NO04G03290, NO04G03290 (gene) Nannochloropsis oceanica

Overview
NameNO04G03290
Unique NameNO04G03290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr4:912480..913526 -

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Properties
Property NameValue
DescriptionTMEM85/ER membrane protein complex subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:912480..913526 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009445DUF1077_TMEM85
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G03290 vs. NCBI_GenBank
Match: EWM28752.1 (Protein of unknown function DUF1077, TMEM85 [Nannochloropsis gaditana])

HSP 1 Score: 199.5 bits (506), Expect = 8.400e-48
Identity = 118/170 (69.41%), Postives = 135/170 (79.41%), Query Frame = 0
Query:    6 GFASKLVSIEVEKPLGYYRE--SGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSGVPL 174
            G +S  ++  VEKPL  Y E   G A  RQV EAR GK + EE+  ER LKQ++AM IAQ+PAK LAMQGFMMYMTGSSVSIISIMVVGMSLLNS ++L A NQ FE++ADG  SL+LPKL+Y+ALN VFLGMGLYKCSSLGLLPSTA DF+SRLP S A RAEVS VP+
Sbjct:   11 GASSSSLTQAVEKPLASYHEVHEGLA-SRQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP-STAYRAEVSSVPV 178          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: XP_009831024.1 (hypothetical protein H257_07261 [Aphanomyces astaci] >ETV79183.1 hypothetical protein H257_07261 [Aphanomyces astaci])

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-17
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 0
Query:   53 LKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSGVPL 174
            LKQ+ A  IAQ+P K L   G MMYM+GSS++I SIM+  M++ N  K+L   N  F  L DG+ +L   K+ ++  NLV +G+ LYKC ++GLLP+T+AD+   LP   A     S  P+
Sbjct:   43 LKQKRASEIAQAPFKGLFQTGLMMYMSGSSINIFSIMITAMAIFNPLKALFNVNGAFASLEDGKMNLAQSKVTFVVANLVAIGVALYKCGTMGLLPTTSADWTWLLPVKQALETSASATPV 163          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: XP_002967019.1 (ER membrane protein complex subunit 4 [Selaginella moellendorffii] >EFJ31618.1 hypothetical protein SELMODRAFT_168891 [Selaginella moellendorffii])

HSP 1 Score: 97.1 bits (240), Expect = 5.900e-17
Identity = 65/153 (42.48%), Postives = 95/153 (62.09%), Query Frame = 0
Query:    7 FASKLVSIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLP 160
            F     S EV  P GY R  GA+   ++++A A +   ++   E + KQ+ A  IAQ+P + L M GFMM+M G++V + SI +   +L     +L    + FE   D +T +L+PKLL+IA+NLV LGMGL+K +SLGLLP+ A+D+VS LP
Sbjct:   14 FGDGASSREVADPPGYSR--GASS--EIEDASAAR---QKEKVEASWKQQKAWEIAQAPFRNLFMMGFMMWMAGNTVHLFSIGITFSALWQPISALQGIGKVFEPYKDARTDVLMPKLLFIAMNLVALGMGLWKLNSLGLLPTHASDWVSSLP 159          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: XP_002960990.1 (ER membrane protein complex subunit 4 [Selaginella moellendorffii] >EFJ38529.1 hypothetical protein SELMODRAFT_402529 [Selaginella moellendorffii])

HSP 1 Score: 97.1 bits (240), Expect = 5.900e-17
Identity = 65/153 (42.48%), Postives = 95/153 (62.09%), Query Frame = 0
Query:    7 FASKLVSIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLP 160
            F     S EV  P GY R  GA+   ++++A A +   ++   E + KQ+ A  IAQ+P + L M GFMM+M G++V + SI +   +L     +L    + FE   D +T +L+PKLL+IA+NLV LGMGL+K +SLGLLP+ A+D+VS LP
Sbjct:   14 FGDGTSSREVADPPGYSR--GASS--EIEDASAAR---QKEKVEASWKQQKAWEIAQAPFRNLFMMGFMMWMAGNTVHLFSIGITFSALWQPISALQGIGKVFEPYKDARTDVLMPKLLFIAMNLVALGMGLWKLNSLGLLPTHASDWVSSLP 159          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: XP_009769930.1 (PREDICTED: ER membrane protein complex subunit 4 [Nicotiana sylvestris] >XP_016465045.1 PREDICTED: ER membrane protein complex subunit 4-like [Nicotiana tabacum])

