NO04G03170, NO04G03170 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G03170
Unique Name	NO04G03170
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2202
Alignment location	chr4:866604..868805 +

Link to JBrowse

Properties


Property Name	Value
Description	Hydroxymethylglutaryl-lyase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:866604..868805 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005829	cytosol

Vocabulary: **Molecular Function**
Term	Definition
GO:0004419	hydroxymethylglutaryl-CoA lyase activity
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR027167	HMG-CoA_lyase
IPR000891	PYR_CT

Homology

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: EWM28707.1 (hydroxymethylglutaryl- lyase [Nannochloropsis gaditana])

HSP 1 Score: 468.8 bits (1205), Expect = 1.500e-128
Identity = 235/288 (81.60%), Postives = 258/288 (89.58%), Query Frame = 0

Query:   63 VGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            VGPRDGLQNE+AII T+ KVELI+RLS  GLQTIE TAFVSKKWVPQMGD+ EV+ RI K+PGV YPVLTPN KGFEDA++AGA EVSVFGAASEAFS KNINCS+AESL RF+PV AAAK+   K+RGYVSCVLGCPY+G +APEKVA+VA+ALYDMGCYEISLGDTIG GTPGSTRAMLLATKA IPA+HLAVHFHDTYGQALANILTALQEGI VVDASVAGLGGCPYA GASGNVATEDVVYML+GMG+ TGIDL++LA+AG FIS A GR TQSK GR +L K
Sbjct:   59 VGPRDGLQNEQAIISTETKVELIDRLSDTGLQTIEATAFVSKKWVPQMGDSTEVMARIHKKPGVGYPVLTPNLKGFEDALSAGATEVSVFGAASEAFSLKNINCSVAESLDRFQPVIAAAKAHKFKVRGYVSCVLGCPYEGKVAPEKVAKVARALYDMGCYEISLGDTIGTGTPGSTRAMLLATKAFIPAEHLAVHFHDTYGQALANILTALQEGIGVVDASVAGLGGCPYAAGASGNVATEDVVYMLHGMGICTGIDLSSLARAGHFISEAVGRNTQSKAGREILKK 346

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: WP_063088345.1 (MULTISPECIES: hydroxymethylglutaryl-CoA lyase [Thalassospira] >KZC99806.1 hydroxymethylglutaryl-CoA lyase [Thalassospira sp. MCCC 1A02898] >ONH86025.1 hydroxymethylglutaryl-CoA lyase [Thalassospira sp. MCCC 1A02803])

HSP 1 Score: 419.9 bits (1078), Expect = 8.100e-114
Identity = 207/301 (68.77%), Postives = 240/301 (79.73%), Query Frame = 0

Query:   50 LFPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            L  ++PS V+IVEVGPRDGLQNEKA++PT  KVELI+RL+ AGL  IE TAFVS KWVPQM D  +V+ +I ++PGV YPVL PN KG E A+AAGA EV+VFGAASE+FSQKNINCSIAESL RFRPVA AA+  GL +RGYVSCVLGCPY+G IAPEKVAEVAKALYDMGCYEISLGDTIG GTP   +AM+ A    +P + LA HFHDTYGQALAN+L  LQ G+AV+D+SVAGLGGCPYA GASGNVATEDVVYMLNG+G+ TGIDL  LA+ G +I     + + SK    +  K
Sbjct:    3 LISDLPSRVKIVEVGPRDGLQNEKAMVPTATKVELIHRLNDAGLSVIEATAFVSPKWVPQMADAPDVMAQITRKPGVTYPVLAPNMKGLEAAIAAGATEVAVFGAASESFSQKNINCSIAESLDRFRPVADAARDAGLSVRGYVSCVLGCPYEGDIAPEKVAEVAKALYDMGCYEISLGDTIGTGTPAKAQAMITAVARHVPTEKLAAHFHDTYGQALANLLAVLQMGVAVIDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTGIDLEKLAETGSWICDQIAKSSASKVNLALAAK 303

