NO04G03330, NO04G03330 (gene) Nannochloropsis oceanica

Overview
NameNO04G03330
Unique NameNO04G03330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1481
Alignment locationchr4:920284..921764 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:920284..921764 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO04G03330 vs. NCBI_GenBank
Match: EWM28799.1 (protein of unknown function DUF1279 [Nannochloropsis gaditana])

HSP 1 Score: 229.9 bits (585), Expect = 9.100e-57
Identity = 143/280 (51.07%), Postives = 178/280 (63.57%), Query Frame = 0
Query:    1 MLRGPGCAVGLLRGSGVTGRHAP-GSIAWVRPSAAFQYH-QSRLCFGTHHPPRHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLRTPARRFGTSMRLGS-SSSGDRNKSTSSR---TNRSGNEKSTGEGSAVPG----QATPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPA 271
            M RG G  VGLLR S      +P   + W+RP+A    H QSRLCF +  P R+        +  G   A+  + +   +++      R  A NL S  L     R  G++ RLGS +SSG+R+ ST+         GN +S GEG A P     ++T   E+  K+GKLRLM+KRYGAVAV+TYLGVYV TL  LFA VESG+ PFDYGLDS WLVEKAT +LE YSWSEP VE IQ NPHAGNFAVAW+LTK TEP+RM++TI +VPRIAR LG+AP+
Sbjct:    1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRR--APNL-SLGLFHISHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_005855884.1 (hypothetical protein NGA_2087520 [Nannochloropsis gaditana CCMP526] >XP_005856007.1 hypothetical protein NGA_2087510 [Nannochloropsis gaditana CCMP526] >EKU20355.1 hypothetical protein NGA_2087510 [Nannochloropsis gaditana CCMP526] >EKU20477.1 hypothetical protein NGA_2087520 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 229.2 bits (583), Expect = 1.600e-56
Identity = 142/280 (50.71%), Postives = 178/280 (63.57%), Query Frame = 0
Query:    1 MLRGPGCAVGLLRGSGVTGRHAP-GSIAWVRPSAAFQYH-QSRLCFGTHHPPRHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLRTPARRFGTSMRLGSSSS-GDRNKSTSSR---TNRSGNEKSTGEGSAVPG----QATPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPA 271
            M RG G  VGLLR S      +P   + W+RP+A    H QSRLCF +  P R+        +  G   A+  + +   +++      R  A NL S  L     R  G++ RLGS +S G+R+ ST+         GN +S GEG A P     +++   E+  K+GKLRLM+KRYGAVAV+TYLGVYV TL  LFA VESG+ PFDYGLDS WLVEKAT +LE YSWSEP VE IQ NPHAGNFAVAW+LTKFTEP+RM++TI +VPRIAR LG+AP+
Sbjct:    1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRR--APNL-SLGLFHISHRLAGSNTRLGSGTSCGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESSRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKFTEPLRMILTIAVVPRIARVLGRAPS 277          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: GBG29862.1 (Hypothetical Protein FCC1311_060822 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 94.7 bits (234), Expect = 4.600e-16
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 0
Query:  157 IGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPAR 272
            + +++ +I+ +G VA+  Y G+YVGTLG+L+  VE+ +     G      V K+TG+         FV+  + NP  GNFAVAWILTKFTEP R+L+ + + PR+ARA+G AP +
Sbjct:  227 VSRIKALIRDFGPVAIGVYGGIYVGTLGLLYGLVEADI----VGAGDAISVLKSTGL-------NHFVDMDKINPRMGNFAVAWILTKFTEPPRLLLALAVTPRVARAIGWAPRK 330          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: GAX13344.1 (hypothetical protein FisN_17Hh287 [Fistulifera solaris])

