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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:913993..915570 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03310.1 vs.
Match: KKF21931.1 (Dynactin subunit 1 [Larimichthys crocea]) HSP 1 Score: 75.5 bits (184), Expect = 4.500e-10 Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 0
Query: 82 PRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVID---NFEAPLAYSPKLHSTPLAS-----ASTASSVLGALAQSPNTRRADNLSSPRGAATVPQMLCPS 217
P++GS V+V K + G V Y+G T F++ W G+ L+EP G +DG +G+RYFTCE HG+F I+V+D + +P +H TP S S ASS+ G ++++ LSS +GA P M PS
Sbjct: 33 PKIGSVVEVIGKGQR--GTVAYIGATLFASGK---WVGVILNEPKGKNDGTVQGKRYFTCEENHGIFVRQSQIQVVDDGSSATSPDTPESDIHETPKTSKQASRESLASSLSGDVSEA-------GLSSHQGALGAPVMPQPS 163
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03310.1 ID=NO04G03310.1|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp ATGCGTCCTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCC CTCCTTGCCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGT CTTCGCCCCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAAT CAAGCCCTTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCG TGCTGAGCTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGG TCGGTTCCCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGG GTGCTGTATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTG GGCAGGCATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTA AAGGAGAAAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCAC CTCGGCAACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTC TCCTAAACTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTG TCCTAGGTGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTG TCCTCTCCTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCAC TCACAGCATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACA CTTATACCAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATC AACGACGAGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCC CCCTGCCGCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGC TAGATGTGACCATTCTTGAGCAAATTTTGTACTCCTCGGCGGTCCATGAA AAGCTTGCTGGGATGATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAG GTTGCAGCAGGTGCGAGAAGACACGACCGCCCAGCTGACCCGTGAGACGA GTTTCATGTCTACCTTCGTCAATGGGGCCATCGTAAGGATTGAAGACAAG ATCACGGAGCTCAAGGATAGTATCATCATAAATGCTGTGGCAGCTACCGG TAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGCAAGCCCTTGCAG CGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTGCAGGAGGAGGTG AAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCATGTCTGAGGAGGA GACGGAGGGCCCCTAG back to topprotein sequence of NO04G03310.1 >NO04G03310.1-protein ID=NO04G03310.1-protein|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp MRPPPVHSRVENDILSPSLPHRRASSHTGSIRPSSPRSSFGSRSPAAANN QALYAAIPALPPSSHHRAELPLPRSPLDPSTPRVGSRVKVSHKQKTLFGR VLYVGQTHFSTRPETMWAGIRLDEPSGNHDGEFKGERYFTCEPKHGLFQH LGNIKVIDNFEAPLAYSPKLHSTPLASASTASSVLGALAQSPNTRRADNL SSPRGAATVPQMLCPSTHSMSRRTITSPVDNTNTYTSTRRNSGSINSTNI NDECIQSITLPDTARKPPAAETASIIATNRDELLDVTILEQILYSSAVHE KLAGMISEEVEKKVQERLQQVREDTTAQLTRETSFMSTFVNGAIVRIEDK ITELKDSIIINAVAATGSREDQEQMERNKQALAAIMEIASATKQQLQEEV KQRAEAIQQLCIMSEEETEGP* back to topmRNA from alignment at chr4:913993..915570+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03310.1 ID=NO04G03310.1|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at chr4:913993..915570+ (Nannochloropsis oceanica) ATGCGTCCTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCC
CTCCTTGCCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGT
CTTCGCCCCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAAT
CAAGCCCTTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCG
TGCTGAGCTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGG
TCGGTTCCCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGG
GTGCTGTATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTG
GGCAGGCATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTA
AAGGAGAAAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCAC
CTCGGCAACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTC
TCCTAAACTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTG
TCCTAGGTGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTG
TCCTCTCCTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCAC
TCACAGCATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACA
CTTATACCAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATC
AACGACGAGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCC
CCCTGCCGCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGC
TAGATGTGACCATTCTTGAGGTGGGTTTATGCGCTGGCTATGGAGGGACA
TATACTTGGGCGGGGAGGAGCAGGGGAAGAGAGCAGCGCGACGTAATTGA
TAAAACTCACATACGGACACCCTCCCTTTCCCCCCTGTTTTTTTATTCCA
CACAGCAAATTTTGTACTCCTCGGCGGTCCATGAAAAGCTTGCTGGGATG
ATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAGGTTGCAGCAGGTGCG
AGAAGACACGACCGCCCAGCTGACCCGTGAGACGAGTTTCATGTCTACCT
TCGTCAATGGGGCCATCGTAAGGATTGAAGACAAGGTACGTCAAGATTAC
TCCCTCTCATCCTCCTATCTCTTGGATGGCTTGTGTCTGCACAGTGGAGG
GGATAGGCGTTCCAAAGGTGTCATTTGTTGTGATTGTCAGCCATCTGAAC
GTAGGCACATCCATCCTCAGTTGACCCATCGTTTCTCCCCCTCCAAACCC
ACCTATCTACAGATCACGGAGCTCAAGGATAGTATCATCATAAATGCTGT
GGCAGCTACCGGTAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGC
AAGCCCTTGCAGCGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTG
CAGGAGGAGGTGAAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCAT
GTCTGAGGAGGAGACGGAGGGCCCCTAG back to topCoding sequence (CDS) from alignment at chr4:913993..915570+ >NO04G03310.1 ID=NO04G03310.1|Name=NO04G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr4:913993..915570+ (Nannochloropsis oceanica) ATGCGTCCTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCC CTCCTTGCCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGT CTTCGCCCCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAAT CAAGCCCTTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCG TGCTGAGCTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGG TCGGTTCCCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGG GTGCTGTATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTG GGCAGGCATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTA AAGGAGAAAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCAC CTCGGCAACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTC TCCTAAACTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTG TCCTAGGTGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTG TCCTCTCCTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCAC TCACAGCATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACA CTTATACCAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATC AACGACGAGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCC CCCTGCCGCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGC TAGATGTGACCATTCTTGAGCAAATTTTGTACTCCTCGGCGGTCCATGAA AAGCTTGCTGGGATGATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAG GTTGCAGCAGGTGCGAGAAGACACGACCGCCCAGCTGACCCGTGAGACGA GTTTCATGTCTACCTTCGTCAATGGGGCCATCGTAAGGATTGAAGACAAG ATCACGGAGCTCAAGGATAGTATCATCATAAATGCTGTGGCAGCTACCGG TAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGCAAGCCCTTGCAG CGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTGCAGGAGGAGGTG AAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCATGTCTGAGGAGGA GACGGAGGGCCCCTAG back to top
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