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: WP_008890573.1 (hydroxymethylglutaryl-CoA lyase [Thalassospira profundimaris] >EKF08088.1 hydroxymethylglutaryl-CoA lyase [Thalassospira profundimaris WP0211])

HSP 1 Score: 417.9 bits (1073), Expect = 3.100e-113
Identity = 207/301 (68.77%), Postives = 239/301 (79.40%), Query Frame = 0

Query:   50 LFPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            L  ++PS V+IVEVGPRDGLQNEKA++PT  KVELI+RL+ AGL  IE TAFVS KWVPQM D  +V+ +I ++PGV YPVL PN KG E AVAAGA EV+VFGAASE+FSQKNINCSIAESL RFRPVA AA+  GL +RGYVSCVLGCPY+G IAPEKVAEVAKALYDMGCYEISLGDTIG GTP   +AM+ A    +P + LA HFHDTYGQALAN+L  LQ G+ V+D+SVAGLGGCPYA GASGNVATEDVVYMLNG+G+ TGIDL  LA+ G +I     + + SK    +  K
Sbjct:    3 LLSDLPSHVKIVEVGPRDGLQNEKAMVPTATKVELIHRLNDAGLSVIEATAFVSPKWVPQMADAPDVMAQITRKPGVTYPVLAPNMKGLEAAVAAGATEVAVFGAASESFSQKNINCSIAESLDRFRPVADAARDAGLAVRGYVSCVLGCPYEGDIAPEKVAEVAKALYDMGCYEISLGDTIGTGTPAKAQAMITAVARHVPTEKLAAHFHDTYGQALANLLAVLQMGVTVIDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTGIDLEKLAETGSWICDQIAKSSASKVNLALAAK 303

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: KXJ58287.1 (hydroxymethylglutaryl-CoA lyase [Thalassospira sp. Nap_22])

HSP 1 Score: 417.5 bits (1072), Expect = 4.000e-113
Identity = 207/301 (68.77%), Postives = 238/301 (79.07%), Query Frame = 0

Query:   50 LFPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            L   +PS V+IVEVGPRDGLQNEKA++PT  KVELI+RL+ AGL  IE TAFVS KWVPQM D  +V+ +I ++PGV YPVL PN KG E A+AAGA EV+VFGAASE+FSQKNINCSIAESL RFRPVA AA+  GL +RGYVSCVLGCPY+G IAPEKVAEVAKALYDMGCYEISLGDTIG GTP   +AM+ A    IP + LA HFHDTYGQALAN+L  LQ G+A +D+SVAGLGGCPYA GASGNVATEDVVYMLNG+G+ TGIDL  LA+ G +I     + + SK    +  K
Sbjct:    3 LLSGLPSHVKIVEVGPRDGLQNEKAMVPTATKVELIHRLNDAGLSVIEATAFVSPKWVPQMADAPDVMAQITRKPGVTYPVLAPNMKGLEAAIAAGATEVAVFGAASESFSQKNINCSIAESLDRFRPVADAARDAGLAVRGYVSCVLGCPYEGDIAPEKVAEVAKALYDMGCYEISLGDTIGTGTPAKAQAMIAAVAKDIPTEKLAAHFHDTYGQALANLLAVLQMGVATIDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTGIDLEKLAETGSWICDQIAKSSASKVNLALAAK 303

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: WP_062957457.1 (hydroxymethylglutaryl-CoA lyase [Thalassospira sp. MCCC 1A01148] >KZB70361.1 hydroxymethylglutaryl-CoA lyase [Thalassospira sp. MCCC 1A01148])

HSP 1 Score: 417.5 bits (1072), Expect = 4.000e-113
Identity = 207/301 (68.77%), Postives = 237/301 (78.74%), Query Frame = 0

