGAGCTCGAGAGCGAAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCA
AAGATGTGTTGGGCAATGAGCGAGAGAACCACCACAGGCACCTCGAAGAT
TCCGTAAGATAGGGAAGGCTTGGGTGGGGTGGATTAGATCAAAGTTTGTA
CCTACCCGTCAGCGTCTCATGTCATAACTTTTCTTACTTGCTCTTCGCTG
TAGACCTCCATACTGTTGATATTTAATTTCTCACCTGCGCTCCCCTAATC
ACGCATATACAGTTGTCGGGACTGAAAAACGAGATCGAGCGGCTGGTCGA
TGAAGTCCAACGGCTAGAGGCGGCGGACAAAGAGTTGAGGCTAAAGAAAT
ACAATGAATCGCTTTTCGTGCTAAAGCGTGTGACGCATAATGTTCTTGCC
AAGCAGCAGCTCAAAACCAAACAGCGTGCGATTTGCCGCTGGGTAACGGC
TGTCAATGCGATGCAGGGGGAAGAGCTTGTAGCGTTCCGAGAGGCGGCAA
AGCAGGCACCACAGGCAGAGGAGATCAAGCAGCTAGAGGGCGAGAACAAG
GCCTTGCTCGAGGAGCTGCAGAGGGAGCCGCCCACCCGAGAAGGTGTGAT
GACAGGGGCAGTGCGGGGAGGAACATCAGCTCCAGGAGGAAGCGGAATTG
CGTCATTTTTGAGTTTTTGGCTCAAGTTGTTCCTTGTCGGCAGCCTTTTC
ATGTTCCTGCAGCAGGTCTTTGCCATGCTGGGTGGGGTTAGTTCCTACTG
CTATATGGAAACAGCACGTATCACCATGTAATGTATTTTTAAATTCAAAA
GTACCGTAGAGATATGGAACGGTAGAATAAGGGAGAGAAAAAAGAAAAAA
TGCTATGTAAAGTTACTA back to topprotein sequence of NO04G03360.2 >NO04G03360.2-protein ID=NO04G03360.2-protein|Name=NO04G03360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=756bp
MASTFLPSSNSAFMAPLQPPSPPPQPSDVPMSSARIRLSYEYDSYEDGPS
PEYHEVQQQQQQQQQQQQQQQQQQLQQQHVSHQPASVGTNAKNESTNFTH
DDYEWLHNIDEEVRRRHEELTRVREASKASVHLLENKARSGLSPAFSPSV
QHFVSNVMARGTVTSFFPGDSLSGRTPSGPDDERTPTTPGGGDFLQTPRS
TGGGAINASSSFRTKGALGFIKEEAVRLRADLEQQAGLLASEKQYNDQLQ
EEVRKLVGESERLRQESEAQLDQLRQELARKHQAYEEMKEFSEQAQAKGL
DAETRLQATIEEMQRVAATGLEQQQQQQGEEIDAAAHPHSTFVYQEEQLF
ILNRQVEELRQQGATAEETARAATQALEDELQQQREATDAYRLEARQLQW
KYDQQQVEKQQQEEAAAAEAEATVKGMLPPALSPTTPLGGSGVDAERLTQ
ALAVSEAAKEALEGELHQQRLDAEWYRAEIKRLQQKQSLDEEGQGVVAPP
ETGQRGEEEAGARQAVEELLHQQRRELEWYRAETERLQQSQVEGQSAVLA
PEGGLGRDEEAAARQALEEALHQQEVKAAWLQKEIEQLRRERDEQQAAVA
AASADASQGAEGGEMVQMLEGEIQRQRELLTSYEAELEQHRQDKAPMTAR
MTTIGATMPLTAPVVGQQQGGTEGQMVSLQPVGDEERQTLESTIQALEEA
NRQLVEGFQKVEGKLSRVKELESENRDLLLLVDELKDVLGNERENHHRHL
EDSVR* back to topmRNA from alignment at chr4:925338..928894+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03360.2 ID=NO04G03360.2|Name=NO04G03360.2|organism=Nannochloropsis oceanica|type=mRNA|length=3557bp|location=Sequence derived from alignment at chr4:925338..928894+ (Nannochloropsis oceanica)