HSP 1 Score: 97.1 bits (240), Expect = 5.900e-17
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = 0
Query:   13 SIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSG 171
            S ++  PLG+ R S        Q+      S E+ N E   K + A  +AQ+PAK L M GFMM+M GS+V + SI +   +L     +L    + FE   D +  LL PKLL+IALNLV LG+G++K ++LGLLP+ A+D+VS LP   A   E SG
Sbjct:   27 SRDIPDPLGFTRSS--------QDQDDSTLSREKKNAEANWKSQKAWEVAQAPAKNLMMMGFMMWMAGSTVHLFSIGITVSALWQPLSALQGVGKVFEPYKDSKVDLLAPKLLFIALNLVGLGLGVWKLNTLGLLPTHASDWVSSLPP--AQEVEYSG 174          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: XP_009615881.1 (PREDICTED: ER membrane protein complex subunit 4 [Nicotiana tomentosiformis] >XP_016496988.1 PREDICTED: ER membrane protein complex subunit 4-like [Nicotiana tabacum])

HSP 1 Score: 96.7 bits (239), Expect = 7.700e-17
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = 0
Query:   13 SIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSG 171
            S ++  PLG+ R S        Q+      S E+ N E   K + A  +AQ+PAK L M GFMM+M GS+V + SI +   +L     +L    + FE   D +  LL PKLL+IALNLV LG+G++K ++LGLLP+ A+D+VS LP   A   E SG
Sbjct:   27 SRDIPDPLGFTRAS--------QDQDDSTLSREKKNAEANWKSQKAWEVAQAPAKNLMMMGFMMWMAGSTVHLFSIGITVSALWQPLSALQGVGKVFEPYKDSKVDLLAPKLLFIALNLVGLGLGVWKLNTLGLLPTHASDWVSSLPP--AQEVEYSG 174          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: XP_019225538.1 (PREDICTED: ER membrane protein complex subunit 4 [Nicotiana attenuata] >OIT32599.1 hypothetical protein A4A49_32650 [Nicotiana attenuata])

HSP 1 Score: 96.7 bits (239), Expect = 7.700e-17
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = 0
Query:   13 SIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSG 171
            S ++  PLG+ R S        Q+      S E+ N E   K + A  +AQ+PAK L M GFMM+M GS+V + SI +   +L     +L    + FE   D +  LL PKLL+IALNLV LG+G++K ++LGLLP+ A+D+VS LP   A   E SG
Sbjct:   27 SRDIPDPLGFARAS--------QDQDDSTLSREKKNAEANWKSQKAWEVAQAPAKNLMMMGFMMWMAGSTVHLFSIGITVSALWQPLSALQGVGKVFEPYKDSKVDLLAPKLLFIALNLVGLGLGVWKLNTLGLLPTHASDWVSSLPP--AQEVEYSG 174          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: PTQ40500.1 (hypothetical protein MARPO_0039s0015 [Marchantia polymorpha])

HSP 1 Score: 96.7 bits (239), Expect = 7.700e-17
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 0
Query:   15 EVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSGVPL 174
            +V  PLGY R S      +++E+  GKA  E    +   KQ  A   AQ+P K L M GFMM+M G++V + SI +   +L     +L A N+ FE   D +T  LLPKLL+IA+N   LG+GL+K +SLGLLP+ A+D+VS L           GVPL
Sbjct:   30 DVPDPLGYSRTS-----LELEESAPGKAKKE---IDANFKQAKAWETAQAPFKNLFMIGFMMWMAGNTVHLFSIGITFSALWQPISALQAVNKTFEPFKDARTDTLLPKLLFIAMNFAGLGLGLWKLNSLGLLPTHASDWVSTLAPPTNVEFSGGGVPL 180          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: CCA19414.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16
Identity = 59/151 (39.07%), Postives = 88/151 (58.28%), Query Frame = 0
Query:   18 KPLGYYRESGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEV 169
            +P+GY   S   +  +V      KA+    +  R LK++ A  I  +P K+L    FMM+M+GSS++I SIMV GM ++N+ KSL   N  F+ + DG   L  PKL+Y   N + + + +YKC SLGLLP+T+AD+   LP  ++T   V
Sbjct:   25 EPIGY---SKGIKSEKVTATTIAKAA----DSMRELKKKRASEIGMAPFKSLLQTAFMMWMSGSSINIFSIMVTGMVVMNTIKSLFDVNNAFDTVNDGVIDLTQPKLIYCLGNCISIALAIYKCGSLGLLPTTSADWTWLLPVKLSTEYSV 168          
BLAST of NO04G03290 vs. NCBI_GenBank
Match: OQR96471.1 (hypothetical protein ACHHYP_15807 [Achlya hypogyna])