Query:   50 LFPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            L  ++PS V+IVEVGPRDGLQNEKA++PT  KVELI+RL+ AGL  IE TAFVS KWVPQM D  +V+ RI ++PGV YPVL PN KG E A+AAGA EV+VFGAASE+FSQKNINCSIAESL RFRPVA AA+  GL +RGYVSCVLGCPY+G IAPEKVAEVAKALYDMGCYEISLGDTIG GTP   +AM+ A    +P + LA HFHDTYGQALAN+L  LQ G+A +D+SVAGLGGCPYA GASGNVATEDVVYMLNG+G+ T IDL  LA  G +I    G  + SK    +  K
Sbjct:    3 LISDLPSHVKIVEVGPRDGLQNEKAMVPTQTKVELIHRLNDAGLSVIEATAFVSPKWVPQMADAPDVMARITRKPGVTYPVLAPNMKGLEAAIAAGATEVAVFGAASESFSQKNINCSIAESLDRFRPVADAAREAGLAVRGYVSCVLGCPYEGDIAPEKVAEVAKALYDMGCYEISLGDTIGTGTPAKAQAMIAAVAKHVPTEKLAAHFHDTYGQALANLLAVLQMGVATIDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTSIDLEKLAATGNWICDLIGNSSASKVNLALRAK 303

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: WP_064789743.1 (hydroxymethylglutaryl-CoA lyase [Thalassospira profundimaris] >OAZ12501.1 hydroxymethylglutaryl-CoA lyase [Thalassospira profundimaris])

HSP 1 Score: 417.5 bits (1072), Expect = 4.000e-113
Identity = 206/301 (68.44%), Postives = 240/301 (79.73%), Query Frame = 0

Query:   50 LFPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            L  ++PS V+IVEVGPRDGLQNEKA++PT  KVELI+RL+ AGL  IE TAFVS KWVPQM D  +V+ +I ++PGV YPVL PN KG E A+AAGA EV+VFGAASE+FSQKNINCSIAESL RFRPVA AA++ GL +RGYVSCVLGCPY+G IAPEKVAEV KALYDMGCYEISLGDTIG GTP   +AM+ A    +P + LA HFHDTYGQALAN+L  LQ G+AV+D+SVAGLGGCPYA GASGNVATEDVVYMLNG+G+ TGIDL  LA+ G +I     + + SK    +  K
Sbjct:    3 LISDLPSRVKIVEVGPRDGLQNEKAMVPTATKVELIHRLNDAGLSVIEATAFVSPKWVPQMADAPDVMAQITRKPGVTYPVLAPNMKGLEAAIAAGATEVAVFGAASESFSQKNINCSIAESLDRFRPVADAARNSGLAVRGYVSCVLGCPYEGDIAPEKVAEVTKALYDMGCYEISLGDTIGTGTPTKAQAMITAVTRHVPTEKLAAHFHDTYGQALANLLAVLQMGVAVIDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTGIDLEKLAETGSWICDQIAKSSASKVNLALAAK 303

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: WP_033067578.1 (hydroxymethylglutaryl-CoA lyase [Thalassospira australica])

HSP 1 Score: 417.2 bits (1071), Expect = 5.200e-113
Identity = 204/301 (67.77%), Postives = 241/301 (80.07%), Query Frame = 0

Query:   50 LFPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            L  ++P  V+IVEVGPRDGLQNEKA++PT+ KVELI+RL+ AGL  IE TAFVS KWVPQM D  +V+ +I ++PGV YPVLTPN KG E A+A+GA EV+VFGAASE+FSQKNINCSIAESL RFRPVA AA+  GL +RGYVSCVLGCPY+G IAPEKVAEVAKALYDMGCYEISLGDTIG GTP   +AM+ A    +P + +A HFHDTYGQALAN+L  LQ G+A +D+SVAGLGGCPYA GASGNVATEDVVYMLNG+G++TGIDL  L + G +I    G+ + SK    +  K
Sbjct:    3 LISDLPRRVKIVEVGPRDGLQNEKAMVPTNTKVELIHRLNDAGLSVIEATAFVSPKWVPQMADAPDVMAQIDRKPGVTYPVLTPNMKGLEAAIASGATEVAVFGAASESFSQKNINCSIAESLDRFRPVADAAREGGLAVRGYVSCVLGCPYEGDIAPEKVAEVAKALYDMGCYEISLGDTIGTGTPAKAQAMITAVAKHVPIEKIAAHFHDTYGQALANLLAVLQMGVATIDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIETGIDLEKLTKTGSWICDQIGKSSASKVNLALAAK 303