ACAGTTTTGCCGGGCCTGCCCTTGTTGAACGAGAAACTTGCGCACACAGG
GACCACCAGCAAAGCGACCAAGCGTCACCGAAAACTTAAGACCCATGGCG
TCGACTTTTCTCCCGAGCAGTAACAGTGCCTTCATGGCGCCGCTACAGCC
TCCCTCGCCGCCTCCGCAGCCCAGCGATGTCCCTATGTCCTCTGCTCGTA
TCCGACTCTCGTATGAGTACGATTCGTACGAGGATGGGCCCTCGCCTGAG
TACCACGAAGTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGCAGCAGCAGCATGTCTCGCACCAGCCTGCCT
CGGTCGGTACCAACGCAAAGAATGAGAGCACGAACTTCACACACGACGAC
TATGAATGGCTACACAACATCGACGAGGAGGTTCGGCGGCGCCATGAGGA
ACTGACCCGTGTCCGAGAAGCCAGTAAGGCCTCCGTGCATTTGTTGGAAA
ACAAGGCGCGGAGTGGACTGAGCCCGGCTTTTAGTCCCTCCGTGCAACAC
TTTGTTAGCAACGTGATGGCGCGAGGCACGGTCACATCATTCTTCCCCGG
CGATTCACTGTCCGGGCGCACACCTTCGGGTCCTGACGACGAGCGCACCC
CCACCACGCCGGGCGGGGGGGATTTCCTTCAAACCCCGCGCAGTACGGGT
GGTGGAGCTATCAATGCCAGCTCGTCTTTCCGCACCAAGGGTGCACTGGG
GTTCATCAAGGAAGAGGCCGTTCGCCTACGAGGTAAGGGAAGAATCTTTG
TGCAGAAGATTTGTGAGAAATGACAAGGGGAGGGAGGAAAGGAAGGGATG
ATGGTTGACGATGGCGTATGGCCTCTGTGTTGTGCGAGCTTCAGTCGAAG
AATATGGAGCTTGGGCTTATGTGCGAGCCATCTCTATCTACTATGAGTCA
CGACGTACTAATGTATACTTACTATCCTCTCATTTTACCCATAGCCGACC
TGGAACAGCAAGCGGGCCTGCTTGCAAGCGAAAAGCAATACAACGATCAG
CTCCAGGAAGAGGTGCGAAAGCTTGTCGGGGAGTCGGAGCGCCTGCGGCA
GGAATCAGAGGTAGGTTGGGTAGTGTCCTGTGTGTGTATTTTGAGCATGG
ATGAATTACACACCACGTGCAATGTAGCAATGGTACTCACCCCCCCACCC
CTTTCCATCCTTACACGTCCTCACCGGGCACGACAGGCTCAACTAGATCA
GCTGCGCCAGGAGCTCGCACGCAAACACCAGGCGTACGAAGAAATGAAAG
AATTTAGCGAGCAGGCTCAAGCCAAGGGACTAGACGCAGAGACGAGGCTG
CAGGCCACTATCGAGGAGATGCAGCGGGTGGCCGCCACGGGCCTGGAGCA
ACAGCAGCAGCAGCAGGGAGAGGAAATCGACGCGGCGGCCCATCCACATT
CCACGTTTGTCTACCAGGAAGAGCAGCTGTTTATCCTAAATCGTCAGGTT
GAGGAGCTGCGCCAGCAAGGCGCCACGGCTGAAGAGACTGCCAGGGCTGC
CACCCAAGCATTGGAGGACGAGCTGCAGCAGCAAAGGGAGGCGACAGACG
CCTACCGGCTCGAGGCGCGGCAGCTCCAATGGAAGTACGATCAGCAGCAG
GTCGAGAAACAGCAGCAGGAAGAAGCAGCAGCAGCAGAGGCAGAGGCAAC
GGTGAAAGGGATGCTTCCCCCAGCTCTTTCTCCGACAACTCCTCTCGGTG
GGTCGGGCGTTGATGCGGAGAGGTTGACGCAGGCATTAGCGGTCTCGGAA
GCAGCGAAAGAAGCGCTTGAGGGGGAGCTTCATCAGCAGCGACTGGACGC
GGAGTGGTATCGGGCGGAGATAAAGCGGCTGCAGCAGAAGCAAAGTCTGG
ACGAAGAGGGACAGGGAGTCGTAGCTCCGCCAGAGACAGGGCAGCGGGGA
GAAGAGGAAGCAGGTGCCCGGCAAGCCGTGGAGGAGTTGCTCCACCAGCA
GCGACGGGAACTGGAATGGTATCGGGCGGAAACGGAGCGGTTACAACAGA
