NO04G03310.1, NO04G03310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03310.1
Unique NameNO04G03310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1266
Alignment locationchr4:913993..915570 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:913993..915570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03310.1 vs.
Match: KKF21931.1 (Dynactin subunit 1 [Larimichthys crocea])

HSP 1 Score: 75.5 bits (184), Expect = 4.500e-10
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 0
Query:   82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVID---NFEAPLAYSPKLHSTPLAS-----ASTASSVLGALAQSPNTRRADNLSSPRGAATVPQMLCPS 217
            P++GS V+V  K +   G V Y+G T F++     W G+ L+EP G +DG  +G+RYFTCE  HG+F     I+V+D   +  +P      +H TP  S      S ASS+ G ++++        LSS +GA   P M  PS
Sbjct:   33 PKIGSVVEVIGKGQR--GTVAYIGATLFASGK---WVGVILNEPKGKNDGTVQGKRYFTCEENHGIFVRQSQIQVVDDGSSATSPDTPESDIHETPKTSKQASRESLASSLSGDVSEA-------GLSSHQGALGAPVMPQPS 163          
The following BLAST results are available for this feature:
BLAST of NO04G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KKF21931.14.500e-1036.36Dynactin subunit 1 [Larimichthys crocea][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03310NO04G03310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03310.1NO04G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03310.1.cds1NO04G03310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03310.1.cds2NO04G03310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03310.1.cds3NO04G03310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03310.1 ID=NO04G03310.1|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
ATGCGTCCTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCC
CTCCTTGCCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGT
CTTCGCCCCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAAT
CAAGCCCTTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCG
TGCTGAGCTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGG
TCGGTTCCCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGG
GTGCTGTATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTG
GGCAGGCATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTA
AAGGAGAAAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCAC
CTCGGCAACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTC
TCCTAAACTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTG
TCCTAGGTGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTG
TCCTCTCCTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCAC
TCACAGCATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACA
CTTATACCAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATC
AACGACGAGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCC
CCCTGCCGCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGC
TAGATGTGACCATTCTTGAGCAAATTTTGTACTCCTCGGCGGTCCATGAA
AAGCTTGCTGGGATGATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAG
GTTGCAGCAGGTGCGAGAAGACACGACCGCCCAGCTGACCCGTGAGACGA
GTTTCATGTCTACCTTCGTCAATGGGGCCATCGTAAGGATTGAAGACAAG
ATCACGGAGCTCAAGGATAGTATCATCATAAATGCTGTGGCAGCTACCGG
TAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGCAAGCCCTTGCAG
CGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTGCAGGAGGAGGTG
AAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCATGTCTGAGGAGGA
GACGGAGGGCCCCTAG
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protein sequence of NO04G03310.1

>NO04G03310.1-protein ID=NO04G03310.1-protein|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MRPPPVHSRVENDILSPSLPHRRASSHTGSIRPSSPRSSFGSRSPAAANN
QALYAAIPALPPSSHHRAELPLPRSPLDPSTPRVGSRVKVSHKQKTLFGR
VLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQH
LGNIKVIDNFEAPLAYSPKLHSTPLASASTASSVLGALAQSPNTRRADNL
SSPRGAATVPQMLCPSTHSMSRRTITSPVDNTNTYTSTRRNSGSINSTNI
NDECIQSITLPDTARKPPAAETASIIATNRDELLDVTILEQILYSSAVHE
KLAGMISEEVEKKVQERLQQVREDTTAQLTRETSFMSTFVNGAIVRIEDK
ITELKDSIIINAVAATGSREDQEQMERNKQALAAIMEIASATKQQLQEEV
KQRAEAIQQLCIMSEEETEGP*
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mRNA from alignment at chr4:913993..915570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03310.1 ID=NO04G03310.1|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at chr4:913993..915570+ (Nannochloropsis oceanica)
ATGCGTCCTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCC CTCCTTGCCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGT CTTCGCCCCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAAT CAAGCCCTTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCG TGCTGAGCTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGG TCGGTTCCCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGG GTGCTGTATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTG GGCAGGCATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTA AAGGAGAAAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCAC CTCGGCAACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTC TCCTAAACTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTG TCCTAGGTGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTG TCCTCTCCTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCAC TCACAGCATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACA CTTATACCAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATC AACGACGAGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCC CCCTGCCGCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGC TAGATGTGACCATTCTTGAGGTGGGTTTATGCGCTGGCTATGGAGGGACA TATACTTGGGCGGGGAGGAGCAGGGGAAGAGAGCAGCGCGACGTAATTGA TAAAACTCACATACGGACACCCTCCCTTTCCCCCCTGTTTTTTTATTCCA CACAGCAAATTTTGTACTCCTCGGCGGTCCATGAAAAGCTTGCTGGGATG ATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAGGTTGCAGCAGGTGCG AGAAGACACGACCGCCCAGCTGACCCGTGAGACGAGTTTCATGTCTACCT TCGTCAATGGGGCCATCGTAAGGATTGAAGACAAGGTACGTCAAGATTAC TCCCTCTCATCCTCCTATCTCTTGGATGGCTTGTGTCTGCACAGTGGAGG GGATAGGCGTTCCAAAGGTGTCATTTGTTGTGATTGTCAGCCATCTGAAC GTAGGCACATCCATCCTCAGTTGACCCATCGTTTCTCCCCCTCCAAACCC ACCTATCTACAGATCACGGAGCTCAAGGATAGTATCATCATAAATGCTGT GGCAGCTACCGGTAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGC AAGCCCTTGCAGCGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTG CAGGAGGAGGTGAAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCAT GTCTGAGGAGGAGACGGAGGGCCCCTAG
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Coding sequence (CDS) from alignment at chr4:913993..915570+

>NO04G03310.1 ID=NO04G03310.1|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr4:913993..915570+ (Nannochloropsis oceanica)
ATGCGTCCTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCC
CTCCTTGCCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGT
CTTCGCCCCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAAT
CAAGCCCTTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCG
TGCTGAGCTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGG
TCGGTTCCCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGG
GTGCTGTATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTG
GGCAGGCATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTA
AAGGAGAAAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCAC
CTCGGCAACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTC
TCCTAAACTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTG
TCCTAGGTGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTG
TCCTCTCCTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCAC
TCACAGCATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACA
CTTATACCAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATC
AACGACGAGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCC
CCCTGCCGCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGC
TAGATGTGACCATTCTTGAGCAAATTTTGTACTCCTCGGCGGTCCATGAA
AAGCTTGCTGGGATGATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAG
GTTGCAGCAGGTGCGAGAAGACACGACCGCCCAGCTGACCCGTGAGACGA
GTTTCATGTCTACCTTCGTCAATGGGGCCATCGTAAGGATTGAAGACAAG
ATCACGGAGCTCAAGGATAGTATCATCATAAATGCTGTGGCAGCTACCGG
TAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGCAAGCCCTTGCAG
CGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTGCAGGAGGAGGTG
AAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCATGTCTGAGGAGGA
GACGGAGGGCCCCTAG
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Synonyms
Publications