NO04G03330.1, NO04G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03330.1
Unique NameNO04G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1481
Alignment locationchr4:920284..921764 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:920284..921764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03330.1 vs.
Match: EWM28799.1 (protein of unknown function DUF1279 [Nannochloropsis gaditana])

HSP 1 Score: 229.9 bits (585), Expect = 9.100e-57
Identity = 143/280 (51.07%), Postives = 178/280 (63.57%), Query Frame = 0
Query:    1 MLRGPGCAVGLLRGSGVTGRHAPG-SIAWVRPSAAFQYH-QSRLCFGTHHPPRHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLRTPARRFGTSMRLGS-SSSGDRNKSTSSR---TNRSGNEKSTGEGSAVPG----QATPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPA 271
            M RG G  VGLLR S      +P   + W+RP+A    H QSRLCF +  P R+        +  G   A+  + +   +++      R  A NL S  L     R  G++ RLGS +SSG+R+ ST+         GN +S GEG A P     ++T   E+  K+GKLRLM+KRYGAVAV+TYLGVYV TL  LFA VESG+ PFDYGLDS WLVEKAT +LE YSWSEP VE IQ NPHAGNFAVAW+LTK TEP+RM++TI +VPRIAR LG+AP+
Sbjct:    1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRR--APNL-SLGLFHISHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277          
The following BLAST results are available for this feature:
BLAST of NO04G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28799.19.100e-5751.07protein of unknown function DUF1279 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03330NO04G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03330.1NO04G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03330.1.cds1NO04G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03330.1 ID=NO04G03330.1|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp
AATCTGTGTAGTGCTGTCTTCTCGACCATTACGTCCGAGTCGTGCTCCTC
AGCGGCGAGCGCTCCGGTGCCAGCTACCTTATGTGCCTTTATTTTATGTC
GTACGACGAGATAACCACAGGCATGAGCTACTTTATGACCACGCGAAGGC
CTTCCTCACGCCGCTTGCCTGGGTTGCCTGAGTCAAGCAAATGCAGATTT
GACTTAATTTGTTTTTGAGACACTCTTTTTTTCTCGAATGCGACCTCCTC
ACCCCCTCCTCATCCTCTGGACCACCCTTGACGTAGCTAACTCCCTTTCC
CCTCGGCCCTCCTTAACAGACAGAAGGTCAACATCATGTTGCGAGGCCCG
GGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGC
ACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACC
AAAGTCGCCTTTGCTTCGGGACACACCATCCACCACGTCACTTCATCGTA
AACCCATGTCGTCCCTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACA
GGACGAAAATACTCTTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATG
CGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGT
TTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAA
AAGCACCAGCAGCAGGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAG
AGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGG
AAGATAGGCAAGCTCCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGT
AGTTACGTATTTGGGGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGA
CAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGGCTGGATTCGGGATGG
TTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCC
CTTTGTAGAGGCGATTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGG
CCTGGATCTTGACCAAATTCACCGAGCCTGTGCGCATGCTTGTGACGATT
ACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATG
AGACGAAGATGAGCGGGAAAAATATGCCACATTTGTTTTGTGTTGGATTT
TGCATGGAGGTGGCATGTGAACGCCTAAGGATGTTATTACTCGCATGGAA
ACCAGGGTTAACTGAATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGT
TTGACTTGTGAGGAGAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGA
GACTTCTGAGGGATGCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATT
TCCCTTCTATTACAACGGAAGACGTCGAATAAAATAAATAGAAGTAACCG
AAATTTTCCAGGACAAACAACAAACGACACG
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protein sequence of NO04G03330.1

>NO04G03330.1-protein ID=NO04G03330.1-protein|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MLRGPGCAVGLLRGSGVTGRHAPGSIAWVRPSAAFQYHQSRLCFGTHHPP
RHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLR
TPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPV
VEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYG
LDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVR
MLVTITIVPRIARALGKAPAR*
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mRNA from alignment at chr4:920284..921764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03330.1 ID=NO04G03330.1|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at chr4:920284..921764- (Nannochloropsis oceanica)
AATCTGTGTAGTGCTGTCTTCTCGACCATTACGTCCGAGTCGTGCTCCTC AGCGGCGAGCGCTCCGGTGCCAGCTACCTTATGTGCCTTTATTTTATGTC GTACGACGAGATAACCACAGGCATGAGCTACTTTATGACCACGCGAAGGC CTTCCTCACGCCGCTTGCCTGGGTTGCCTGAGTCAAGCAAATGCAGATTT GACTTAATTTGTTTTTGAGACACTCTTTTTTTCTCGAATGCGACCTCCTC ACCCCCTCCTCATCCTCTGGACCACCCTTGACGTAGCTAACTCCCTTTCC CCTCGGCCCTCCTTAACAGACAGAAGGTCAACATCATGTTGCGAGGCCCG GGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGC ACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACC AAAGTCGCCTTTGCTTCGGGACACACCATCCACCACGTCACTTCATCGTA AACCCATGTCGTCCCTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACA GGACGAAAATACTCTTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATG CGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGT TTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAA AAGCACCAGCAGCAGGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAG AGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGG AAGATAGGCAAGCTCCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGT AGTTACGTATTTGGGGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGA CAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGGCTGGATTCGGGATGG TTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCC CTTTGTAGAGGCGATTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGG CCTGGATCTTGACCAAATTCACCGAGCCTGTGCGCATGCTTGTGACGATT ACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATG AGACGAAGATGAGCGGGAAAAATATGCCACATTTGTTTTGTGTTGGATTT TGCATGGAGGTGGCATGTGAACGCCTAAGGATGTTATTACTCGCATGGAA ACCAGGGTTAACTGAATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGT TTGACTTGTGAGGAGAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGA GACTTCTGAGGGATGCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATT TCCCTTCTATTACAACGGAAGACGTCGAATAAAATAAATAGAAGTAACCG AAATTTTCCAGGACAAACAACAAACGACACG
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Coding sequence (CDS) from alignment at chr4:920284..921764-

>NO04G03330.1 ID=NO04G03330.1|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr4:920284..921764- (Nannochloropsis oceanica)
ATGTTGCGAGGCCCGGGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGT
CACGGGGAGGCATGCACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAG
CATTTCAGTATCACCAAAGTCGCCTTTGCTTCGGGACACACCATCCACCA
CGTCACTTCATCGTAAACCCATGTCGTCCCTCCTGTACGGGGAATCTGGG
CGCGAAGCCACCACAGGACGAAAATACTCTTTCCATCGAGGGACCTAGAG
CCCTCACGCGGAATGCGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGT
ACCCCCGCCCGCCGTTTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAG
TGGTGACCGTAATAAAAGCACCAGCAGCAGGACCAACAGGAGTGGCAACG
AGAAGAGCACAGGAGAGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTC
GTGGAGGAGGAGGGGAAGATAGGCAAGCTCCGGCTGATGATAAAGCGATA
CGGGGCCGTGGCCGTAGTTACGTATTTGGGGGTGTACGTTGGGACCTTGG
GAATTCTGTTTGCGACAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGG
CTGGATTCGGGATGGTTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTA
TTCGTGGAGCGAGCCCTTTGTAGAGGCGATTCAGAATAACCCTCATGCGG
GTAATTTTGCCGTGGCCTGGATCTTGACCAAATTCACCGAGCCTGTGCGC
ATGCTTGTGACGATTACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAA
GGCTCCTGCGCGATGA
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Synonyms
Publications