GTCAGGTTGAGGGACAAAGCGCTGTTCTGGCACCGGAAGGGGGCCTGGGA
AGGGACGAGGAAGCGGCTGCCCGGCAAGCGCTGGAGGAGGCGCTTCACCA
GCAGGAAGTCAAGGCGGCGTGGCTACAAAAGGAGATAGAGCAGCTGCGAC
GAGAGCGAGATGAGCAACAGGCTGCAGTGGCGGCGGCCTCAGCAGATGCA
AGCCAGGGGGCAGAGGGGGGAGAGATGGTGCAGATGCTTGAGGGGGAGAT
TCAGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTGAGTTGGAACAGC
ACCGACAAGATAAGGCCCCTATGACCGCAAGGATGACGACGATCGGTGCT
ACCATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCAGGGAGGAACTGA
AGGGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGGAACGACAGACAT
TGGAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGGCAACTGGTCGAG
GGGTTTCAAAAGGTGGAGGGGAAGTTGTCGCGAGTGAAAGAGGTCAGTTC
ACTGAAGTGCTTTGTTCGTGGCTTTCCAAATTGAGGGGATATTTTGACAC
CAATATTTCTTCTCTCTTCCTGTTTTTCCACCTCTTTCCACAGCTCGAGA
GCGAAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCAAAGATGTGTTG
GGCAATGAGCGAGAGAACCACCACAGGCACCTCGAAGATTCCGTAAGATA
GGGAAGGCTTGGGTGGGGTGGATTAGATCAAAGTTTGTACCTACCCGTCA
GCGTCTCATGTCATAACTTTTCTTACTTGCTCTTCGCTGTAGACCTCCAT
ACTGTTGATATTTAATTTCTCACCTGCGCTCCCCTAATCACGCATATACA
GTTGTCGGGACTGAAAAACGAGATCGAGCGGCTGGTCGATGAAGTCCAAC
GGCTAGAGGCGGCGGACAAAGAGTTGAGGCTAAAGAAATACAATGAATCG
CTTTTCGTGCTAAAGCGTGTGACGCATAATGTTCTTGCCAAGCAGCAGCT
CAAAACCAAACAGCGTGCGATTTGCCGCTGGGTAACGGCTGTCAATGCGA
TGCAGGGGGAAGAGCTTGTAGCGTTCCGAGAGGCGGCAAAGCAGGCACCA
CAGGCAGAGGAGATCAAGCAGCTAGAGGGCGAGAACAAGGCCTTGCTCGA
GGAGCTGCAGAGGGAGCCGCCCACCCGAGAAGGTGTGATGACAGGGGCAG
TGCGGGGAGGAACATCAGCTCCAGGAGGAAGCGGAATTGCGTCATTTTTG
AGTTTTTGGCTCAAGTTGTTCCTTGTCGGCAGCCTTTTCATGTTCCTGCA
GCAGGTCTTTGCCATGCTGGGTGGGGTTAGTTCCTACTGCTATATGGAAA
CAGCACGTATCACCATGTAATGTATTTTTAAATTCAAAAGTACCGTAGAG
ATATGGAACGGTAGAATAAGGGAGAGAAAAAAGAAAAAATGCTATGTAAA
GTTACTA back to topCoding sequence (CDS) from alignment at chr4:925338..928894+ >NO04G03360.2 ID=NO04G03360.2|Name=NO04G03360.2|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at chr4:925338..928894+ (Nannochloropsis oceanica)
ATGGCGTCGACTTTTCTCCCGAGCAGTAACAGTGCCTTCATGGCGCCGCT
ACAGCCTCCCTCGCCGCCTCCGCAGCCCAGCGATGTCCCTATGTCCTCTG
CTCGTATCCGACTCTCGTATGAGTACGATTCGTACGAGGATGGGCCCTCG
CCTGAGTACCACGAAGTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAGCATGTCTCGCACCAGC
CTGCCTCGGTCGGTACCAACGCAAAGAATGAGAGCACGAACTTCACACAC
GACGACTATGAATGGCTACACAACATCGACGAGGAGGTTCGGCGGCGCCA
TGAGGAACTGACCCGTGTCCGAGAAGCCAGTAAGGCCTCCGTGCATTTGT
TGGAAAACAAGGCGCGGAGTGGACTGAGCCCGGCTTTTAGTCCCTCCGTG
CAACACTTTGTTAGCAACGTGATGGCGCGAGGCACGGTCACATCATTCTT
CCCCGGCGATTCACTGTCCGGGCGCACACCTTCGGGTCCTGACGACGAGC
GCACCCCCACCACGCCGGGCGGGGGGGATTTCCTTCAAACCCCGCGCAGT
ACGGGTGGTGGAGCTATCAATGCCAGCTCGTCTTTCCGCACCAAGGGTGC
ACTGGGGTTCATCAAGGAAGAGGCCGTTCGCCTACGAGCCGACCTGGAAC
AGCAAGCGGGCCTGCTTGCAAGCGAAAAGCAATACAACGATCAGCTCCAG
GAAGAGGTGCGAAAGCTTGTCGGGGAGTCGGAGCGCCTGCGGCAGGAATC
AGAGGCTCAACTAGATCAGCTGCGCCAGGAGCTCGCACGCAAACACCAGG
CGTACGAAGAAATGAAAGAATTTAGCGAGCAGGCTCAAGCCAAGGGACTA
GACGCAGAGACGAGGCTGCAGGCCACTATCGAGGAGATGCAGCGGGTGGC
CGCCACGGGCCTGGAGCAACAGCAGCAGCAGCAGGGAGAGGAAATCGACG
CGGCGGCCCATCCACATTCCACGTTTGTCTACCAGGAAGAGCAGCTGTTT
ATCCTAAATCGTCAGGTTGAGGAGCTGCGCCAGCAAGGCGCCACGGCTGA
AGAGACTGCCAGGGCTGCCACCCAAGCATTGGAGGACGAGCTGCAGCAGC
AAAGGGAGGCGACAGACGCCTACCGGCTCGAGGCGCGGCAGCTCCAATGG
AAGTACGATCAGCAGCAGGTCGAGAAACAGCAGCAGGAAGAAGCAGCAGC
AGCAGAGGCAGAGGCAACGGTGAAAGGGATGCTTCCCCCAGCTCTTTCTC
CGACAACTCCTCTCGGTGGGTCGGGCGTTGATGCGGAGAGGTTGACGCAG
GCATTAGCGGTCTCGGAAGCAGCGAAAGAAGCGCTTGAGGGGGAGCTTCA
TCAGCAGCGACTGGACGCGGAGTGGTATCGGGCGGAGATAAAGCGGCTGC
AGCAGAAGCAAAGTCTGGACGAAGAGGGACAGGGAGTCGTAGCTCCGCCA
GAGACAGGGCAGCGGGGAGAAGAGGAAGCAGGTGCCCGGCAAGCCGTGGA
GGAGTTGCTCCACCAGCAGCGACGGGAACTGGAATGGTATCGGGCGGAAA
CGGAGCGGTTACAACAGAGTCAGGTTGAGGGACAAAGCGCTGTTCTGGCA
CCGGAAGGGGGCCTGGGAAGGGACGAGGAAGCGGCTGCCCGGCAAGCGCT
GGAGGAGGCGCTTCACCAGCAGGAAGTCAAGGCGGCGTGGCTACAAAAGG
AGATAGAGCAGCTGCGACGAGAGCGAGATGAGCAACAGGCTGCAGTGGCG
GCGGCCTCAGCAGATGCAAGCCAGGGGGCAGAGGGGGGAGAGATGGTGCA
GATGCTTGAGGGGGAGATTCAGCGGCAGAGGGAGCTACTGACGAGCTATG
AGGCTGAGTTGGAACAGCACCGACAAGATAAGGCCCCTATGACCGCAAGG
ATGACGACGATCGGTGCTACCATGCCCCTGACGGCGCCTGTTGTGGGGCA
ACAGCAGGGAGGAACTGAAGGGCAGATGGTCTCGTTGCAGCCGGTGGGAG
ATGAGGAACGACAGACATTGGAGTCAACTATCCAGGCGCTGGAGGAAGCC
AATCGGCAACTGGTCGAGGGGTTTCAAAAGGTGGAGGGGAAGTTGTCGCG
AGTGAAAGAGCTCGAGAGCGAAAATCGGGATCTGCTGCTGTTGGTGGATG
AGCTCAAAGATGTGTTGGGCAATGAGCGAGAGAACCACCACAGGCACCTC
GAAGATTCCGTAAGATAG back to top
|