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0
Query:   53 LKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSGVPL 174
            LK++ A  +A +P K L   GFMM+M+GSS++I SIM+  M+ +N  K+L   N  F  L DG+  LL  KL+++A N V +G+ LYKC ++GLLP+T++D+   LP   A  A  + VP+
Sbjct:   43 LKKKRANEVATAPFKGLFQTGFMMWMSGSSINIFSIMITAMAFVNPVKALFNINGAFAALDDGKLDLLQFKLIFVASNFVAIGVALYKCGTMGLLPTTSSDWTWLLPVKEAVEASSAAVPI 163          
The following BLAST results are available for this feature:
BLAST of NO04G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28752.18.400e-4869.41Protein of unknown function DUF1077, TMEM85 [Nanno... [more]
XP_009831024.11.600e-1743.80hypothetical protein H257_07261 [Aphanomyces astac... [more]
XP_002967019.15.900e-1742.48ER membrane protein complex subunit 4 [Selaginella... [more]
XP_002960990.15.900e-1742.48ER membrane protein complex subunit 4 [Selaginella... [more]
XP_009769930.15.900e-1741.77PREDICTED: ER membrane protein complex subunit 4 [... [more]
XP_009615881.17.700e-1741.77PREDICTED: ER membrane protein complex subunit 4 [... [more]
XP_019225538.17.700e-1741.77PREDICTED: ER membrane protein complex subunit 4 [... [more]
PTQ40500.17.700e-1742.14hypothetical protein MARPO_0039s0015 [Marchantia p... [more]
CCA19414.11.300e-1639.07conserved hypothetical protein [Albugo laibachii N... [more]
OQR96471.11.300e-1642.98hypothetical protein ACHHYP_15807 [Achlya hypogyna... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03290.1NO04G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579079gene_2104Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g61gene1869Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03290.1NO04G03290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03290 ID=NO04G03290|Name=NO04G03290|organism=Nannochloropsis oceanica|type=gene|length=1047bp
CCACAGCCAGCCGCATCGCCATAATCGGCTTCCTCCAGCCGTCATGCCTG
CGCATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAGTGGAGAAGCCG
CTGGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGACAAGTGCAAGA
GGCGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAAGGAACGTGCGC
TGAAGCAGCGGgtgagtacaggagtcacaacgtcgtgaactccccgcttc
ttgaacctagcctccctttcagtcttctctcaaatgggaagagtaaactc
ctctaaaagacttcgggctcctattcgactgggctgcgaaaccttttttg
atctcgatgcgaccagtaaaaaattaagaagcggccctcctttctccctc
ccatatctccactcaagtccctttccttatccccgtgaactcgtttcaac
aatcataccatcatagATGGCCATGGGTATCGCCCAGTCACCGGCCAAGA
CGCTTGCTATGCAGGGCTTCATGATGTACATGACGGGGTCGAGCGTGAGC
ATCATCTCAATCATGGTCGTGGGCATGAGCCTTCTCAACTCGTTTAAATC
TCTGCTCGCCACAAATCAATgtgagtacgtgtagacatgccttttcagta
ggagatttgataatgatggcgtgtctttgacacgaaaaaatgacaggtct
gaccacaaggatgtaacgactatctccactcagGTTTCGAAAAGCTTGCC
GACGGACAGACAAGCCTCCTCCTTCCCAAGCTCCTCTATATTGCTCTCAA
TCTAGTCTTTTTGGGCATGGGACTTTACAAGTGCAGCTCACTAGGCTTGC
TTCCCAGCACGGCTGCGGATTTCGTCTCGCGTCTACCGGCTTCTATCGCC
ACTCGGGCAGAAGTTTCAGGCGTTCCCCTCTAATAAACAGAAGCATAAGA
AATATAAAGTAAGGAGAGAATGCATCTTCCACTTCACAGAATGCATCTTC
TACTTCATGCCATCAGACAAATAGTGTGATCACTTTACTTTCTTTGT
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protein sequence of NO04G03290.1

>NO04G03290.1-protein ID=NO04G03290.1-protein|Name=NO04G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MPAHRGFASKLVSIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKE
RALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFK
SLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPST
AADFVSRLPASIATRAEVSGVPL*
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Synonyms
Publications