NO04G03320.1, NO04G03320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03320.1
Unique NameNO04G03320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr4:919479..920242 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:919479..920242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03320.1 vs.
Match: EWM28701.1 (hypothetical protein Naga_100002g57 [Nannochloropsis gaditana])

HSP 1 Score: 167.5 bits (423), Expect = 3.700e-38
Identity = 106/173 (61.27%), Postives = 126/173 (72.83%), Query Frame = 0 
Query:    2 KRFVSQAGRM--ATRG-VPEASCSSFSAAVSTTIINAGAQHKAKSVGLEEQQRRSMMMRSMRGGGGDKKEPEKPLSVVLQEFEASLDANELRPLMAENAEELLQEAADAIPFAPGTRGSRRKKRNRERQRVVRRADYVKKLQGIGAHEKKMQHRSFAAINERLGKLGLSIKSK 172
            KRFV ++G +   T G + E + SS  AA +  I+ A  Q    ++ ++E  RRSM   + +  GG K    KPLSVVLQEFEASLDANELRPL+AENAEELL+EAADA+PFAPGTRGSRRKKR RER RVVRRADY++KLQ I  HE+KMQ RS AA+ ERLGKLGLS   K
Sbjct:    3 KRFVYKSGLLLKGTAGAINEPTLSSVQAATAGLIVFAANQ----TIQIKES-RRSMTFSTQKKDGG-KIASNKPLSVVLQEFEASLDANELRPLIAENAEELLKEAADAVPFAPGTRGSRRKKRQRERLRVVRRADYIRKLQKIAKHEQKMQRRSVAAVTERLGKLGLSFPVK 169
The following BLAST results are available for this feature:
BLAST of NO04G03320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28701.13.700e-3861.27hypothetical protein Naga_100002g57 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03320NO04G03320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03320.1NO04G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03320.1.cds1NO04G03320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03320.1.cds2NO04G03320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03320.1.cds3NO04G03320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03320.1.cds4NO04G03320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03320.1 ID=NO04G03320.1|Name=NO04G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=549bp
ATGAAGCGATTTGTTTCCCAGGCTGGCCGGATGGCTACCCGAGGCGTACC
GGAAGCATCCTGTTCCTCCTTTTCAGCGGCAGTCTCCACCACAATTATCA
ACGCTGGAGCACAGCACAAAGCGAAGAGTGTAGGCTTGGAAGAGCAGCAG
CGCCGGTCCATGATGATGAGGTCGATGCGCGGAGGAGGTGGAGACAAGAA
GGAACCAGAGAAGCCACTGTCGGTGGTATTGCAAGAATTTGAAGCCTCCT
TGGATGCCAATGAACTTCGCCCACTGATGGCCGAGAACGCGGAGGAGCTG
CTGCAAGAAGCCGCCGACGCTATCCCCTTTGCACCCGGCACGCGAGGGAG
CCGGCGCAAGAAGAGGAATCGTGAGCGTCAACGGGTTGTGAGGCGGGCTG
ATTACGTCAAGAAGCTGCAAGGAATCGGTGCTCACGAGAAGAAGATGCAA
CATCGGTCTTTCGCCGCCATAAACGAGCGATTGGGAAAACTGGGATTGTC
TATTAAGTCAAAGAAAGCAGAGAGGGTGGGAACCACAGCGGTGGTCTAA
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protein sequence of NO04G03320.1

>NO04G03320.1-protein ID=NO04G03320.1-protein|Name=NO04G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MKRFVSQAGRMATRGVPEASCSSFSAAVSTTIINAGAQHKAKSVGLEEQQ
RRSMMMRSMRGGGGDKKEPEKPLSVVLQEFEASLDANELRPLMAENAEEL
LQEAADAIPFAPGTRGSRRKKRNRERQRVVRRADYVKKLQGIGAHEKKMQ
HRSFAAINERLGKLGLSIKSKKAERVGTTAVV*
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mRNA from alignment at chr4:919479..920242+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03320.1 ID=NO04G03320.1|Name=NO04G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=764bp|location=Sequence derived from alignment at chr4:919479..920242+ (Nannochloropsis oceanica)
ATGAAGCGATTTGTTTCCCAGGCTGGCCGGATGGCTACCCGAGGCGTACC
GGAAGCATCCTGTTCCTCCTTTTCAGCGGCAGTCTCCACCACAATTATCA
ACGCTGGAGCACAGCACAAAGCGAAGAGTGTAGGCTTGGAAGAGCAGCAG
CGCCGGTCCATGATGATGAGGTCGATGCGCGGAGGAGGTACGTTATGAAA
TGCTGCTTTGCCTGCGCATCCACCCTCATGCCCCTCTCCCCTCCCTCAAC
GATCCTGCAGGTGGAGACAAGAAGGAACCAGAGAAGCCACTGTCGGTGGT
ATTGCAAGAATTTGAAGCCTCCTTGGATGCCAATGTACGTAAGACAACGT
GTGCAGTGGGCCTTCTTTCTCCACTTTGACTCACAATTTCCTTCAATCTA
TCTCAGGAACTTCGCCCACTGATGGCCGAGAACGCGGAGGAGCTGCTGCA
AGAAGCCGCCGACGCTATCCCCTTTGCACCCGGCACGCGAGGGAGCCGGC
GCAAGAAGAGGAATCGTGAGCGTCAACGGGTTGTGAGGGTAAGTAAATCC
ACCAGAAGAGAAAGAAGTAGGAAATTTACTGACACAAATGCCTTCATCCT
TTCTACAGCGGGCTGATTACGTCAAGAAGCTGCAAGGAATCGGTGCTCAC
GAGAAGAAGATGCAACATCGGTCTTTCGCCGCCATAAACGAGCGATTGGG
AAAACTGGGATTGTCTATTAAGTCAAAGAAAGCAGAGAGGGTGGGAACCA
CAGCGGTGGTCTAA
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Coding sequence (CDS) from alignment at chr4:919479..920242+

>NO04G03320.1 ID=NO04G03320.1|Name=NO04G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr4:919479..920242+ (Nannochloropsis oceanica)
ATGAAGCGATTTGTTTCCCAGGCTGGCCGGATGGCTACCCGAGGCGTACC
GGAAGCATCCTGTTCCTCCTTTTCAGCGGCAGTCTCCACCACAATTATCA
ACGCTGGAGCACAGCACAAAGCGAAGAGTGTAGGCTTGGAAGAGCAGCAG
CGCCGGTCCATGATGATGAGGTCGATGCGCGGAGGAGGTGGAGACAAGAA
GGAACCAGAGAAGCCACTGTCGGTGGTATTGCAAGAATTTGAAGCCTCCT
TGGATGCCAATGAACTTCGCCCACTGATGGCCGAGAACGCGGAGGAGCTG
CTGCAAGAAGCCGCCGACGCTATCCCCTTTGCACCCGGCACGCGAGGGAG
CCGGCGCAAGAAGAGGAATCGTGAGCGTCAACGGGTTGTGAGGCGGGCTG
ATTACGTCAAGAAGCTGCAAGGAATCGGTGCTCACGAGAAGAAGATGCAA
CATCGGTCTTTCGCCGCCATAAACGAGCGATTGGGAAAACTGGGATTGTC
TATTAAGTCAAAGAAAGCAGAGAGGGTGGGAACCACAGCGGTGGTCTAA
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Synonyms
Publications