HSP 1 Score: 84.0 bits (206), Expect = 8.100e-13
Identity = 51/130 (39.23%), Postives = 77/130 (59.23%), Query Frame = 0
Query:  151 VEEEGKIGKLRL--MIKRYGAVAVVTYLGVYVGTLGILFATVESGV-NP---FDY-GLDSGWLVEKATGI----LEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAP 270
            + E+ K G L    M+K+YG V + TYLGVYV TL + F  +E+GV +P   F + G DSG +      +    ++ ++ ++P V  ++  P   NFAVAWI  KFTEPVR+ + + + PR+AR +G  P
Sbjct:   87 LREDPKKGALAFGAMMKKYGPVFIGTYLGVYVTTLALFFGGIETGVLDPVVLFQWIGSDSGSVTSTTYDLVMEFMKNHAVTKPAVPYLEKYPAMANFAVAWITVKFTEPVRLPIALFLTPRVARMVGYRP 216          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_004345946.1 (hypothetical protein ACA1_183360 [Acanthamoeba castellanii str. Neff] >ELR21402.1 hypothetical protein ACA1_183360 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 78.6 bits (192), Expect = 3.400e-11
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 0
Query:  156 KIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIAR 264
            K+GK+R  +K+YGAV VVTY G+Y  TL   +    SG+      L +G +V    G++E     + F E++   P  GNFA+AW+ TKFTEP+R  +T+ I P I+R
Sbjct:  165 KLGKIRTFLKKYGAVGVVTYFGLYGATLASFYGAYSSGL------LFAGDVV----GLIEFLHLGDFFDESLL-TPKVGNFALAWVSTKFTEPLRFAITLGITPSISR 261          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_002288717.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94153.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-11
Identity = 61/213 (28.64%), Postives = 98/213 (46.01%), Query Frame = 0
Query:   98 LLRTPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESG------------------------VNPFDYGL-------------------DSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGK 268
            L+RT ++       LG+ SS   N STS++ + SGN+    E +      T + ++     K++L+ K+YG V V TY+ +Y  TL  +F ++E G                        + P   G                    +   LV+  TG L+ + W+  + E ++ NPH  N AVAW + KFTEPVR+   I +VP++A+ +GK
Sbjct:  119 LMRTSSKSKVYFSSLGTMSSS--NHSTSTKPS-SGNDSVKDESN-----KTDITKQLSTKEKVKLLFKKYGFVFVGTYMSIYFATLLSIFGSLEMGLLDPDTLSQIFKVSKDLACETADVIGPTGTGASMNEAANAYAAEFKSDITDEKRSLVDIITGYLQTWDWTAKYAEKLEKNPHLANLAVAWFIVKFTEPVRLAAAIMVVPKVAKMVGK 323          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: GAX09246.1 (hypothetical protein FisN_17Lh287 [Fistulifera solaris])

HSP 1 Score: 77.8 bits (190), Expect = 5.800e-11
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 0
Query:   91 SNLPSAVLLRTPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPVVEEEGKIGKLRL--MIKRYGAVAVVTYLGVYVGTLGILFATVESGV-NP---FDY-GLDSGWLVEKAT-----GILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAP 270
            S+LP  + +    R F  + + G+ +   R ++   R N S              +    + E+ K G L    M+K+YG V + TYL VYV TL +LF  +E+GV +P   F + G DSG +    T       ++ ++ ++P V  ++  P   NFAVAWI  KFTEPVR+ V + + PR+AR +G  P
Sbjct:   46 SHLPQPIRI-LQQRCFSATTKEGTRAERFRERAEEMRDNAS--------------ERWHELREDPKKGALAFGAMMKKYGPVFIGTYLSVYVTTLALLFGGIETGVLDPVVLFQWIGSDSGSVSASTTYDLVMEFMKNHAVTKPAVPYLEKYPSMANFAVAWITVKFTEPVRLPVALFLTPRVARMVGYRP 221          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_009826165.1 (hypothetical protein H257_03670 [Aphanomyces astaci] >ETV84473.1 hypothetical protein H257_03670 [Aphanomyces astaci])

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-10
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 0
Query:  151 VEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGV---------NPFDYGLDSGWLVEKATGILEGYSWS---EPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARAL 266
            V + G + K + +   YG V V TYLGVYV TLG +FA +E+G+         +  +   D  + + KAT  L  ++ S            +P  G+F +AW+ TKFTEPVR+ VT+ I PR+AR L
Sbjct:   63 VAKSGPLQKFKDLWNTYGWVGVGTYLGVYVVTLGSMFAAIETGLLSTAAPSNKDDTNGSDDESFNIVKATNKLTDWTKSMGLGAHFNVPDVSPTTGSFLIAWVATKFTEPVRLAVTLMITPRLARFL 189          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: XP_008870915.1 (hypothetical protein H310_07317 [Aphanomyces invadans] >ETW00780.1 hypothetical protein H310_07317 [Aphanomyces invadans])

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-10
Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = 0
Query:  149 PVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGV----------------NPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARAL 266
            P+    G + K + +  +YG V V TYLGVYV TLG +F  +E+GV                  F+    +  L E    I  G  ++ P V     +P  G F +AW+ TKFTEPVR+ VT+ I PR+AR L
Sbjct:   56 PITTAGGPLQKFKDLWNKYGWVGVGTYLGVYVVTLGSMFVAIETGVLSTAAPSKATDSEDKNEAFNIVTATNKLTEWTKSIGLGAHFNVPDV-----SPTTGTFLIAWVATKFTEPVRLAVTLMITPRLARFL 183          
BLAST of NO04G03330 vs. NCBI_GenBank
Match: CEO94899.1 (hypothetical protein PBRA_003712 [Plasmodiophora brassicae])

