NO04G03170.1, NO04G03170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03170.1
Unique NameNO04G03170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr4:866604..868805 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:866604..868805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03170.1 vs.
Match: EWM28707.1 (hydroxymethylglutaryl- lyase [Nannochloropsis gaditana])

HSP 1 Score: 492.7 bits (1267), Expect = 9.800e-136
Identity = 249/314 (79.30%), Postives = 275/314 (87.58%), Query Frame = 0 
Query:   37 RRRQSSSSSMAPLLFPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTAFVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVSVFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCPYQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACIPAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGNVATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK 351
            ++R  SS+S A  LFP  P  VRIVEVGPRDGLQNE+AII T+ KVELI+RLS  GLQTIE TAFVSKKWVPQMGD+ EV+ RI K+PGV YPVLTPN KGFEDA++AGA EVSVFGAASEAFS KNINCS+AESL RF+PV AAAK+   K+RGYVSCVLGCPY+G +APEKVA+VA+ALYDMGCYEISLGDTIG GTPGSTRAMLLATKA IPA+HLAVHFHDTYGQALANILTALQEGI VVDASVAGLGGCPYA GASGNVATEDVVYML+GMG+ TGIDL++LA+AG FIS A GR TQSK GR +L K
Sbjct:   33 KKRSKSSTSSASSLFPLAPRTVRIVEVGPRDGLQNEQAIISTETKVELIDRLSDTGLQTIEATAFVSKKWVPQMGDSTEVMARIHKKPGVGYPVLTPNLKGFEDALSAGATEVSVFGAASEAFSLKNINCSVAESLDRFQPVIAAAKAHKFKVRGYVSCVLGCPYEGKVAPEKVAKVARALYDMGCYEISLGDTIGTGTPGSTRAMLLATKAFIPAEHLAVHFHDTYGQALANILTALQEGIGVVDASVAGLGGCPYAAGASGNVATEDVVYMLHGMGICTGIDLSSLARAGHFISEAVGRNTQSKAGREILKK 346
The following BLAST results are available for this feature:
BLAST of NO04G03170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28707.19.800e-13679.30hydroxymethylglutaryl- lyase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03170NO04G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03170.1NO04G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03170.1.cds1NO04G03170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03170.1.cds2NO04G03170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03170.1.cds3NO04G03170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03170.1.cds4NO04G03170.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03170.1.cds5NO04G03170.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03170.1.cds6NO04G03170.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03170.1.cds7NO04G03170.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03170.1 ID=NO04G03170.1|Name=NO04G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGGGGCGCAAGACCTGCCATAACACTGCTATGCTTGGTCCCGCCACCAA
GAGGCTTTTTGAAACGCGCAAACATGTCCTTCACTTGTATTCTTCATTGA
AGGGCCTCCGACGTCGGCAGTCGTCCTCATCCTCAATGGCCCCTTTACTC
