NO04G03310, NO04G03310 (gene) Nannochloropsis oceanica

Overview
NameNO04G03310
Unique NameNO04G03310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr4:913993..915570 +

Link to JBrowse

Properties
Property NameValue
DescriptionDynactin subunit 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:913993..915570 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036859CAP-Gly_dom_sf
IPR000938CAP-Gly_domain
Homology
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: EWM28822.1 (cap-gly domain-containing linker protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 84.0 bits (206), Expect = 1.300e-12
Identity = 59/141 (41.84%), Postives = 74/141 (52.48%), Query Frame = 0 
Query:   24 ASSHTGSIRPSSPRS----SFGSRSPAAANNQALYA-AIPALPPSSHHRAELPLPRSPLDPSTPRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDN 160
            + +HTG++R +SP S    S GSRS   + NQAL A A   + PS   R+ L             VGS V+V HK    FG V + G  +F+   E +W GI L EP GNHDG  K  RYF C PKHGLF    +  V+ N
Sbjct:   23 SGAHTGNVRSASPSSTRNASIGSRS---SRNQALQASAFRDVSPSRSIRSNL------------FVGSNVRVLHKGHPQFGVVKFKGNVNFA---EGVWVGIALKEPVGNHDGYLKQTRYFQCAPKHGLFVRAESCDVLMN 145
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_015252449.1 (PREDICTED: dynactin subunit 1-like isoform X1 [Cyprinodon variegatus])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYFTCE  HG+F     I+VID+  A  A SP+   + LA
Sbjct:   13 PKIGSMVEVTGKGQR--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFTCEENHGIFVRSSQIQVIDDGSA--ATSPETPESTLA 100
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_015252450.1 (PREDICTED: dynactin subunit 1-like isoform X2 [Cyprinodon variegatus])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYFTCE  HG+F     I+VID+  A  A SP+   + LA
Sbjct:   13 PKIGSMVEVTGKGQR--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFTCEENHGIFVRSSQIQVIDDGSA--ATSPETPESTLA 100
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_015252451.1 (PREDICTED: dynactin subunit 1-like isoform X3 [Cyprinodon variegatus])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYFTCE  HG+F     I+VID+  A  A SP+   + LA
Sbjct:   13 PKIGSMVEVTGKGQR--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFTCEENHGIFVRSSQIQVIDDGSA--ATSPETPESTLA 100
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_015252452.1 (PREDICTED: dynactin subunit 1-like isoform X4 [Cyprinodon variegatus])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYFTCE  HG+F     I+VID+  A  A SP+   + LA
Sbjct:   13 PKIGSMVEVTGKGQR--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFTCEENHGIFVRSSQIQVIDDGSA--ATSPETPESTLA 100
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_015252453.1 (PREDICTED: dynactin subunit 1-like isoform X5 [Cyprinodon variegatus])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYFTCE  HG+F     I+VID+  A  A SP+   + LA
Sbjct:   13 PKIGSMVEVTGKGQR--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFTCEENHGIFVRSSQIQVIDDGSA--ATSPETPESTLA 100
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_015252454.1 (PREDICTED: dynactin subunit 1-like isoform X6 [Cyprinodon variegatus])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYFTCE  HG+F     I+VID+  A  A SP+   + LA
Sbjct:   13 PKIGSMVEVTGKGQR--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFTCEENHGIFVRSSQIQVIDDGSA--ATSPETPESTLA 100
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: KKF21931.1 (Dynactin subunit 1 [Larimichthys crocea])

HSP 1 Score: 75.5 bits (184), Expect = 4.500e-10
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVID---NFEAPLAYSPKLHSTPLAS-----ASTASSVLGALAQSPNTRRADNLSSPRGAATVPQMLCPS 217
            P++GS V+V  K +   G V Y+G T F++     W G+ L+EP G +DG  +G+RYFTCE  HG+F     I+V+D   +  +P      +H TP  S      S ASS+ G ++++        LSS +GA   P M  PS
Sbjct:   33 PKIGSVVEVIGKGQR--GTVAYIGATLFAS---GKWVGVILNEPKGKNDGTVQGKRYFTCEENHGIFVRQSQIQVVDDGSSATSPDTPESDIHETPKTSKQASRESLASSLSGDVSEA-------GLSSHQGALGAPVMPQPS 163
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_007564658.1 (PREDICTED: dynactin subunit 1-like isoform X3 [Poecilia formosa] >XP_014867580.1 PREDICTED: dynactin subunit 1-like isoform X6 [Poecilia mexicana] >XP_014871471.1 PREDICTED: dynactin subunit 1-like isoform X6 [Poecilia latipinna])

HSP 1 Score: 75.1 bits (183), Expect = 5.800e-10
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS+V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYF+CE  HG+F     I+VID+  A  A SP+     LA
Sbjct:   13 PKIGSKVEVTGKGQQ--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFSCEENHGIFVRSSQIQVIDDGSA--ATSPETPDASLA 100
[Close]
BLAST of NO04G03310 vs. NCBI_GenBank
Match: XP_014867575.1 (PREDICTED: dynactin subunit 1-like isoform X1 [Poecilia mexicana])