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: AEV25389.1 (isopropylmalate/homocitrate/citramalate synthase [Dechlorosoma suillum PS])

HSP 1 Score: 416.8 bits (1070), Expect = 6.800e-113
Identity = 204/297 (68.69%), Postives = 239/297 (80.47%), Query Frame = 0

Query:   54 VPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            +P+ V+IVEVGPRDGLQNEK ++PT VK+ELI RL+AAGL  +E T+FVS KWVPQMGDN EVL  I ++PGVAYPVLTPN KGF+ AV AGA EV++FGAASEAFSQKNINCSIAESL RF P+ +AA +  +K+RGYVSCV+GCPY+GA+APEK AEVAK LYDMGCYE+SLGDTIG G P S   +L A    +P   LA H+HDTYG A+ANI  +LQ G+AV DASVAGLGGCPYA GASGNVATEDVVY+L G+G+ TGIDL  L +AG FISA  GRE+ SK  R +L K
Sbjct:    3 LPTHVKIVEVGPRDGLQNEKQVVPTAVKIELIERLAAAGLPAVEATSFVSPKWVPQMGDNSEVLRGIRQQPGVAYPVLTPNLKGFDSAVEAGATEVAIFGAASEAFSQKNINCSIAESLKRFEPIVSAASALEIKVRGYVSCVVGCPYEGAVAPEKAAEVAKILYDMGCYEVSLGDTIGVGNPASVSRLLEACARHVPMAKLAGHYHDTYGMAVANIYASLQLGLAVFDASVAGLGGCPYAKGASGNVATEDVVYLLEGLGISTGIDLQRLVEAGAFISAHLGRESASKAARALLAK 299

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: WP_043797773.1 (hydroxymethylglutaryl-CoA lyase [Azospira oryzae])

HSP 1 Score: 416.8 bits (1070), Expect = 6.800e-113
Identity = 204/297 (68.69%), Postives = 239/297 (80.47%), Query Frame = 0

Query:   54 VPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            +P+ V+IVEVGPRDGLQNEK ++PT VK+ELI RL+AAGL  +E T+FVS KWVPQMGDN EVL  I ++PGVAYPVLTPN KGF+ AV AGA EV++FGAASEAFSQKNINCSIAESL RF P+ +AA +  +K+RGYVSCV+GCPY+GA+APEK AEVAK LYDMGCYE+SLGDTIG G P S   +L A    +P   LA H+HDTYG A+ANI  +LQ G+AV DASVAGLGGCPYA GASGNVATEDVVY+L G+G+ TGIDL  L +AG FISA  GRE+ SK  R +L K
Sbjct:    5 LPTHVKIVEVGPRDGLQNEKQVVPTAVKIELIERLAAAGLPAVEATSFVSPKWVPQMGDNSEVLRGIRQQPGVAYPVLTPNLKGFDSAVEAGATEVAIFGAASEAFSQKNINCSIAESLKRFEPIVSAASALEIKVRGYVSCVVGCPYEGAVAPEKAAEVAKILYDMGCYEVSLGDTIGVGNPASVSRLLEACARHVPMAKLAGHYHDTYGMAVANIYASLQLGLAVFDASVAGLGGCPYAKGASGNVATEDVVYLLEGLGISTGIDLQRLVEAGAFISAHLGRESASKAARALLAK 301

[Close]

BLAST of NO04G03170 vs. NCBI_GenBank
Match: GBG03334.1 (3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methyl glutaryl-CoA lyase [Azospira sp. I13])

HSP 1 Score: 415.6 bits (1067), Expect = 1.500e-112
Identity = 204/297 (68.69%), Postives = 236/297 (79.46%), Query Frame = 0