TTCCCTAACGTGCCCAGTGCGGTCCGAATCGTCGAGGTAGGCCCCCGGGA
TGGCCTTCAAAATGAGAAGGCTATCATCCCCACAGACGTCAAGGTGGAGC
TGATCAACAGACTATCCGCAGCGGGCCTGCAAACCATTGAGGTCACGGCT
TTCGTTTCCAAGAAGTGGGTGCCCCAGATGGGCGACAACAAGGAGGTGCT
AACACGCATCATCAAGAGGCCTGGGGTGGCTTATCCAGTGCTCACGCCTA
ACGCCAAGGGCTTTGAAGACGCCGTGGCCGCGGGGGCGATGGAAGTATCA
GTTTTTGGTGCGGCATCTGAGGCCTTCAGTCAAAAAAACATAAATTGCAG
CATCGCCGAGAGCCTGCACCGTTTCCGGCCCGTGGCAGCGGCCGCCAAAT
CACGCGGGCTAAAGATGCGGGGTTACGTTTCCTGTGTCTTGGGGTGTCCT
TATCAGGGAGCAATAGCGCCAGAAAAGGTGGCAGAAGTAGCTAAAGCACT
GTACGACATGGGCTGCTACGAGATTTCCTTGGGGGACACCATTGGTGCAG
GAACCCCAGGGTCCACGCGGGCCATGCTGCTAGCAACAAAAGCATGTATC
CCGGCCAAACACCTGGCAGTGCACTTCCACGATACCTATGGGCAGGCTCT
GGCCAACATTTTGACAGCCCTGCAAGAGGGCATTGCAGTGGTGGATGCCT
CTGTGGCCGGGCTGGGTGGTTGTCCCTACGCGATGGGGGCGTCGGGCAAC
GTGGCAACCGAGGACGTGGTTTACATGCTTAATGGCATGGGAGTTGATAC
GGGTATCGATTTGAACGCTTTAGCTCAGGCAGGACAGTTCATCAGCGCTG
CTTGTGGGAGGGAAACTCAATCCAAAACAGGGCGGGTGGTTTTGGGGAAA
CTGACCTGA
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protein sequence of NO04G03170.1

>NO04G03170.1-protein ID=NO04G03170.1-protein|Name=NO04G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MGRKTCHNTAMLGPATKRLFETRKHVLHLYSSLKGLRRRQSSSSSMAPLL
FPNVPSAVRIVEVGPRDGLQNEKAIIPTDVKVELINRLSAAGLQTIEVTA
FVSKKWVPQMGDNKEVLTRIIKRPGVAYPVLTPNAKGFEDAVAAGAMEVS
VFGAASEAFSQKNINCSIAESLHRFRPVAAAAKSRGLKMRGYVSCVLGCP
YQGAIAPEKVAEVAKALYDMGCYEISLGDTIGAGTPGSTRAMLLATKACI
PAKHLAVHFHDTYGQALANILTALQEGIAVVDASVAGLGGCPYAMGASGN
VATEDVVYMLNGMGVDTGIDLNALAQAGQFISAACGRETQSKTGRVVLGK
LT*
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mRNA from alignment at chr4:866604..868805+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03170.1 ID=NO04G03170.1|Name=NO04G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at chr4:866604..868805+ (Nannochloropsis oceanica)
ATGGGGCGCAAGACCTGCCATAACACTGCTATGCTTGGTCCCGCCACCAA
GAGGCTTTTTGAAACGCGCAAACATGTCCTTCACTTGTATTCTTCATTGA
AGGGCCTCCGACGTCGGCAGTCGTCCTCATCCTCAATGGCCCCTTTACTC
TTCCCTAACGTGCCCAGTGCGGTCCGAATCGTCGAGGTAAATCAAAGTAT
CGTCGCTAGACTGTGTGATGAGGCTTGTTTCACACAAAAGTGATGGGAAC
GATGACTGACCCTTTCGTCGCAATGACCACACGTGGTCGCAGGTAGGCCC
CCGGGATGGCCTTCAAAATGAGAAGGCTATCATCCCCACAGACGTCAAGG
TGGAGCTGATCAACAGGTGTGTGCAGTACCACTTTGTCTTCCCTATCGCA
CTTTCTTGACTTCTATTCTTCTTCTGCCAAGTACCTGCATTCTCAATTCC
CTAAGAATCGAACGAACAGCTATATAGCTCACGATCTATCACCAGCAGAA
TGTCGTTACCGTCACATAACCTCTCTCACACTGGCTCCCTCTTTCCGATT
GTCCGCCCGCTCATTTGCTTCATTAGACTATCCGCAGCGGGCCTGCAAAC
CATTGAGGTCACGGCTTTCGTTTCCAAGAAGTGGGTGCCCCAGATGGGCG
ACAACAAGGAGGTGCTAACACGCATCATCAAGAGGCCTGGGGTGGCTTAT
CCAGTGCTCACGCCTAACGCCAAGGTATGTGTGACCAGATTTTGTTTATT
ACTTTCCCGAGGTACGGATGGCGCTTTACTTTTACCCACTTTTCCCTCTT
GCCCATCACCATCATCCAGGGCTTTGAAGACGCCGTGGCCGCGGGGGCGA
TGGAAGTATCAGTTTTTGGTGCGGCATCTGAGGCCTTCAGTCAAAAAAAC
ATAAATTGCAGGTACGCTTTGCTTTTCAAAGTGCTCCTCCAATTCATTCA
