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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:920284..921764 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03330.1 vs.
Match: EWM28799.1 (protein of unknown function DUF1279 [Nannochloropsis gaditana]) HSP 1 Score: 229.9 bits (585), Expect = 9.100e-57 Identity = 143/280 (51.07%), Postives = 178/280 (63.57%), Query Frame = 0
Query: 1 MLRGPGCAVGLLRGSGVTGRHAPG-SIAWVRPSAAFQYH-QSRLCFGTHHPPRHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLRTPARRFGTSMRLGS-SSSGDRNKSTSSR---TNRSGNEKSTGEGSAVPG----QATPVVEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYGLDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVRMLVTITIVPRIARALGKAPA 271
M RG G VGLLR S +P + W+RP+A H QSRLCF + P R+ + G A+ + + +++ R A NL S L R G++ RLGS +SSG+R+ ST+ GN +S GEG A P ++T E+ K+GKLRLM+KRYGAVAV+TYLGVYV TL LFA VESG+ PFDYGLDS WLVEKAT +LE YSWSEP VE IQ NPHAGNFAVAW+LTK TEP+RM++TI +VPRIAR LG+AP+
Sbjct: 1 MFRGQGGVVGLLRFSCAAPMRSPVCGLTWIRPTATLSSHEQSRLCFVSASPQRYLAFKTHIHADFGGPHARIRRADRLDALDDFYVTRR--APNL-SLGLFHISHRLAGSNTRLGSGTSSGERSSSTTCNGRDIESKGNLRSQGEGGAAPAGMGTESTRPQEDVNKMGKLRLMVKRYGAVAVITYLGVYVVTLSALFAAVESGLTPFDYGLDSNWLVEKATHLLENYSWSEPLVETIQTNPHAGNFAVAWVLTKITEPLRMILTIAVVPRIARVLGRAPS 277
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03330.1 ID=NO04G03330.1|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp AATCTGTGTAGTGCTGTCTTCTCGACCATTACGTCCGAGTCGTGCTCCTC AGCGGCGAGCGCTCCGGTGCCAGCTACCTTATGTGCCTTTATTTTATGTC GTACGACGAGATAACCACAGGCATGAGCTACTTTATGACCACGCGAAGGC CTTCCTCACGCCGCTTGCCTGGGTTGCCTGAGTCAAGCAAATGCAGATTT GACTTAATTTGTTTTTGAGACACTCTTTTTTTCTCGAATGCGACCTCCTC ACCCCCTCCTCATCCTCTGGACCACCCTTGACGTAGCTAACTCCCTTTCC CCTCGGCCCTCCTTAACAGACAGAAGGTCAACATCATGTTGCGAGGCCCG GGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGC ACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACC AAAGTCGCCTTTGCTTCGGGACACACCATCCACCACGTCACTTCATCGTA AACCCATGTCGTCCCTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACA GGACGAAAATACTCTTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATG CGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGT TTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAA AAGCACCAGCAGCAGGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAG AGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGG AAGATAGGCAAGCTCCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGT AGTTACGTATTTGGGGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGA CAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGGCTGGATTCGGGATGG TTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCC CTTTGTAGAGGCGATTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGG CCTGGATCTTGACCAAATTCACCGAGCCTGTGCGCATGCTTGTGACGATT ACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATG AGACGAAGATGAGCGGGAAAAATATGCCACATTTGTTTTGTGTTGGATTT TGCATGGAGGTGGCATGTGAACGCCTAAGGATGTTATTACTCGCATGGAA ACCAGGGTTAACTGAATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGT TTGACTTGTGAGGAGAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGA GACTTCTGAGGGATGCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATT TCCCTTCTATTACAACGGAAGACGTCGAATAAAATAAATAGAAGTAACCG AAATTTTCCAGGACAAACAACAAACGACACG back to topprotein sequence of NO04G03330.1 >NO04G03330.1-protein ID=NO04G03330.1-protein|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp MLRGPGCAVGLLRGSGVTGRHAPGSIAWVRPSAAFQYHQSRLCFGTHHPP RHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLR TPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPV VEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYG LDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVR MLVTITIVPRIARALGKAPAR* back to topmRNA from alignment at chr4:920284..921764- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03330.1 ID=NO04G03330.1|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at chr4:920284..921764- (Nannochloropsis oceanica) AATCTGTGTAGTGCTGTCTTCTCGACCATTACGTCCGAGTCGTGCTCCTC
