NO04G03290.1, NO04G03290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03290.1
Unique NameNO04G03290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length679
Alignment locationchr4:912480..913526 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:912480..913526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03290.1 vs.
Match: EWM28752.1 (Protein of unknown function DUF1077, TMEM85 [Nannochloropsis gaditana])

HSP 1 Score: 199.5 bits (506), Expect = 8.400e-48
Identity = 118/170 (69.41%), Postives = 135/170 (79.41%), Query Frame = 0 
Query:    6 GFASKLVSIEVEKPLGYYRE--SGAAQQRQVQEARAGKASIEEVNKERALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFKSLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPSTAADFVSRLPASIATRAEVSGVPL 174
            G +S  ++  VEKPL  Y E   G A  RQV EAR GK + EE+  ER LKQ++AM IAQ+PAK LAMQGFMMYMTGSSVSIISIMVVGMSLLNS ++L A NQ FE++ADG  SL+LPKL+Y+ALN VFLGMGLYKCSSLGLLPSTA DF+SRLP S A RAEVS VP+
Sbjct:   11 GASSSSLTQAVEKPLASYHEVHEGLAS-RQVHEARTGKVTNEEMTLERQLKQKVAMDIAQTPAKALAMQGFMMYMTGSSVSIISIMVVGMSLLNSAQALAAVNQRFERVADGHISLILPKLIYVALNCVFLGMGLYKCSSLGLLPSTAVDFISRLP-STAYRAEVSSVPV 178
The following BLAST results are available for this feature:
BLAST of NO04G03290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28752.18.400e-4869.41Protein of unknown function DUF1077, TMEM85 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03290NO04G03290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03290.1NO04G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03290.1.cds1NO04G03290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03290.1.cds2NO04G03290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03290.1.cds3NO04G03290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03290.1 ID=NO04G03290.1|Name=NO04G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=679bp
CCACAGCCAGCCGCATCGCCATAATCGGCTTCCTCCAGCCGTCATGCCTG
CGCATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAGTGGAGAAGCCG
CTGGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGACAAGTGCAAGA
GGCGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAAGGAACGTGCGC
TGAAGCAGCGGATGGCCATGGGTATCGCCCAGTCACCGGCCAAGACGCTT
GCTATGCAGGGCTTCATGATGTACATGACGGGGTCGAGCGTGAGCATCAT
CTCAATCATGGTCGTGGGCATGAGCCTTCTCAACTCGTTTAAATCTCTGC
TCGCCACAAATCAATGTTTCGAAAAGCTTGCCGACGGACAGACAAGCCTC
CTCCTTCCCAAGCTCCTCTATATTGCTCTCAATCTAGTCTTTTTGGGCAT
GGGACTTTACAAGTGCAGCTCACTAGGCTTGCTTCCCAGCACGGCTGCGG
ATTTCGTCTCGCGTCTACCGGCTTCTATCGCCACTCGGGCAGAAGTTTCA
GGCGTTCCCCTCTAATAAACAGAAGCATAAGAAATATAAAGTAAGGAGAG
AATGCATCTTCCACTTCACAGAATGCATCTTCTACTTCATGCCATCAGAC
AAATAGTGTGATCACTTTACTTTCTTTGT
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protein sequence of NO04G03290.1

>NO04G03290.1-protein ID=NO04G03290.1-protein|Name=NO04G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MPAHRGFASKLVSIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKE
RALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFK
SLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPST
AADFVSRLPASIATRAEVSGVPL*
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mRNA from alignment at chr4:912480..913526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03290.1 ID=NO04G03290.1|Name=NO04G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at chr4:912480..913526- (Nannochloropsis oceanica)
CCACAGCCAGCCGCATCGCCATAATCGGCTTCCTCCAGCCGTCATGCCTG
CGCATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAGTGGAGAAGCCG
CTGGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGACAAGTGCAAGA
GGCGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAAGGAACGTGCGC
TGAAGCAGCGGGTGAGTACAGGAGTCACAACGTCGTGAACTCCCCGCTTC
TTGAACCTAGCCTCCCTTTCAGTCTTCTCTCAAATGGGAAGAGTAAACTC
CTCTAAAAGACTTCGGGCTCCTATTCGACTGGGCTGCGAAACCTTTTTTG
ATCTCGATGCGACCAGTAAAAAATTAAGAAGCGGCCCTCCTTTCTCCCTC
CCATATCTCCACTCAAGTCCCTTTCCTTATCCCCGTGAACTCGTTTCAAC
AATCATACCATCATAGATGGCCATGGGTATCGCCCAGTCACCGGCCAAGA
CGCTTGCTATGCAGGGCTTCATGATGTACATGACGGGGTCGAGCGTGAGC
ATCATCTCAATCATGGTCGTGGGCATGAGCCTTCTCAACTCGTTTAAATC
TCTGCTCGCCACAAATCAATGTGAGTACGTGTAGACATGCCTTTTCAGTA
GGAGATTTGATAATGATGGCGTGTCTTTGACACGAAAAAATGACAGGTCT
GACCACAAGGATGTAACGACTATCTCCACTCAGGTTTCGAAAAGCTTGCC
GACGGACAGACAAGCCTCCTCCTTCCCAAGCTCCTCTATATTGCTCTCAA
TCTAGTCTTTTTGGGCATGGGACTTTACAAGTGCAGCTCACTAGGCTTGC
TTCCCAGCACGGCTGCGGATTTCGTCTCGCGTCTACCGGCTTCTATCGCC
ACTCGGGCAGAAGTTTCAGGCGTTCCCCTCTAATAAACAGAAGCATAAGA
AATATAAAGTAAGGAGAGAATGCATCTTCCACTTCACAGAATGCATCTTC
TACTTCATGCCATCAGACAAATAGTGTGATCACTTTACTTTCTTTGT
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Coding sequence (CDS) from alignment at chr4:912480..913526-

>NO04G03290.1 ID=NO04G03290.1|Name=NO04G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at chr4:912480..913526- (Nannochloropsis oceanica)
ATGCCTGCGCATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAGTGGA
GAAGCCGCTGGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGACAAG
TGCAAGAGGCGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAAGGAA
CGTGCGCTGAAGCAGCGGATGGCCATGGGTATCGCCCAGTCACCGGCCAA
GACGCTTGCTATGCAGGGCTTCATGATGTACATGACGGGGTCGAGCGTGA
GCATCATCTCAATCATGGTCGTGGGCATGAGCCTTCTCAACTCGTTTAAA
TCTCTGCTCGCCACAAATCAATGTTTCGAAAAGCTTGCCGACGGACAGAC
AAGCCTCCTCCTTCCCAAGCTCCTCTATATTGCTCTCAATCTAGTCTTTT
TGGGCATGGGACTTTACAAGTGCAGCTCACTAGGCTTGCTTCCCAGCACG
GCTGCGGATTTCGTCTCGCGTCTACCGGCTTCTATCGCCACTCGGGCAGA
AGTTTCAGGCGTTCCCCTCTAA
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Synonyms
Publications