CCTATTCGTGCACACAATCGATGCGCACACAAGCGGAGGGAGGCAGAGGT
TGGGCAACAAGGGTCGAAGGATTTGACGTATAAAGAGTTTCATCAGATGT
ACTCTTTCAGTTTTCTTAGTCTTCCTCCTCCTCCTTTTCCTCCTCCTTCT
CTTCCTTCTCCTCCTCCTCCGTACTTTTCCTTCCCGTCACAGCATCGCCG
AGAGCCTGCACCGTTTCCGGCCCGTGGCAGCGGCCGCCAAATCACGCGGG
CTAAAGATGCGGGGTTACGTTTCCTGTGTCTTGGGGTGTCCTTATCAGGG
AGCAATAGCGCCAGAAAAGGTGGCAGAAGTAGCTAAAGCACTGTACGACA
TGGGCTGCTACGAGATTTCCTTGGGGGACACCATTGGTGCAGGAACCCCA
GGTGCGTGGATAATATCAACAAAGGGGGGTTGTCAAGGAAAGAAAGACCT
TGCGATTGAAGACGAGGCCGCGGTCGTGATAAACAGAAGGTACCTTGCCT
CGTCTTGGTTTTTTTTAAGAGTACCCTCGGGGACGGCTTTTTATGGCGCA
TGCCGAAGCAAGCCGATGCTGCACCATGCAGAGCATCACACTCCATGGGC
AATTTTGCATATGAACCATCAAGGCGTATGCGACTTATTATATGCCCGTC
CTCAACCATGATAAATTGTGGGAAACTCGATCCGTTCCGATCTGTCTTAA
TTGAAGGAGAAGAGATAATCTCCACCGCTCTTGTACCTTCTCACCATTTG
TGTTTTTGTATATCTCGCTTTTCCCTTCGGCAGGGTCCACGCGGGCCATG
CTGCTAGCAACAAAAGCATGTATCCCGGCCAAACACCTGGCAGTGCACTT
CCACGATACCTATGGGCAGGCTCTGGCCAACATTTTGACAGGTAGGAAAG
ATTAATAGGAGATCTTGCCTTTTTCTAGTCTTTCCCCCCACAAGATGGAA
TTATAATCAGAACAACTTCCCATCAACATCACTGACATTTTTTGCTCTCC
ACTCATGCAGCCCTGCAAGAGGGCATTGCAGTGGTGGATGCCTCTGTGGC
CGGGCTGGGTGGTTGTCCCTACGCGATGGGGGCGTCGGGCAACGTGGCAA
CCGAGGACGTGGTTTACATGCTTAATGGCATGGGAGTTGATACGGGTATC
GATTTGAACGCTTTAGCTCAGGCAGGACAGTTCATCAGCGCTGCTTGTGG
GAGGGAAACTCAATCCAAAACAGGGCGGGTGGTTTTGGGGAAACTGACCT
GA
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Coding sequence (CDS) from alignment at chr4:866604..868805+

>NO04G03170.1 ID=NO04G03170.1|Name=NO04G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr4:866604..868805+ (Nannochloropsis oceanica)
ATGGGGCGCAAGACCTGCCATAACACTGCTATGCTTGGTCCCGCCACCAA
GAGGCTTTTTGAAACGCGCAAACATGTCCTTCACTTGTATTCTTCATTGA
AGGGCCTCCGACGTCGGCAGTCGTCCTCATCCTCAATGGCCCCTTTACTC
TTCCCTAACGTGCCCAGTGCGGTCCGAATCGTCGAGGTAGGCCCCCGGGA
TGGCCTTCAAAATGAGAAGGCTATCATCCCCACAGACGTCAAGGTGGAGC
TGATCAACAGACTATCCGCAGCGGGCCTGCAAACCATTGAGGTCACGGCT
TTCGTTTCCAAGAAGTGGGTGCCCCAGATGGGCGACAACAAGGAGGTGCT
AACACGCATCATCAAGAGGCCTGGGGTGGCTTATCCAGTGCTCACGCCTA
ACGCCAAGGGCTTTGAAGACGCCGTGGCCGCGGGGGCGATGGAAGTATCA
GTTTTTGGTGCGGCATCTGAGGCCTTCAGTCAAAAAAACATAAATTGCAG
CATCGCCGAGAGCCTGCACCGTTTCCGGCCCGTGGCAGCGGCCGCCAAAT
CACGCGGGCTAAAGATGCGGGGTTACGTTTCCTGTGTCTTGGGGTGTCCT
TATCAGGGAGCAATAGCGCCAGAAAAGGTGGCAGAAGTAGCTAAAGCACT
GTACGACATGGGCTGCTACGAGATTTCCTTGGGGGACACCATTGGTGCAG
GAACCCCAGGGTCCACGCGGGCCATGCTGCTAGCAACAAAAGCATGTATC
CCGGCCAAACACCTGGCAGTGCACTTCCACGATACCTATGGGCAGGCTCT
GGCCAACATTTTGACAGCCCTGCAAGAGGGCATTGCAGTGGTGGATGCCT
CTGTGGCCGGGCTGGGTGGTTGTCCCTACGCGATGGGGGCGTCGGGCAAC
GTGGCAACCGAGGACGTGGTTTACATGCTTAATGGCATGGGAGTTGATAC
GGGTATCGATTTGAACGCTTTAGCTCAGGCAGGACAGTTCATCAGCGCTG
CTTGTGGGAGGGAAACTCAATCCAAAACAGGGCGGGTGGTTTTGGGGAAA
CTGACCTGA
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Synonyms
Publications