AGCGGCGAGCGCTCCGGTGCCAGCTACCTTATGTGCCTTTATTTTATGTC
GTACGACGAGATAACCACAGGCATGAGCTACTTTATGACCACGCGAAGGC
CTTCCTCACGCCGCTTGCCTGGGTTGCCTGAGTCAAGCAAATGCAGATTT
GACTTAATTTGTTTTTGAGACACTCTTTTTTTCTCGAATGCGACCTCCTC
ACCCCCTCCTCATCCTCTGGACCACCCTTGACGTAGCTAACTCCCTTTCC
CCTCGGCCCTCCTTAACAGACAGAAGGTCAACATCATGTTGCGAGGCCCG
GGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGC
ACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACC
AAAGTCGCCTTTGCTTCGGGACACACCATCCACCACGTCACTTCATCGTA
AACCCATGTCGTCCCTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACA
GGACGAAAATACTCTTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATG
CGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGT
TTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAA
AAGCACCAGCAGCAGGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAG
AGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGG
AAGATAGGCAAGCTCCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGT
AGTTACGTATTTGGGGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGA
CAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGGCTGGATTCGGGATGG
TTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCC
CTTTGTAGAGGCGATTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGG
CCTGGATCTTGACCAAATTCACCGAGCCTGTGCGCATGCTTGTGACGATT
ACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATG
AGACGAAGATGAGCGGGAAAAATATGCCACATTTGTTTTGTGTTGGATTT
TGCATGGAGGTGGCATGTGAACGCCTAAGGATGTTATTACTCGCATGGAA
ACCAGGGTTAACTGAATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGT
TTGACTTGTGAGGAGAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGA
GACTTCTGAGGGATGCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATT
TCCCTTCTATTACAACGGAAGACGTCGAATAAAATAAATAGAAGTAACCG
AAATTTTCCAGGACAAACAACAAACGACACG back to topCoding sequence (CDS) from alignment at chr4:920284..921764- >NO04G03330.1 ID=NO04G03330.1|Name=NO04G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr4:920284..921764- (Nannochloropsis oceanica) ATGTTGCGAGGCCCGGGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGT CACGGGGAGGCATGCACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAG CATTTCAGTATCACCAAAGTCGCCTTTGCTTCGGGACACACCATCCACCA CGTCACTTCATCGTAAACCCATGTCGTCCCTCCTGTACGGGGAATCTGGG CGCGAAGCCACCACAGGACGAAAATACTCTTTCCATCGAGGGACCTAGAG CCCTCACGCGGAATGCGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGT ACCCCCGCCCGCCGTTTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAG TGGTGACCGTAATAAAAGCACCAGCAGCAGGACCAACAGGAGTGGCAACG AGAAGAGCACAGGAGAGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTC GTGGAGGAGGAGGGGAAGATAGGCAAGCTCCGGCTGATGATAAAGCGATA CGGGGCCGTGGCCGTAGTTACGTATTTGGGGGTGTACGTTGGGACCTTGG GAATTCTGTTTGCGACAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGG CTGGATTCGGGATGGTTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTA TTCGTGGAGCGAGCCCTTTGTAGAGGCGATTCAGAATAACCCTCATGCGG GTAATTTTGCCGTGGCCTGGATCTTGACCAAATTCACCGAGCCTGTGCGC ATGCTTGTGACGATTACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAA GGCTCCTGCGCGATGA back to top
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