HSP 1 Score: 75.1 bits (183), Expect = 5.800e-10
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPKLHSTPLA 177
            P++GS+V+V+ K +   G V Y+G T F++     W GI LDEP G +DG  +G+RYF+CE  HG+F     I+VID+  A  A SP+     LA
Sbjct:   13 PKIGSKVEVTGKGQQ--GTVAYIGATLFAS---GKWVGIILDEPKGKNDGTVQGKRYFSCEENHGIFVRSSQIQVIDDGSA--ATSPETPDASLA 100
The following BLAST results are available for this feature:
BLAST of NO04G03310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28822.11.300e-1241.84cap-gly domain-containing linker protein 1 [Nannoc... [more]
XP_015252449.13.400e-1044.21PREDICTED: dynactin subunit 1-like isoform X1 [Cyp... [more]
XP_015252450.13.400e-1044.21PREDICTED: dynactin subunit 1-like isoform X2 [Cyp... [more]
XP_015252451.13.400e-1044.21PREDICTED: dynactin subunit 1-like isoform X3 [Cyp... [more]
XP_015252452.13.400e-1044.21PREDICTED: dynactin subunit 1-like isoform X4 [Cyp... [more]
XP_015252453.13.400e-1044.21PREDICTED: dynactin subunit 1-like isoform X5 [Cyp... [more]
XP_015252454.13.400e-1044.21PREDICTED: dynactin subunit 1-like isoform X6 [Cyp... [more]
KKF21931.14.500e-1036.36Dynactin subunit 1 [Larimichthys crocea][more]
XP_007564658.15.800e-1043.16PREDICTED: dynactin subunit 1-like isoform X3 [Poe... [more]
XP_014867575.15.800e-1043.16PREDICTED: dynactin subunit 1-like isoform X1 [Poe... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03310.1NO04G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538233gene_2105Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03310.1NO04G03310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03310 ID=NO04G03310|Name=NO04G03310|organism=Nannochloropsis oceanica|type=gene|length=1578bp
ATGCGTCCTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCC
CTCCTTGCCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGT
CTTCGCCCCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAAT
CAAGCCCTTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCG
TGCTGAGCTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGG
TCGGTTCCCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGG
GTGCTGTATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTG
GGCAGGCATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTA
AAGGAGAAAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCAC
CTCGGCAACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTC
TCCTAAACTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTG
TCCTAGGTGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTG
TCCTCTCCTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCAC
TCACAGCATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACA
CTTATACCAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATC
AACGACGAGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCC
CCCTGCCGCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGC
TAGATGTGACCATTCTTGAGgtgggtttatgcgctggctatggagggaca
tatacttgggcggggaggagcaggggaagagagcagcgcgacgtaattga
taaaactcacatacggacaccctccctttcccccctgtttttttattcca
cacagCAAATTTTGTACTCCTCGGCGGTCCATGAAAAGCTTGCTGGGATG
ATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAGGTTGCAGCAGGTGCG
AGAAGACACGACCGCCCAGCTGACCCGTGAGACGAGTTTCATGTCTACCT
TCGTCAATGGGGCCATCGTAAGGATTGAAGACAAGgtacgtcaagattac
tccctctcatcctcctatctcttggatggcttgtgtctgcacagtggagg
ggataggcgttccaaaggtgtcatttgttgtgattgtcagccatctgaac
gtaggcacatccatcctcagttgacccatcgtttctccccctccaaaccc
acctatctacagATCACGGAGCTCAAGGATAGTATCATCATAAATGCTGT
GGCAGCTACCGGTAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGC
AAGCCCTTGCAGCGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTG
CAGGAGGAGGTGAAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCAT
GTCTGAGGAGGAGACGGAGGGCCCCTAG
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protein sequence of NO04G03310.1

>NO04G03310.1-protein ID=NO04G03310.1-protein|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MRPPPVHSRVENDILSPSLPHRRASSHTGSIRPSSPRSSFGSRSPAAANN
QALYAAIPALPPSSHHRAELPLPRSPLDPSTPRVGSRVKVSHKQKTLFGR
VLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQH
LGNIKVIDNFEAPLAYSPKLHSTPLASASTASSVLGALAQSPNTRRADNL
SSPRGAATVPQMLCPSTHSMSRRTITSPVDNTNTYTSTRRNSGSINSTNI
NDECIQSITLPDTARKPPAAETASIIATNRDELLDVTILEQILYSSAVHE
KLAGMISEEVEKKVQERLQQVREDTTAQLTRETSFMSTFVNGAIVRIEDK
ITELKDSIIINAVAATGSREDQEQMERNKQALAAIMEIASATKQQLQEEV
KQRAEAIQQLCIMSEEETEGP*
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Synonyms
Publications