HSP 1 Score: 75.5 bits (184), Expect = 2.900e-10
Identity = 51/126 (40.48%), Postives = 69/126 (54.76%), Query Frame = 0
Query:  141 SAVPGQATPVVEEEGKI----GKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIA 263
            S  P + TP+ +         GKLR +  +YG VAV TY   YV TLG+++A +ES   PF    DS  L++           +    +  Q NP AG+FAVAWIL KFTEP+R+  T+ + PRIA
Sbjct:   47 SKAPLEQTPLEQATAAAQKAPGKLRDLWNKYGVVAVSTYAVTYVSTLGLIYALLES---PFLSPGDSLRLLDSI--------GAGRIFDLSQINPKAGSFAVAWILAKFTEPLRLGFTVLVTPRIA 161          
The following BLAST results are available for this feature:
BLAST of NO04G03330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28799.19.100e-5751.07protein of unknown function DUF1279 [Nannochlorops... [more]
XP_005855884.11.600e-5650.71hypothetical protein NGA_2087520 [Nannochloropsis ... [more]
GBG29862.14.600e-1642.61Hypothetical Protein FCC1311_060822 [Aurantiochytr... [more]
GAX13344.18.100e-1339.23hypothetical protein FisN_17Hh287 [Fistulifera sol... [more]
XP_004345946.13.400e-1141.67hypothetical protein ACA1_183360 [Acanthamoeba cas... [more]
XP_002288717.14.400e-1128.64predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX09246.15.800e-1132.98hypothetical protein FisN_17Lh287 [Fistulifera sol... [more]
XP_009826165.11.700e-1037.80hypothetical protein H257_03670 [Aphanomyces astac... [more]
XP_008870915.11.700e-1036.84hypothetical protein H310_07317 [Aphanomyces invad... [more]
CEO94899.12.900e-1040.48hypothetical protein PBRA_003712 [Plasmodiophora b... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03330.1NO04G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579098gene_2108Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03330.1NO04G03330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03330 ID=NO04G03330|Name=NO04G03330|organism=Nannochloropsis oceanica|type=gene|length=1481bp
AATCTGTGTAGTGCTGTCTTCTCGACCATTACGTCCGAGTCGTGCTCCTC
AGCGGCGAGCGCTCCGGTGCCAGCTACCTTATGTGCCTTTATTTTATGTC
GTACGACGAGATAACCACAGGCATGAGCTACTTTATGACCACGCGAAGGC
CTTCCTCACGCCGCTTGCCTGGGTTGCCTGAGTCAAGCAAATGCAGATTT
GACTTAATTTGTTTTTGAGACACTCTTTTTTTCTCGAATGCGACCTCCTC
ACCCCCTCCTCATCCTCTGGACCACCCTTGACGTAGCTAACTCCCTTTCC
CCTCGGCCCTCCTTAACAGACAGAAGGTCAACATCATGTTGCGAGGCCCG
GGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGC
ACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACC
AAAGTCGCCTTTGCTTCGGGACACACCATCCACCACGTCACTTCATCGTA
AACCCATGTCGTCCCTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACA
GGACGAAAATACTCTTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATG
CGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGT
TTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAA
AAGCACCAGCAGCAGGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAG
AGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGG
AAGATAGGCAAGCTCCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGT
AGTTACGTATTTGGGGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGA
CAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGGCTGGATTCGGGATGG
TTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCC
CTTTGTAGAGGCGATTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGG
CCTGGATCTTGACCAAATTCACCGAGCCTGTGCGCATGCTTGTGACGATT
ACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATG
AGACGAAGATGAGCGGGAAAAATATGCCACATTTGTTTTGTGTTGGATTT
TGCATGGAGGTGGCATGTGAACGCCTAAGGATGTTATTACTCGCATGGAA
ACCAGGGTTAACTGAATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGT
TTGACTTGTGAGGAGAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGA
GACTTCTGAGGGATGCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATT
TCCCTTCTATTACAACGGAAGACGTCGAATAAAATAAATAGAAGTAACCG
AAATTTTCCAGGACAAACAACAAACGACACG
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protein sequence of NO04G03330.1

>NO04G03330.1-protein ID=NO04G03330.1-protein|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MLRGPGCAVGLLRGSGVTGRHAPGSIAWVRPSAAFQYHQSRLCFGTHHPP
RHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLR
TPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPV
VEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYG
LDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVR
MLVTITIVPRIARALGKAPAR*
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Synonyms
Publications