Query:   54 VPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            +P  V+IVEVGPRDGLQNEK ++P  VK+ELI RL+ AGL  +E T+FVS KWVPQMGDN EVL  I K+PGVAYPVLTPN KGF+ AV AGA EV++FGAASEAFSQKNINCSIAESL RF P+ A+A +  +K+RGYVSCV+GCPY+GA+APEK AEVAK LYDMGCYE+SLGDTIG G P S   +L A    +P   LA H+HDTYG A+ANI  +LQ G+AV DASVAGLGGCPYA GASGNVATEDVVY+LNG+G+ TGIDL+ L  AG FISA  GRE  SK  R +L K
Sbjct:    3 LPQHVKIVEVGPRDGLQNEKQVVPAAVKIELIERLATAGLPAVEATSFVSPKWVPQMGDNSEVLRGIRKQPGVAYPVLTPNLKGFDSAVEAGATEVAIFGAASEAFSQKNINCSIAESLKRFEPIVASASALEIKVRGYVSCVVGCPYEGAVAPEKAAEVAKILYDMGCYEVSLGDTIGVGNPASVSRLLEACARHVPMAKLAGHYHDTYGMAVANIYASLQMGLAVFDASVAGLGGCPYAQGASGNVATEDVVYLLNGLGIHTGIDLDQLVAAGAFISAHLGREPASKAARALLAK 299

The following BLAST results are available for this feature:

