NO04G03320, NO04G03320 (gene) Nannochloropsis oceanica

Overview
NameNO04G03320
Unique NameNO04G03320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length764
Alignment locationchr4:919479..920242 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:919479..920242 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G03320 vs. NCBI_GenBank
Match: EWM28701.1 (hypothetical protein Naga_100002g57 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 1.600e-25
Identity = 85/173 (49.13%), Postives = 101/173 (58.38%), Query Frame = 0 
Query:    2 KRFVSQAGRM--ATRG-VPEASCSSFSAAVSTTIINAGAQHKAKSVGLEXXXXXXXXXXXXXXXXXXXXXXEKPLSVVLQEFEASLDANELRPLMAENAEELLQEAADAIPFAPGTRGSRRKKRNRERQRVVRRADYVKKLQGIGAHEKKMQHRSFAAINERLGKLGLSIKSK 172
            KRFV ++G +   T G + E + SS  AA +  I+ A  Q       ++                       KPLSVVLQEFEASLDANELRPL+AENAEELL+EAADA+PFAPG               VVRRADY++KLQ I  HE+KMQ RS AA+ ERLGKLGLS   K
Sbjct:    3 KRFVYKSGLLLKGTAGAINEPTLSSVQAATAGLIVFAANQ------TIQIKESRRSMTFSTQKKDGGKIASNKPLSVVLQEFEASLDANELRPLIAENAEELLKEAADAVPFAPGXXXXXXXXXXXXXXXVVRRADYIRKLQKIAKHEQKMQRRSVAAVTERLGKLGLSFPVK 169
The following BLAST results are available for this feature:
BLAST of NO04G03320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28701.11.600e-2549.13hypothetical protein Naga_100002g57 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009477NSK009477Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03320.1NO04G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100002g57gene1873Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03320.1NO04G03320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03320 ID=NO04G03320|Name=NO04G03320|organism=Nannochloropsis oceanica|type=gene|length=764bp
ATGAAGCGATTTGTTTCCCAGGCTGGCCGGATGGCTACCCGAGGCGTACC
GGAAGCATCCTGTTCCTCCTTTTCAGCGGCAGTCTCCACCACAATTATCA
ACGCTGGAGCACAGCACAAAGCGAAGAGTGTAGGCTTGGAAGAGCAGCAG
CGCCGGTCCATGATGATGAGGTCGATGCGCGGAGGAGgtacgttatgaaa
tgctgctttgcctgcgcatccaccctcatgcccctctcccctccctcaac
gatcctgcagGTGGAGACAAGAAGGAACCAGAGAAGCCACTGTCGGTGGT
ATTGCAAGAATTTGAAGCCTCCTTGGATGCCAATgtacgtaagacaacgt
gtgcagtgggccttctttctccactttgactcacaatttccttcaatcta
tctcagGAACTTCGCCCACTGATGGCCGAGAACGCGGAGGAGCTGCTGCA
AGAAGCCGCCGACGCTATCCCCTTTGCACCCGGCACGCGAGGGAGCCGGC
GCAAGAAGAGGAATCGTGAGCGTCAACGGGTTGTGAGGgtaagtaaatcc
accagaagagaaagaagtaggaaatttactgacacaaatgccttcatcct
ttctacagCGGGCTGATTACGTCAAGAAGCTGCAAGGAATCGGTGCTCAC
GAGAAGAAGATGCAACATCGGTCTTTCGCCGCCATAAACGAGCGATTGGG
AAAACTGGGATTGTCTATTAAGTCAAAGAAAGCAGAGAGGGTGGGAACCA
CAGCGGTGGTCTAA
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protein sequence of NO04G03320.1

>NO04G03320.1-protein ID=NO04G03320.1-protein|Name=NO04G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MKRFVSQAGRMATRGVPEASCSSFSAAVSTTIINAGAQHKAKSVGLEEQQ
RRSMMMRSMRGGGGDKKEPEKPLSVVLQEFEASLDANELRPLMAENAEEL
LQEAADAIPFAPGTRGSRRKKRNRERQRVVRRADYVKKLQGIGAHEKKMQ
HRSFAAINERLGKLGLSIKSKKAERVGTTAVV*
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Synonyms
Publications