BLAST of NO04G03170 vs. NCBI_GenBank

BLAST of NO04G03170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28707.1	1.500e-128	81.60	hydroxymethylglutaryl- lyase [Nannochloropsis gadi...	[more]
WP_063088345.1	8.100e-114	68.77	MULTISPECIES: hydroxymethylglutaryl-CoA lyase [Tha...	[more]
WP_008890573.1	3.100e-113	68.77	hydroxymethylglutaryl-CoA lyase [Thalassospira pro...	[more]
KXJ58287.1	4.000e-113	68.77	hydroxymethylglutaryl-CoA lyase [Thalassospira sp....	[more]
WP_062957457.1	4.000e-113	68.77	hydroxymethylglutaryl-CoA lyase [Thalassospira sp....	[more]
WP_064789743.1	4.000e-113	68.44	hydroxymethylglutaryl-CoA lyase [Thalassospira pro...	[more]
WP_033067578.1	5.200e-113	67.77	hydroxymethylglutaryl-CoA lyase [Thalassospira aus...	[more]
AEV25389.1	6.800e-113	68.69	isopropylmalate/homocitrate/citramalate synthase [...	[more]
WP_043797773.1	6.800e-113	68.69	hydroxymethylglutaryl-CoA lyase [Azospira oryzae]	[more]
GBG03334.1	1.500e-112	68.69	3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methyl ...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL076	nonsL076	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR106	ngnoR106	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009455	NSK009455	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G03170.1	NO04G03170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579045	gene_2090	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100002g74	gene1858	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G03170.1	NO04G03170.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G03170 ID=NO04G03170|Name=NO04G03170|organism=Nannochloropsis oceanica|type=gene|length=2202bp
ATGGGGCGCAAGACCTGCCATAACACTGCTATGCTTGGTCCCGCCACCAA
GAGGCTTTTTGAAACGCGCAAACATGTCCTTCACTTGTATTCTTCATTGA
AGGGCCTCCGACGTCGGCAGTCGTCCTCATCCTCAATGGCCCCTTTACTC
TTCCCTAACGTGCCCAGTGCGGTCCGAATCGTCGAGgtaaatcaaagtat
cgtcgctagactgtgtgatgaggcttgtttcacacaaaagtgatgggaac
gatgactgaccctttcgtcgcaatgaccacacgtggtcgcagGTAGGCCC
CCGGGATGGCCTTCAAAATGAGAAGGCTATCATCCCCACAGACGTCAAGG
TGGAGCTGATCAACAGgtgtgtgcagtaccactttgtcttccctatcgca
ctttcttgacttctattcttcttctgccaagtacctgcattctcaattcc
ctaagaatcgaacgaacagctatatagctcacgatctatcaccagcagaa
tgtcgttaccgtcacataacctctctcacactggctccctctttccgatt
gtccgcccgctcatttgcttcattagACTATCCGCAGCGGGCCTGCAAAC
CATTGAGGTCACGGCTTTCGTTTCCAAGAAGTGGGTGCCCCAGATGGGCG
ACAACAAGGAGGTGCTAACACGCATCATCAAGAGGCCTGGGGTGGCTTAT
CCAGTGCTCACGCCTAACGCCAAGgtatgtgtgaccagattttgtttatt
actttcccgaggtacggatggcgctttacttttacccacttttccctctt
gcccatcaccatcatccagGGCTTTGAAGACGCCGTGGCCGCGGGGGCGA
TGGAAGTATCAGTTTTTGGTGCGGCATCTGAGGCCTTCAGTCAAAAAAAC
ATAAATTGCAGgtacgctttgcttttcaaagtgctcctccaattcattca
cctattcgtgcacacaatcgatgcgcacacaagcggagggaggcagaggt
tgggcaacaagggtcgaaggatttgacgtataaagagtttcatcagatgt
actctttcagttttcttagtcttcctcctcctccttttcctcctccttct
cttccttctcctcctcctccgtacttttccttcccgtcacagCATCGCCG
AGAGCCTGCACCGTTTCCGGCCCGTGGCAGCGGCCGCCAAATCACGCGGG
CTAAAGATGCGGGGTTACGTTTCCTGTGTCTTGGGGTGTCCTTATCAGGG
AGCAATAGCGCCAGAAAAGGTGGCAGAAGTAGCTAAAGCACTGTACGACA
TGGGCTGCTACGAGATTTCCTTGGGGGACACCATTGGTGCAGGAACCCCA
Ggtgcgtggataatatcaacaaaggggggttgtcaaggaaagaaagacct
tgcgattgaagacgaggccgcggtcgtgataaacagaaggtaccttgcct
cgtcttggttttttttaagagtaccctcggggacggctttttatggcgca
tgccgaagcaagccgatgctgcaccatgcagagcatcacactccatgggc
aattttgcatatgaaccatcaaggcgtatgcgacttattatatgcccgtc
ctcaaccatgataaattgtgggaaactcgatccgttccgatctgtcttaa
ttgaaggagaagagataatctccaccgctcttgtaccttctcaccatttg
tgtttttgtatatctcgcttttcccttcggcagGGTCCACGCGGGCCATG
CTGCTAGCAACAAAAGCATGTATCCCGGCCAAACACCTGGCAGTGCACTT
CCACGATACCTATGGGCAGGCTCTGGCCAACATTTTGACAGgtaggaaag
attaataggagatcttgcctttttctagtctttccccccacaagatggaa
ttataatcagaacaacttcccatcaacatcactgacattttttgctctcc
actcatgcagCCCTGCAAGAGGGCATTGCAGTGGTGGATGCCTCTGTGGC
CGGGCTGGGTGGTTGTCCCTACGCGATGGGGGCGTCGGGCAACGTGGCAA
CCGAGGACGTGGTTTACATGCTTAATGGCATGGGAGTTGATACGGGTATC
GATTTGAACGCTTTAGCTCAGGCAGGACAGTTCATCAGCGCTGCTTGTGG
GAGGGAAACTCAATCCAAAACAGGGCGGGTGGTTTTGGGGAAACTGACCT
GA

protein sequence of NO04G03170.1

>NO04G03170.1-protein ID=NO04G03170.1-protein|Name=NO04G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MGRKTCHNTAMLGPATKRLFETRKHVLHLYSSLKGLRRRQSSSSSMAPLL
FPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTA
FVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVS
VFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCP
YQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACI
PAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGN
VATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK
LT*

Synonyms

Publications